mRNA_S-dermatodea_contig1313.1877.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1313.1877.1
Unique NamemRNA_S-dermatodea_contig1313.1877.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A6H5KLS4_9PHAE (Cofac_haem_bdg domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLS4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.280e-29
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1
Query:   16 AVLASEVLKDSRGPPSYDVT-HERIFDTARASFVPAEPEQLLGPG--FSQRVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQ 300
            A LA  ++K  R  PSYDV  +ERIFDTAR SFVPA+P +L+ PG  F+ RV+C GE+HTHPLHHRMQF V+KA   V K + +P AIGLEMFYRQQQ
Sbjct:   78 AALAPALVKP-RSSPSYDVMKYERIFDTARKSFVPADPSRLIFPGVGFADRVVCTGEMHTHPLHHRMQFEVIKAVASVTKAKTEPLAIGLEMFYRQQQ 174          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A7S1EUR9_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUR9_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 1.430e-16
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   76 HERIFDTARASFVPAEPEQLLGPG-FSQRVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQA 303
            +ERIFDT   SF+P   ++LL  G F+ R++ +GE+HTHPLHHR+Q +++K+ H      R P AIG E FYRQ QA
Sbjct:  130 NERIFDTKSGSFLPPRADRLLANGRFNSRLLLVGEIHTHPLHHRIQLDLIKSLHRSTLQNRQPMAIGFEHFYRQHQA 206          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A836CAW1_9STRA (Cofac_haem_bdg domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.920e-16
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   22 LASEVLKDSRGPPSYDVTHERIFDTARASFVPAEPEQLLGPGFSQRVMCLGELHTHPLHHRMQFNVMKA--AHGVAKMRRDPFA---------IGLEMFYRQQQ 300
            L+   + D+  P  Y + +ERIFDT R SF+P  P++L+  G    ++C+GE H+HPLHHRM+FN++KA  AH  A    +P A         +GLE  YR  Q
Sbjct:   73 LSGAAIVDAAEPIEYSLVNERIFDTQRRSFLPPAPQRLIRAGTLSPLVCVGEEHSHPLHHRMEFNIIKAVHAHHQAAESNEPLAAXXXXXXXAVGLETIYRHHQ 176          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A6S9I595_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I595_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-15
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   64 YDVTHERIFDTARASFVPAEPE-QLLGPGFSQRVMCL--GELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQAC 306
            Y++ + R++DTAR S++PA+P  Q   P     V C+  GE HTHPLHHR++  V++A H +A     P A+GLEMFYRQ QA 
Sbjct:   70 YELANARLYDTARRSYLPADPALQRALPDRLAGVRCVVVGEAHTHPLHHRLELQVVEALHALADPETAPLAVGLEMFYRQHQAA 153          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: W7U433_9STRA (Cofac_haem_bdg domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U433_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.850e-10
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   79 ERIFDTARASFVPAEPEQLL-GPGFSQRVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQA 303
            ERIFDT R SF+PAE  +L+      QRV+C+GE+H     H  ++++++A H   +       +GLEMFYRQ QA
Sbjct:  103 ERIFDTRRRSFLPAEVNRLMHNKALDQRVVCIGEVHNDDAQHYAEYSILQAVH--KRRGATGLTVGLEMFYRQHQA 176          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A7S4C6G7_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C6G7_CHRCT)

HSP 1 Score: 63.9 bits (154), Expect = 1.010e-9
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   55 PPSYDVTHER--IFDTARASFVPAEPEQLLGPGFSQ---------RVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQ 300
            PPS   + ER  +FDT   SF+P  P+  +    +          RV+  GE HTHPLHH MQ  ++KA   V  +   P AIGLEMF+RQ Q
Sbjct:   72 PPSSSYSPERMALFDTRTESFMPPAPQLYIANALADSTDKNSAVPRVLFAGETHTHPLHHYMQLELIKA---VNALDDAPLAIGLEMFHRQHQ 161          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A5J4YW85_PORPP (Cofac_haem_bdg domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW85_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 4.420e-8
Identity = 40/93 (43.01%), Postives = 49/93 (52.69%), Query Frame = 1
Query:   79 ERIFDTARASFVPAE------PEQLLG------------PGFSQ-RVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQ 300
            ERIFDT   S++P        P  L G            P  +Q R++ +GE HTHPLHHRMQ +V+K     A  +  P AIGLE FYRQ Q
Sbjct:  165 ERIFDTRIGSYLPIRAAMEHLPRYLRGNTNPELADSAVPPSSAQKRLLVIGEEHTHPLHHRMQLDVIKTLRQNAPTK--PLAIGLEHFYRQHQ 255          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A0M0JVC5_9EUKA (Iron-regulated protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC5_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 9.220e-8
Identity = 34/88 (38.64%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   61 SYDVTHERIFDTARASFVPAEP--------EQLLGPGFSQRVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQ 300
            SY      ++DT   SF+  +P        ++    G   RV+  GE HTHPLHH MQ+ ++KA   V +M   P  IGLEM +RQ Q
Sbjct:    8 SYAKRRSILYDTRAGSFISPDPRAHILSALQRSAVDGVLPRVIFAGEEHTHPLHHAMQYELIKA---VNEMDDQPLMIGLEMCWRQHQ 92          
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Match: A0A7S1XIC8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIC8_9RHOD)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  157 RVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQ 300
            RV+ +GE HTHPLHHR+Q +V++A   VA  R D   +G+E FYRQ Q
Sbjct:   27 RVVVIGETHTHPLHHRIQLDVVRAL--VATQRVD-VVLGMEQFYRQHQ 71          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1313.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KLS4_9PHAE1.280e-2963.27Cofac_haem_bdg domain-containing protein n=2 Tax=E... [more]
A0A7S1EUR9_9RHOD1.430e-1650.65Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A836CAW1_9STRA1.920e-1641.35Cofac_haem_bdg domain-containing protein n=1 Tax=T... [more]
A0A6S9I595_HETAK1.170e-1547.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U433_9STRA2.850e-1043.42Cofac_haem_bdg domain-containing protein n=2 Tax=M... [more]
A0A7S4C6G7_CHRCT1.010e-941.94Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A5J4YW85_PORPP4.420e-843.01Cofac_haem_bdg domain-containing protein n=1 Tax=P... [more]
A0A0M0JVC5_9EUKA9.220e-838.64Iron-regulated protein n=1 Tax=Chrysochromulina to... [more]
A0A7S1XIC8_9RHOD1.830e-554.17Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1313contigS-dermatodea_contig1313:19484..19792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.9389446-CDS-S-dermatodea_contig1313:19483..197921622924274.9389446-CDS-S-dermatodea_contig1313:19483..19792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 19484..19792 +
1694079143.1225102-CDS-S-dermatodea_contig1313:19483..197921694079143.1225102-CDS-S-dermatodea_contig1313:19483..19792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 19484..19792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1313.1877.1prot_S-dermatodea_contig1313.1877.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1313 19484..19792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1313.1877.1

>prot_S-dermatodea_contig1313.1877.1 ID=prot_S-dermatodea_contig1313.1877.1|Name=mRNA_S-dermatodea_contig1313.1877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
VAAAAAVLASEVLKDSRGPPSYDVTHERIFDTARASFVPAEPEQLLGPGF
SQRVMCLGELHTHPLHHRMQFNVMKAAHGVAKMRRDPFAIGLEMFYRQQQ
AC*
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mRNA from alignment at S-dermatodea_contig1313:19484..19792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1313.1877.1 ID=mRNA_S-dermatodea_contig1313.1877.1|Name=mRNA_S-dermatodea_contig1313.1877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at S-dermatodea_contig1313:19484..19792+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCGGCGGCCGCCGCTGTGCTGGCCTCCGAGGTCCTAAAGGATTCACG CGGCCCACCGTCGTACGATGTGACCCACGAGCGCATCTTCGACACCGCCA GAGCGAGCTTCGTGCCCGCGGAGCCAGAGCAGCTGCTCGGCCCCGGCTTC TCTCAGAGGGTGATGTGCCTGGGCGAGCTGCACACGCACCCCCTGCACCA CAGGATGCAATTCAATGTAATGAAGGCCGCGCACGGGGTAGCGAAGATGC GCAGGGACCCCTTCGCCATCGGATTGGAGATGTTCTACCGCCAGCAGCAG GCATGTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1313:19484..19792+

>mRNA_S-dermatodea_contig1313.1877.1 ID=mRNA_S-dermatodea_contig1313.1877.1|Name=mRNA_S-dermatodea_contig1313.1877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig1313:19484..19792+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGCGGCGGCCGCCGCTGTGCTGGCCTCCGAGGTCCTAAAGGATTCACG
CGGCCCACCGTCGTACGATGTGACCCACGAGCGCATCTTCGACACCGCCA
GAGCGAGCTTCGTGCCCGCGGAGCCAGAGCAGCTGCTCGGCCCCGGCTTC
TCTCAGAGGGTGATGTGCCTGGGCGAGCTGCACACGCACCCCCTGCACCA
CAGGATGCAATTCAATGTAATGAAGGCCGCGCACGGGGTAGCGAAGATGC
GCAGGGACCCCTTCGCCATCGGATTGGAGATGTTCTACCGCCAGCAGCAG
GCATGTTGAGTCGCGGCGGCCGCCGCTGTGCTGGCCTCCGAGGTCCTAAA
GGATTCACGCGGCCCACCGTCGTACGATGTGACCCACGAGCGCATCTTCG
ACACCGCCAGAGCGAGCTTCGTGCCCGCGGAGCCAGAGCAGCTGCTCGGC
CCCGGCTTCTCTCAGAGGGTGATGTGCCTGGGCGAGCTGCACACGCACCC
CCTGCACCACAGGATGCAATTCAATGTAATGAAGGCCGCGCACGGGGTAG
CGAAGATGCGCAGGGACCCCTTCGCCATCGGATTGGAGATGTTCTACCGC
CAGCAGCAGGCATGTTGA
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