mRNA_S-dermatodea_contig13125.1870.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13125.1870.1
Unique NamemRNA_S-dermatodea_contig13125.1870.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13125.1870.1 vs. uniprot
Match: D8LCA6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA6_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.330e-18
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  487 RTMANPVKPGSAPLRAVRPPRRDIRKSYLSNLGMKMAVAAGPGETRAPPPMIRRSSF 657
            RT+A+P+K GS PLRAVRPPRRDIR+ YL+NLGMK AV AGPG+ R PPPMIRRSSF
Sbjct:  311 RTVADPLKVGSPPLRAVRPPRRDIRRDYLTNLGMKRAVVAGPGDARTPPPMIRRSSF 367
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13125.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCA6_ECTSI1.330e-1877.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13125contigS-dermatodea_contig13125:5737..6453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D8LCA6
EggNOG OGs2EADK@1,2SGMP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.4162982-CDS-S-dermatodea_contig13125:5736..57971622924274.4162982-CDS-S-dermatodea_contig13125:5736..5797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13125 5737..5797 +
1694079142.7884185-CDS-S-dermatodea_contig13125:5736..57971694079142.7884185-CDS-S-dermatodea_contig13125:5736..5797Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13125 5737..5797 +
1622924274.436034-CDS-S-dermatodea_contig13125:5857..64531622924274.436034-CDS-S-dermatodea_contig13125:5857..6453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13125 5858..6453 +
1694079142.805359-CDS-S-dermatodea_contig13125:5857..64531694079142.805359-CDS-S-dermatodea_contig13125:5857..6453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13125 5858..6453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13125.1870.1prot_S-dermatodea_contig13125.1870.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13125 5737..6453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13125.1870.1

>prot_S-dermatodea_contig13125.1870.1 ID=prot_S-dermatodea_contig13125.1870.1|Name=mRNA_S-dermatodea_contig13125.1870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
EEEEEEGDGSSVATGGGGGAQQEEEEGKRQEEGEGEQEGAAAAAAAAAAR
AATLVVGQDASPDKEACDDPAAAAAAESMTAEEECDGDGDGDGDGDGDGD
GDGDGDGDDGGAVAASSGSRIRDDRLTTSSLSSSPSSRASASPPGSPPRP
PPTPPSSTRVDDRTMANPVKPGSAPLRAVRPPRRDIRKSYLSNLGMKMAV
AAGPGETRAPPPMIRRSSF
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mRNA from alignment at S-dermatodea_contig13125:5737..6453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13125.1870.1 ID=mRNA_S-dermatodea_contig13125.1870.1|Name=mRNA_S-dermatodea_contig13125.1870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=717bp|location=Sequence derived from alignment at S-dermatodea_contig13125:5737..6453+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGAAGAAGAAGAGGAGGGGGACGGTTCTTCTGTGGCCACCGGCGGCGG
CGGCGGTGCGCGTAGCAGCATTGGTTCGGCAGCAGCAGCTGCTGCAGCGG
GGGAGGAGGAGGGGAAGGAAGAGCAGGAAGAGGAGGAGGGAAAACGGCAG
GAGGAGGGCGAGGGAGAGCAGGAGGGGGCGGCAGCAGCAGCAGCAGCAGC
AGCGGCGCGCGCGGCTACTTTGGTTGTTGGCCAGGACGCGTCCCCAGATA
AAGAAGCTTGTGATGACCCCGCCGCCGCCGCCGCCGCGGAGAGCATGACG
GCCGAAGAAGAATGCGACGGTGACGGCGATGGCGATGGTGATGGTGATGG
TGATGGTGATGGCGATGGCGATGGTGATGGTGATGATGGCGGCGCCGTGG
CGGCGTCGAGTGGCTCGAGAATACGGGACGACCGGTTGACAACATCCTCA
TTGTCATCATCGCCGTCTTCGAGGGCTTCCGCCTCTCCGCCGGGGTCTCC
ACCTCGGCCACCGCCAACGCCGCCGTCGTCCACGCGCGTCGACGATCGCA
CCATGGCAAACCCGGTGAAGCCCGGGTCGGCCCCGCTTCGAGCGGTGAGG
CCACCGCGGCGAGACATCCGGAAGTCGTACCTGAGCAACCTGGGGATGAA
GATGGCGGTAGCGGCCGGGCCGGGCGAGACGCGCGCGCCGCCTCCCATGA
TTCGTAGGTCTTCGTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13125:5737..6453+

>mRNA_S-dermatodea_contig13125.1870.1 ID=mRNA_S-dermatodea_contig13125.1870.1|Name=mRNA_S-dermatodea_contig13125.1870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at S-dermatodea_contig13125:5737..6453+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGAAGAAGAAGAGGAGGGGGACGGTTCTTCTGTGGCCACCGGCGGCGG
CGGCGGTGCGCGAAGAAGAAGAAGAGGAGGGGGACGGTTCTTCTGTGGCC
ACCGGCGGCGGCGGCGGTGCGCAGCAGGAAGAGGAGGAGGGAAAACGGCA
GGAGGAGGGCGAGGGAGAGCAGGAGGGGGCGGCAGCAGCAGCAGCAGCAG
CAGCGGCGCGCGCGGCTACTTTGGTTGTTGGCCAGGACGCGTCCCCAGAT
AAAGAAGCTTGTGATGACCCCGCCGCCGCCGCCGCCGCGGAGAGCATGAC
GGCCGAAGAAGAATGCGACGGTGACGGCGATGGCGATGGTGATGGTGATG
GTGATGGTGATGGCGATGGCGATGGTGATGGTGATGATGGCGGCGCCGTG
GCGGCGTCGAGTGGCTCGAGAATACGGGACGACCGGTTGACAACATCCTC
ATTGTCATCATCGCCGTCTTCGAGGGCTTCCGCCTCTCCGCCGGGGTCTC
CACCTCGGCCACCGCCAACGCCGCCGTCGTCCACGCGCGTCGACGATCGC
ACCATGGCAAACCCGGTGAAGCCCGGGTCGGCCCCGCTTCGAGCGGTGAG
GCCACCGCGGCGAGACATCCGGAAGTCGTACCTGAGCAACCTGGGGATGA
AGATGGCGGTAGCGGCCGGGCCGGGCGAGACGCGCGCGCCGCCTCCCATG
ATTCGTAGGTCTTCGTTTAGCAGGAAGAGGAGGAGGGAAAACGGCAGGAG
GAGGGCGAGGGAGAGCAGGAGGGGGCGGCAGCAGCAGCAGCAGCAGCAGC
GGCGCGCGCGGCTACTTTGGTTGTTGGCCAGGACGCGTCCCCAGATAAAG
AAGCTTGTGATGACCCCGCCGCCGCCGCCGCCGCGGAGAGCATGACGGCC
GAAGAAGAATGCGACGGTGACGGCGATGGCGATGGTGATGGTGATGGTGA
TGGTGATGGCGATGGCGATGGTGATGGTGATGATGGCGGCGCCGTGGCGG
CGTCGAGTGGCTCGAGAATACGGGACGACCGGTTGACAACATCCTCATTG
TCATCATCGCCGTCTTCGAGGGCTTCCGCCTCTCCGCCGGGGTCTCCACC
TCGGCCACCGCCAACGCCGCCGTCGTCCACGCGCGTCGACGATCGCACCA
TGGCAAACCCGGTGAAGCCCGGGTCGGCCCCGCTTCGAGCGGTGAGGCCA
CCGCGGCGAGACATCCGGAAGTCGTACCTGAGCAACCTGGGGATGAAGAT
GGCGGTAGCGGCCGGGCCGGGCGAGACGCGCGCGCCGCCTCCCATGATTC
GTAGGTCTTCGTTT
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