mRNA_S-dermatodea_contig13116.1867.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13116.1867.1
Unique NamemRNA_S-dermatodea_contig13116.1867.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13116.1867.1 vs. uniprot
Match: A0A6H5JZH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.680e-35
Identity = 113/220 (51.36%), Postives = 126/220 (57.27%), Query Frame = 1 
Query:    1 SSTGVPPENQILLHGGPPYKPLRSPLPP-SVTAA-PAVAPGDSAAATAKK------------NRIYLFDWRTLAPERSVPSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEAAEMV------EFVGPLEVRLPTEPGAAPSPLPSAEGSVLLATIANYERGSMLALNRGQAYLDSTAQRLRGGEACVERMQT 600
            S TGVP ENQI+L GGPPYKPLRS LPP S+T   P+ AP  SA++                 +I+LFDWRTLAPE+      XXXXXXXXX                XXXXXXX                        AAE +      EFVGP EV LPTEPGA+PSPLP  EGS LL TIA YERGSML LNRGQAYL+S+ +RL G E C ERMQT
Sbjct:   70 SLTGVPAENQIILWGGPPYKPLRSQLPPASITVTVPSTAPTGSASSRVGSXXXXXXXXXXVATKIFLFDWRTLAPEQXXXXXXXXXXXXXXXSQIIGTLDGSLTPSGSXXXXXXXGVDQPLASSSAAPGVTGVDAAGAAAAESLMMEEAAEFVGPAEVTLPTEPGASPSPLPPVEGSYLLKTIAGYERGSMLTLNRGQAYLESSRRRLAGAETCAERMQT 289
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BLAST of mRNA_S-dermatodea_contig13116.1867.1 vs. uniprot
Match: D7FIX1_ECTSI (Autophagy-related protein 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 6.390e-24
Identity = 56/77 (72.73%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:  382 EMVEFVGPLEVRLPTEPGAAPSPLPSAEGSVLLATIANYERGSMLALNRGQAYLDSTAQRLRGGEACVERMQTQASA 612
            E  EFVGP EV LPTEPGA+PSPLP  EGS LL TIA YERGSML LNRGQAYL+S+ +RL GGE C ERMQT   A
Sbjct:    3 EAAEFVGPAEVTLPTEPGASPSPLPPVEGSYLLKTIAGYERGSMLTLNRGQAYLESSRRRLAGGETCAERMQTMVKA 79
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13116.1867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZH5_9PHAE2.680e-3551.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX1_ECTSI6.390e-2472.73Autophagy-related protein 11 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13116contigS-dermatodea_contig13116:3903..5775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size612
Cds size612
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.341149-CDS-S-dermatodea_contig13116:3902..43851622924274.341149-CDS-S-dermatodea_contig13116:3902..4385Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13116 3903..4385 +
1694079142.7536087-CDS-S-dermatodea_contig13116:3902..43851694079142.7536087-CDS-S-dermatodea_contig13116:3902..4385Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13116 3903..4385 +
1622924274.3536649-CDS-S-dermatodea_contig13116:5646..57751622924274.3536649-CDS-S-dermatodea_contig13116:5646..5775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13116 5647..5775 +
1694079142.761494-CDS-S-dermatodea_contig13116:5646..57751694079142.761494-CDS-S-dermatodea_contig13116:5646..5775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13116 5647..5775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13116.1867.1prot_S-dermatodea_contig13116.1867.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13116 3903..5775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13116.1867.1

>prot_S-dermatodea_contig13116.1867.1 ID=prot_S-dermatodea_contig13116.1867.1|Name=mRNA_S-dermatodea_contig13116.1867.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=204bp
SSTGVPPENQILLHGGPPYKPLRSPLPPSVTAAPAVAPGDSAAATAKKNR
IYLFDWRTLAPERSVPSSPTAAAGGAGGAGGLGASATGGGGGRGGDASYS
SAVAAASAASAANAAAPAAPALDVEAAEMVEFVGPLEVRLPTEPGAAPSP
LPSAEGSVLLATIANYERGSMLALNRGQAYLDSTAQRLRGGEACVERMQT
QASA
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mRNA from alignment at S-dermatodea_contig13116:3903..5775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13116.1867.1 ID=mRNA_S-dermatodea_contig13116.1867.1|Name=mRNA_S-dermatodea_contig13116.1867.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1873bp|location=Sequence derived from alignment at S-dermatodea_contig13116:3903..5775+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTCCACCGGAGTGCCGCCGGAGAACCAGATCCTCCTCCACGGCGGGCC
CCCGTACAAGCCGCTACGGTCCCCCCTACCCCCCAGCGTCACCGCCGCCC
CCGCCGTCGCCCCTGGTGATTCGGCGGCGGCAACGGCGAAGAAGAACAGG
ATATACCTCTTCGACTGGCGAACCCTTGCGCCGGAGAGATCCGTCCCTTC
GTCCCCGACTGCGGCCGCTGGCGGCGCTGGCGGCGCCGGTGGCTTGGGCG
CATCCGCTACCGGTGGTGGTGGGGGTAGGGGTGGCGATGCTTCCTATTCG
TCGGCCGTTGCTGCTGCGAGCGCGGCGAGTGCGGCGAACGCGGCGGCGCC
GGCGGCGCCGGCGCTGGATGTGGAGGCGGCAGAAATGGTTGAGTTTGTTG
GGCCGTTGGAGGTGAGGCTGCCAACGGAGCCCGGGGCGGCGCCGTCTCCG
CTGCCCTCGGCGGAAGGGTCCGTCCTCTTGGCGGTGAGTGTGCCTTGCTT
TGCTGTTCGCTGCTCGTGTTGTGGGGCTTGTCGGAATGAGGTGTTTATGG
GGGGTCGAGGGAAGAGGGGCGGGGAGTGGGGTTACTCAGTACTCATGTTT
TGCATGCGTTAGCTGTTAAGACTGTTGACGACGCGTCCCAGAGAGGGCGG
AGGACGGGGGCGGGGTGCTTATGTTAAATGCATGTCGTATCTAGACGGAC
ATAGATCACGAGCCCCAACAATGCCGGGACGGAGGGGCGATATGCCGGGG
TTTTCGCCGGCCAGGCTAGGCTTCGTTTCACAAGGATGATGCCTGCTGCT
AGCCATCATCCCTGGGTTTGCAACGCCAGCCGATATAGTGTGTGGGGGGG
TAAGCCTCCATGGTGTATAGCTTGGACCATACTTCCTTCGAGAATGTGGG
ACCCTGACACTCGCTCTATGTTTTTGACATATTTTTTTCATGTTTTAGGG
CGCGAGGGCGACAAAAGTAATGTATTACGGGGGACTAGACCATAGTTTAA
CAGGTCCAAATTTGCCTCAAGTTTCAACCTAGAAACATCGAAATAGGCTG
GAATTACCGAGATTTCAAGGTCGATGTTCTTGTAAATGGCCGTATCTCGT
GTTTTTTTGTGTGAGATTTTTGCCTGTTGTTTGGAAATTCGTGGTCGAAA
TAGTTGGGTATTCACGGTCATGAGATATGGTCCTGATTACTTTATTACTT
GATAATAGGGTACCTCCGTAATACTACAACTAAGCCTTCTCGTATTATAG
AATTAAATATTTTTGGCTCACAAATGCACGTCAAACATTCCAGGGTTCCT
CACAAACCAGTACCGGGAATTACACAGGCCTTTTCACAGTACATACCAGT
TCCAGTGCCGGTTTTTGGCGCGGCACTTGTGAGAGATTTTTTTCTCGAAA
CCGGCGCTGGTTCGGCCCTGTCAGATTCCTAGACGGCACTGGTACGGCAC
TGTGAGAAAAAAAATCTCGAAAACCGGCACTACTGGTTTGGCACTGTCAG
GCTTGAACCCGGCAACTGAAATGGCACTGTCAGAAGTTGCCGGCACTGTG
AGGACCCCTGAAAGATACAGATTCATTACCAGCGTGTGTCCCTCAGGAAA
AAAGCACAATTTGCTTGTGCCGGTTTCCGCAGCCCTCGTGCCTCTCTGAT
CCGTCCCCGGTGTTGCCTCTGTGTCTCTGCGTGTTGCGCTTTCCCCTACC
TTGCGTGTGTTCCCGTTGTAACGTGCTCTCTCGCGGGGCTGAAGACTATC
GCCAACTACGAACGGGGCTCGATGCTGGCGTTGAATCGCGGGCAGGCTTA
CTTGGACTCCACCGCCCAGAGACTGCGGGGCGGGGAGGCCTGCGTCGAGA
GAATGCAGACCCAGGCAAGTGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13116:3903..5775+

>mRNA_S-dermatodea_contig13116.1867.1 ID=mRNA_S-dermatodea_contig13116.1867.1|Name=mRNA_S-dermatodea_contig13116.1867.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at S-dermatodea_contig13116:3903..5775+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTCCACCGGAGTGCCGCCGGAGAACCAGATCCTCCTCCACGGCGGGCC
CCCGTACAAGCCGCTACGGTCCCCCCTACCCCCCAGCGTCACCGCCGCCC
CCGCCGTCGCCCCTGGTGATTCGGCGGCGGCAACGGCGAAGAAGAACAGG
ATATACCTCTTCGACTGGCGAACCCTTGCGCCGGAGAGATCCGTCCCTTC
GTCCCCGACTGCGGCCGCTGGCGGCGCTGGCGGCGCCGGTGGCTTGGGCG
CATCCGCTACCGGTGGTGGTGGGGGTAGGGGTGGCGATGCTTCCTATTCG
TCGGCCGTTGCTGCTGCGAGCGCGGCGAGTGCGGCGAACGCGGCGGCGCC
GGCGGCGCCGGCGCTGGATGTGGAGGCGGCAGAAATGGTTGAGTTTGTTG
GGCCGTTGGAGGTGAGGCTGCCAACGGAGCCCGGGGCGGCGCCGTCTCCG
CTGCCCTCGGCGGAAGGGTCCGTCCTCTTGGCGAGCTCCACCGGAGTGCC
GCCGGAGAACCAGATCCTCCTCCACGGCGGGCCCCCGTACAAGCCGCTAC
GGTCCCCCCTACCCCCCAGCGTCACCGCCGCCCCCGCCGTCGCCCCTGGT
GATTCGGCGGCGGCAACGGCGAAGAAGAACAGGATATACCTCTTCGACTG
GCGAACCCTTGCGCCGGAGAGATCCGTCCCTTCGTCCCCGACTGCGGCCG
CTGGCGGCGCTGGCGGCGCCGGTGGCTTGGGCGCATCCGCTACCGGTGGT
GGTGGGGGTAGGGGTGGCGATGCTTCCTATTCGTCGGCCGTTGCTGCTGC
GAGCGCGGCGAGTGCGGCGAACGCGGCGGCGCCGGCGGCGCCGGCGCTGG
ATGTGGAGGCGGCAGAAATGGTTGAGTTTGTTGGGCCGTTGGAGGTGAGG
CTGCCAACGGAGCCCGGGGCGGCGCCGTCTCCGCTGCCCTCGGCGGAAGG
GTCCGTCCTCTTGGCGACTATCGCCAACTACGAACGGGGCTCGATGCTGG
CGTTGAATCGCGGGCAGGCTTACTTGGACTCCACCGCCCAGAGACTGCGG
GGCGGGGAGGCCTGCGTCGAGAGAATGCAGACCCAGGCAAGTGCCACTAT
CGCCAACTACGAACGGGGCTCGATGCTGGCGTTGAATCGCGGGCAGGCTT
ACTTGGACTCCACCGCCCAGAGACTGCGGGGCGGGGAGGCCTGCGTCGAG
AGAATGCAGACCCAGGCAAGTGCC
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