mRNA_S-dermatodea_contig13102.1859.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13102.1859.1
Unique NamemRNA_S-dermatodea_contig13102.1859.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13102.1859.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.660e-12
Identity = 58/161 (36.02%), Postives = 66/161 (40.99%), Query Frame = 1 
Query:    1 QFYRKLQFCDGVAELSKTFPRGVIENLPEGAVTDKNFLGGGVSVTGNGDDPGGGARVXXXXXXXXXXXXSGRPSPVRVARVFGGGLQLQGDENWTPPPLPXXPLLSAV--ASPNLNSGGGPRGAIKGRCHRASLERRFSTSSGGG--------PNTPSPRA 453
            +FYRKL+FCDGVAEL+  FP  +IE                                                              +QGDE WTPPPLP XPL SA   ASP L +GG    AIK R  R SL++ FSTSS           PNTPSP A
Sbjct:  135 KFYRKLEFCDGVAELASKFPSEIIE--------------------------------------------------------------VQGDETWTPPPLPPXPLQSAPRPASPLLRNGGTKGAAIKERSRRGSLDKNFSTSSAAASGTTMTTDPNTPSPVA 233
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13102.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL35_ECTSI4.660e-1236.02Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13102contigS-dermatodea_contig13102:229..5664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog2880.D7FL35
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0043087,GO:0044424,GO:0044464,GO:0050790,GO:0051336,GO:0065007,GO:0065009
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13102.1859.1prot_S-dermatodea_contig13102.1859.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13102 229..5664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.782988-CDS-S-dermatodea_contig13102:228..3031622924273.782988-CDS-S-dermatodea_contig13102:228..303Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 229..303 +
1694079142.4116485-CDS-S-dermatodea_contig13102:228..3031694079142.4116485-CDS-S-dermatodea_contig13102:228..303Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 229..303 +
1622924273.793067-CDS-S-dermatodea_contig13102:1307..13301622924273.793067-CDS-S-dermatodea_contig13102:1307..1330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 1308..1330 +
1694079142.4213703-CDS-S-dermatodea_contig13102:1307..13301694079142.4213703-CDS-S-dermatodea_contig13102:1307..1330Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 1308..1330 +
1622924273.8075466-CDS-S-dermatodea_contig13102:1375..15381622924273.8075466-CDS-S-dermatodea_contig13102:1375..1538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 1376..1538 +
1694079142.4293349-CDS-S-dermatodea_contig13102:1375..15381694079142.4293349-CDS-S-dermatodea_contig13102:1375..1538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 1376..1538 +
1622924273.8163147-CDS-S-dermatodea_contig13102:3619..37311622924273.8163147-CDS-S-dermatodea_contig13102:3619..3731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 3620..3731 +
1694079142.4369988-CDS-S-dermatodea_contig13102:3619..37311694079142.4369988-CDS-S-dermatodea_contig13102:3619..3731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 3620..3731 +
1622924273.8238811-CDS-S-dermatodea_contig13102:5584..56641622924273.8238811-CDS-S-dermatodea_contig13102:5584..5664Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 5585..5664 +
1694079142.4468317-CDS-S-dermatodea_contig13102:5584..56641694079142.4468317-CDS-S-dermatodea_contig13102:5584..5664Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13102 5585..5664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13102.1859.1

>prot_S-dermatodea_contig13102.1859.1 ID=prot_S-dermatodea_contig13102.1859.1|Name=mRNA_S-dermatodea_contig13102.1859.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=151bp
QFYRKLQFCDGVAELSKTFPRGVIENLPEGAVTDKNFLGGGVSVTGNGDD
PGGGARVEDGDDGGGGGGGSGRPSPVRVARVFGGGLQLQGDENWTPPPLP
PPPLLSAVASPNLNSGGGPRGAIKGRCHRASLERRFSTSSGGGPNTPSPR
A
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mRNA from alignment at S-dermatodea_contig13102:229..5664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13102.1859.1 ID=mRNA_S-dermatodea_contig13102.1859.1|Name=mRNA_S-dermatodea_contig13102.1859.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5436bp|location=Sequence derived from alignment at S-dermatodea_contig13102:229..5664+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCTACCGGAAACTGCAGTTTTGCGACGGCGTCGCAGAGCTTTCCAA
AACGTTTCCCCGGGGCGTCATCGAGGTATGCTAATTATATCACTTGATTG
GTTTGATTGATTGGTTGGTTGATTGATTGATTTTGATTGATTGATTGATT
GATTGATGGATTTATTGAATAAATGATTGATTGATTGATTGAATGATTGA
TTGATTGATTGACTGGTTTGCACATGTATAGCCGATCGGCTTAATCCGAC
CTATCCGACTTGTGGTCAGAAGCGCAAAGAGCCACCGAGAAAATAACAAA
TCAGAGCTCTACTTCTACGATACACCGTACCGTCCCTGGTTGTTAGGAGG
TGGGGCGTACTGACTATAGTAGTAGGTACTGTAGCAACGGCTACGCCCGT
GAGGTGTGTGATGCGTTGGCAGGACGGTGTGTGGGTTTGGAGGCCACGGT
GGCTGTAGTATCTACGGCAGGCGTTCGCCCACGGAGGAAGCCGAGCTGTG
GGCCTCACGCTGCTGGCTGCTGTGGGCCTCACAATCGTATAGGGGTTTAG
TGTACCAAATCGGCCCAAAAAAATCGGCCTCAAAATCGTATAGGAAACGG
TCACTCTAAATCGCTACTAAAAAATCCCCGAAGCGCTATTCGTTAAGAAA
TATACCAGGTATGTATCATACGTGTTTCTCCGTGTGTTGATTGGTTCAAA
CTGGACATAACATCATCTGTACCGCTACGATTTTTAAGTTATTTGTTTTG
GCCCACATATGATAGACTTGCTTTTCCGAGGTAGGTCCGTCTGTGGTCAC
AAGGGTATTTCCCATCTCTCTTATCCCCGGTTCTCACCTTTGATTTTTAT
CGCGAAAGCACTGGGTTCGGCACTCCCGCAGCTCGCCGATTTCTCGGATT
TTTGCTTACTCGCGCTCTCTCTCGCGAAAGCTTTCCGCGCCGGAGGTACG
TAGATAAAATACACTAATATCGACTCTGCCGGGATTGAGCAGAATTTTGT
GTCTTGCTTACTCTCTACCTCCGTTACACTACCCCTTACTCCCAACCACA
CACACCCCTGACCCTAACCCTACCCCCAGAACCTTCCGGAGGGCGCCGTG
ACGTCATCGCGGGCGGCATCATCTTCCTCAAGACGCCGACGAGCGAGAGA
CAAGAATTTCCTCGGCGGCGGCGTGTCGGTTACGGGGAACGGGGACGATC
CCGGGGGCGGCGCTAGGGTCGAGGATGGGGATGACGGTGGCGGCGGCGGC
GGTGGCAGCGGGAGGCCTTCTCCTGTTCGCGTGGCCAGGGTTTTCGGCGG
AGGCCTGCAGGTGCGAGAGGGCGTGTTTGGGGGAGGGGGGGGAGTTGCGT
ATGCCACCGTAGCATCATATATAACAAGTGAGCCTCCATAGTTTGGCGTG
GACCATCTTCCCTCTTGAAAAGGTGGGGCACCAACGCTCGCTCTATGTTT
ATGAAATATACATATTTTAGGGGTACCGTGTGTTAAACGCATGTCGTATC
CAAACGGACACAGAGACCACGCGACCCAAACTATGCCGGCGCGGAGCGAT
ATGCCGGGTTTTCGGTTCGCCGGCCAGGCTACGTTTCACAAGGATGATAC
CAGCTGCTGGTCATCATCCTTGCGTTTGCGACGCCAAACGATACTGTATG
CCATGGGTTATTTAGATATACCGGACAACCAAATGTTGCACATTCTGTAG
GCGTGACTATACTCGAGTACCGCAAAGGGACTTTGATCACCGTGCGAACG
CAAAAACACCACACGCACACAATATACACGACGGTGTATGTGTGATACGC
TCGGACTATAATCTGCTCATGAGTACTCCTGGCGGAGAACCATTCGTAAG
TCAATGGTTGCTCTAGGGCGTTCCAAAAATCCAATGTCCAGCAGGTGTCC
TACAGGACGTGATGCGTTTCGCCCCTTTGGGGAGAGACAAGACTCATCGA
CCGAGGTCTCCGAGCTCACAGGACAAACTGCATGAACCACCCCATGCCCT
ATAAGTGCCAGCAGTTTTACAGCTCCATGCCACAAGAGCCAACCCTACCT
CGACCAACCCCACCTCGAACCTTAAATTCAGGGGGGTTTAGGTCTCAGTT
TTCACAGAGGGGGGAGGGGGGGGGGGGCATTCCATTCCTAATACGTGTAT
GGAGACACCAACAAAGGGAACCTGATTAAGAATCTAATATCTAGTAACCA
CAACGCGAGATGATGGTAGAACGCCTCGGGTCTGCCATCTGATACCAAGA
TATCTACCTTCTGTCATCGCAACATCTACGTAGTAGGTGGCAACGGCTAC
GCCGGTGAGGTGAAAAATCCCACACACTATTTTCAACACTTGGCGCTCAG
CACAAACATCAAGTTGTTTGGCCTCAAAATCGTGTAGGAGTTGTAGTGTA
CAAAATCGCCCTTAAAAGCGTGTAGAAAATACTGTGTAATATCGGCCTCG
AAATGTATATAAAATAGTGTGGAAATCGGCCTAAAATATCGTATAGGAAT
AGTGTGGATTTTTTTTATCAAGGTGGTATTATTTAGTAAAGATGAGCCCT
TCCTTGCTGTAAGGTGTGTCCTTTCTTGTTCCGAGTGTTGCGTTGGTTGT
TGTCATGGAATTTCCGTATTAATAGTTGTTTTTTGGTGTAAAAATTGATT
CCTCATCTGACCGCGAGAGGGTGATGATTACTAAAAAAAAAAAAAAAAAA
AATTGAATAAGTAAACAAAATCAATCGATAAACTGAACCAAATCAAATCA
AATCAAATCAAACCAACCCAAACCAAACCAATCAAATGAAATCAAATCAA
ATCAAACCACACACGAAACCAAAACCAGACCAATGAAATGAAATGAAATG
AAATGAAATGAAATCAAATCAAATCAAACCAGTCAATAATCGTATCAATC
CATCAAATCTATTACGGAGGTACACTATAATCAAGTAAACAGGACCAAAT
CTCATGACCATCAAATACCCAACTATTCCTATTAAAACTATGAATACCCA
AACAACAACACAAATCTCACGAAGAAAAGAATGCCCGAGGTCTGGCCTTA
CGCAACAACATCGACCTTGAAATATCGATAATTCCAGCCTGTTTTTACTT
TTATAGGTCGAGATTTGCGGCAAACTTGAACCTGTTAACTATGGTCCCCC
GTAGTTTCACTCAAGCCAATCAAAATCAATGTCGAAACCCGACCAAACCA
ATCAATTAAATCCAACTCAAGCCAATCAAAATCAATGACTAAACCCGACC
ATACCAATCAAATAAATCCAACTCAAGCCAATCAAACTCAATGACGAAGC
CCGACCAAACCAATCAAATAAATCCAAACACCTGTACCCAGCCTTGCTTT
CGCCTCATTTCTCCTGACTTTGCCGTCTCATGTTCCACCAGCTACAAGGG
GACGAGAACTGGACACCCCCGCCCCTACCACCGCCTCCACTGCTTTCGGC
CGTCGCTTCCCCAAACCTCAACAGTGGAGGGGGTCCGAGGGGTGCGATAA
AGGGTGAGTACTGTAGCAGCAACCGCGAGAGTAGGAGTCGTTGCGTTTCG
GATGTTTGTTTGTTTTGTGTGATTGATTTCATTGGTTGATTGATTGGTTC
GTTGGTTGATTTGATTGGTTAATTAGCTGATTTGATTGGTTGATTGGCTG
ATTATTTGGTTGGTTGATTGATTGATTTGATTGGTCGATTGATTGGTTCA
TTTATGGCTTGATTGAATTTATTGATTTATTTTGATTAATTTTGATCGGT
TGATTGACTGATTGATTTGGTTGGTTGATTGGTCGATTGATTGATTTGAT
TGGTCCATTGATGGATTGATTGATTGAATTGATTGATTGCACTAAGGCCA
TCTCTTATGGCAGTTAAAACGTTGCACAATGAAAACAAAAATATTATTTG
GCCAAAGATGGGCCCTTTTCAGCGAAAACTCTTTTTTCATTCGGCCCAAT
CTGATCATCCGACGATGAGAAGATTCCAAAGGTTTTCACTGAGATTTTGC
TCGATGTTTTTTTTTCCCAGCTAAATATGGAGCCCCCCCCCCCCCAATTT
CAAGCGCACAAAAGACTTGGGGGATGGCATTTTTTTGCTTACTCACGGTC
TCGCGTGTTATAGCTCTACAATATTTAGTATAGATCTGTAGTAAGTAGCA
CCTTCGCGCGAGGGGACTGACCGCCTGTTGAGATGTTTGTATTGTTCACA
GTGTGCTGCATACAAACCAAGTATCTTTCGCACTTGGGGAGTCAAGTCGC
CTGGACCACGTTCTACTATTACTAAGGATATTTTCTTTCTGGCGGGCGTG
AAATTAAATTATCTCAGTTTTGTGCACAACAAAGTCCACCCGGGCGTTCC
TTCTCCTGTCCCGATGAGTTAATTGTATGAGTTAATTGTATGGATTGGGC
GCTTTCTGTGTTCTGTTTCTTTACAAAAAAAACGTATACATGTATAGAGC
TCTACTGCGTGTAGTATTATTTGTACTGTACATAACATGCATACTGCTTA
TAGTAGGGTCCCACGAACAGAGACACTGGACCCGATGATGGGCCGGCATG
TGCTCTGCTGTGTGGCGGTGCACGCAGCGATCGCTAGCTACTATTACCGG
GGACCATAGTTTACAGGTCCAAATTTGCCTAAAGTCTCAACCTAGAAAAA
TCGTAAGCGGCTGAATTTATTATCGAGATTTCAAGGTCGTGTCCTTGTAT
ATTAGCCATAACTCGTGTCTTTTTGTTTTTTGTTTTTAGGTATTGTATTC
ATGGTCGGAATAGTTGGGTAGCCGTGGTCATGAGTCGTGGTTACTGCCTA
CCTCTGTAATATTTTGTTTCGCTAAGTAAATATTAGTGGCGAATCTTGTA
CTCTGTGTACCTCCGTAATATTAAATAGTACCAGGTACATACTATAGTAC
ATTGTATATACTACACACTACTATATACTACGCTATAAAATATATGCGTT
TTACTACAAGTATATAGTATTGGTACATACTATACTACATACTATATACT
GTATACTACTATACACTCCTTGCAGGGTGTTCGTGCCAGTTTAAAAAAAT
ACATCTGGAATACACCATTGAGCAGATATTTGGTCCTGATTATCTGTGTA
TCTCCGTAATACATACGTTTTACTCTTTACTCCCTCTTCCTCCCCCACCC
TCCCGCGAGACACGGCGCATGCTTGAGAGGTTTCCATGGAAGGGGTGGAA
CTTATCCCCCCACCACACCCCCCCTCTCTCTGATCCTTATCCAGTTTTGT
GCCTACCTTCCAGCAACCAAAGTCCGCGATACCCCCATCCCCGTCCCCGT
CCCCGTCCCCTCCACCCCATATGCAAACCCCTCTTCCTCCCTCCCACGCA
ACACAGGCCGTTGCCACCGAGCATCGCTTGAGCGGCGCTTCTCCACGAGC
TCCGGCGGCGGTCCGAACACCCCTTCCCCCAGAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13102:229..5664+

>mRNA_S-dermatodea_contig13102.1859.1 ID=mRNA_S-dermatodea_contig13102.1859.1|Name=mRNA_S-dermatodea_contig13102.1859.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at S-dermatodea_contig13102:229..5664+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCTACCGGAAACTGCAGTTTTGCGACGGCGTCGCAGAGCTTTCCAA
AACGTTTCCCCGGGGCGTCATCGAGCAGTTCTACCGGAAACTGCAGTTTT
GCGACGGCGTCGCAGAGCTTTCCAAAACGTTTCCCCGGGGCGTCATCGAG
AACCTTCCGGAGGGCGCCGTGACAACCTTCCGGAGGGCGCCGTGACAGAC
AAGAATTTCCTCGGCGGCGGCGTGTCGGTTACGGGGAACGGGGACGATCC
CGGGGGCGGCGCTAGGGTCGAGGATGGGGATGACGGTGGCGGCGGCGGCG
GTGGCAGCGGGAGGCCTTCTCCTGTTCGCGTGGCCAGGGTTTTCGGCGGA
GGCCTGCAGAGACAAGAATTTCCTCGGCGGCGGCGTGTCGGTTACGGGGA
ACGGGGACGATCCCGGGGGCGGCGCTAGGGTCGAGGATGGGGATGACGGT
GGCGGCGGCGGCGGTGGCAGCGGGAGGCCTTCTCCTGTTCGCGTGGCCAG
GGTTTTCGGCGGAGGCCTGCAGCTACAAGGGGACGAGAACTGGACACCCC
CGCCCCTACCACCGCCTCCACTGCTTTCGGCCGTCGCTTCCCCAAACCTC
AACAGTGGAGGGGGTCCGAGGGGTGCGATAAAGGCTACAAGGGGACGAGA
ACTGGACACCCCCGCCCCTACCACCGCCTCCACTGCTTTCGGCCGTCGCT
TCCCCAAACCTCAACAGTGGAGGGGGTCCGAGGGGTGCGATAAAGGGCCG
TTGCCACCGAGCATCGCTTGAGCGGCGCTTCTCCACGAGCTCCGGCGGCG
GTCCGAACACCCCTTCCCCCAGAGCGGCCGTTGCCACCGAGCATCGCTTG
AGCGGCGCTTCTCCACGAGCTCCGGCGGCGGTCCGAACACCCCTTCCCCC
AGAGCG
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