mRNA_S-dermatodea_contig13094.1855.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13094.1855.1
Unique NamemRNA_S-dermatodea_contig13094.1855.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13094.1855.1 vs. uniprot
Match: A0A6H5KD18_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD18_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.430e-24
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    7 GSGDSVGDDMDEAFRKLEKMQFWGKVEDVGFQAMEGEVEEKKRTQISVGVAKACSVGTQMTLIMGGGALLCRLLPILLGHKVEDDDEEIEANSPYLLE 300
            GS     DDM E F K ++ QFW  VE  G + +E EV EKK  +I   VA+ACSVG QMTLIMGGGALL RLLP+LLGH + DDDE  +AN+PYLL+
Sbjct:   88 GSDGPDDDDMAEVFAKFQEEQFWEDVEYAGMEVLEEEVAEKKTKEIFAQVARACSVGAQMTLIMGGGALLFRLLPVLLGHDL-DDDEGDDANTPYLLQ 184
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13094.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD18_9PHAE1.430e-2459.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13094contigS-dermatodea_contig13094:2625..6499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size377
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13094.1855.1prot_S-dermatodea_contig13094.1855.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13094 2625..6498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.2614837-CDS-S-dermatodea_contig13094:2624..26931622924273.2614837-CDS-S-dermatodea_contig13094:2624..2693Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13094 2625..2693 +
1694079141.8930159-CDS-S-dermatodea_contig13094:2624..26931694079141.8930159-CDS-S-dermatodea_contig13094:2624..2693Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13094 2625..2693 +
1622924273.2696426-CDS-S-dermatodea_contig13094:5115..52671622924273.2696426-CDS-S-dermatodea_contig13094:5115..5267Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13094 5116..5267 +
1694079141.9036334-CDS-S-dermatodea_contig13094:5115..52671694079141.9036334-CDS-S-dermatodea_contig13094:5115..5267Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13094 5116..5267 +
1622924273.2797642-CDS-S-dermatodea_contig13094:6344..64981622924273.2797642-CDS-S-dermatodea_contig13094:6344..6498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13094 6345..6498 +
1694079141.9239957-CDS-S-dermatodea_contig13094:6344..64981694079141.9239957-CDS-S-dermatodea_contig13094:6344..6498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13094 6345..6498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13094.1855.1

>prot_S-dermatodea_contig13094.1855.1 ID=prot_S-dermatodea_contig13094.1855.1|Name=mRNA_S-dermatodea_contig13094.1855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
ASGSGDSVGDDMDEAFRKLEKMQFWGKVEDVGFQAMEGEVEEKKRTQISV
GVAKACSVGTQMTLIMGGGALLCRLLPILLGHKVEDDDEEIEANSPYLLE
SGVEGRSEALPAPPHRLPITSAGEG
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mRNA from alignment at S-dermatodea_contig13094:2625..6499+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13094.1855.1 ID=mRNA_S-dermatodea_contig13094.1855.1|Name=mRNA_S-dermatodea_contig13094.1855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3875bp|location=Sequence derived from alignment at S-dermatodea_contig13094:2625..6499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCTGGATCGGGTGATTCTGTTGGCGATGACATGGACGAGGCGTTCCG
CAAGCTGGAGAAGATGCAGGTGAGGTTGGTTGGGTTTGAGTTTGATGGAC
ATCACATCATGACATGTGTTTGGGTGTGCGGTGTGCGGTGTGTTGTGTGT
TGTATGCGTACGGAGATGTTGGAGATTGGAGATGGGTGTTCGGTACTCTG
TGTCTGTATGACGGTGCCGAGGCGGCAGCCGCTTGCTCTGGCGCATCCTG
TCGCTCACTCGTGTGGCAGGTTCGAGCCGAGACTGGCGTGCTGCTACTCG
TCACTCGTGACTTGGGAGGATTAGGATTCCTTCTTGAAAAGGACCCATGA
TGTTGGCGTCCTGCGAACGGAGGACGGAGGGGGCATTGTTGGAGTGGTCT
CTGAAATCGAACACGTGCACACCTCTCCAAGACTCAACACCTCACACACC
TCACACCTAGCACACACACACACACACACACCGACACCGACAGGAATGAA
CGGGCCGTTGCCCTACTAGAAGCGCAGATTGTCGCCTGTGAGAAAGCCTG
TATGATAAACATGTGCGTAAAGCTGCATAAGAGGGCGGTAGATGCAGCCA
ACTGGAGAGCTCGTAGGGTTCTAAAGAAGCAGAAGAAGGAAGCCGAGGAG
AAACGCCTTACGAGAGTAGAAGCAGTGAGGGCGTCGAGAGCCAGGCAGAA
GGCAAGAAATGCCGAGTAACGCCGCAACCCACGTCGAAGACAAATGAGCG
AACTCCCTCACCGGGAGTAAGCCCATGTAACGGTTAGCGGCGCATCACGC
CTCTGTACCGCCATCACGCCGAGTTGGACGGTTCTATCCAAATTAATTCA
AAGCTCTCGAGTACATTTTTCCTTGCTCTCTTTCAATTTTATCGCCAAAT
TATGTTGCACCCTACGCTTTCAATCAAGTCACGCCGTCGCCCGTTGCGTG
TGTGTCGGAGATCTCGATATTGACAATAAGATAAGCAGCGCCTGCCTGCA
GGCTTCACTTGTAAAAAGTGGAACATAGCAGTTGTAGTAAGGCCTTTTTG
GCTGAGCAGGCGTCTTTGATTGGGCGCCCAACGCAACCCGATTGTAGCCG
CCTTCAGCTCTACTGCGCAGTTATGGAGACTTAATGTCAGTCCCACCGGC
TGCGTGCCTTTCTTGCCTCGAAGTACAAGAATACTACACTACAGTATTAA
TACTACACTACTGTAGTTAGGCAGCAACGGCTACGCCCGTGAGATGTGCG
TTGGCAGGGCGATGTATCGATGGCGGTAGTACCCACGGCATGCGTTAACC
CACGGTAGGCGTTCACCCACGGGGGAAGCCGAGCGTGCAAGAAGGGGCTT
GCTTCTGCTGCTGCTGCTGTGTGTATTCAGTGGTGCGTTTTGTGGGCTGT
CTCCATAATATGCTGTCTCGTGTGTTTGCGTTGGTGGCTGCTGCCTGTGG
CGGCGCGGCGGCGTGGGTAACGTGGGAGCTAGATCGAGCGAGCGAGCGGT
CGATCCATGCGAGCAGAGGGAGAGGCAAAGGAGTAGGTGATGAGACAAGT
AGGAAATAAACCCACGAAAAAACAAAGCAATAAAAGGTTTCAAGTTATAC
ACCAACATATCATAACCTATCGATATGGGTGCTGCTCCCGACAGACAGAG
TGGAGAGGTTACTCGGTGAGAGAGGTTGCTTAGCACATGAGAAGGAGAGG
CAGCGCGTAGCTGGCTGCAGGCCGGCGCGGGCGGCGGGCGGCTGTGTGCA
TGGCTGCGTGATGTTCTGTCTGGCAGCTCGCTGCTTCTTGTGTGGCTGCT
GTGGTGCGTTGTTGTGCTGTCTCGAGAAGATGCTAAGTATGTTGTTTGCG
TTGGTGGCTGCTGCCTCTGGCGGGGCAGCGGCGGGGGCGACGTCGGGGCT
CGAGCGAACGCGCGAGCGAGCGAACGCGAGGCCGACCGCGGTCAGCAAGG
CGGGGATCGCGAGGCGGGGGCCGAGCGCAAAAATCAAGTGTGATGGCTAC
CTACTGCTGTACACCTTGGGCGCTTAACACAAATATCGCTCGACCCAAAC
ATCAAGTTGTTTGGCATCACTTTTTTTGTTTTTTTTCATAGAGAAAAATA
CAAAAAAAAACGACAGCATCCTTCTCTAAAATCGATATACACAATTGGTC
AGTGTTGTATTAGTTAATTAATATATTTACTGCTGCATGTATTGAACCTG
TGGCAATCGACAGCTCGTTTAGATGTCGGCGTGCTGCGGGAGTGCCGTGC
CGACGAACCCACGGCGCGTCGAAAACCAAACACATGGTACAACATTATCC
GACGTGTGATACCGGGGGGATATATGGCGGAAATTGTACCTTGTGGCCAC
AGCCGCGATCCGAGCTAAGGCCCCTGGTGGTCGGAATCAAGATCAGCTAA
AAAGCACATGGGAAGAAATGATGAAAACCTTGTGCGTTAACGTTGTGTCA
ATGCGAAAATGCGAAACGTCGATATGCTCTCGCTTGCCCAGTTTTGGGGG
AAGGTGGAAGACGTCGGTTTCCAAGCGATGGAAGGCGAAGTCGAGGAGAA
GAAGCGGACACAGATCTCCGTCGGCGTGGCCAAAGCTTGCTCGGTCGGGA
CGCAGATGACTCTCATCATGGGTGGGGGCGCCCTGCTGTGCAGGTGAGAC
GGGATGCTTGCACGGCGGCGAGGCATGCCCATGTTGTGAAGGCTAACGTG
GATGCCGCCCAGCATGGCGCTTTAAAATATGTACGTGTAGAGTCCGAGTT
CTCTTCTAGCTTTTTCTCTTTATCTGGGGTGCTATTTCTTATTTCTTGTA
CCATAGTAAGTAGTAAGTACCAGGGACGGTACGATGTATAGTAGAAGTAG
AGTTATGATTAGTTATTTTTCTCCTTGACTCTTTGCGCGTCTGACCACAA
ATCGGGTCGGATTATGCCGATCGGCTATACGTGTGCAAATCAAATCAATC
AAATCAATCAATCAATCAGTTTTGCAAGTTTAGTCGGGGAAACCGGTTGA
CTGAACGGCCGGCCACAAGTGGGGTAATGGTTCACGGCTCTCCCATATTT
TGATGCAGCCACAAGACGCGACAGCAGATTTCTCGGCGTTTTACGGCCGC
ACCAACCGCGCTTGTCGTAGGTTGCTGTTTAGCTTAGGACTACAGCTATT
AATAGTATGGACTGCTGTAGAACGTTGTCGTTCATGCTGTCCGCCTGCCT
TACGTTGTGTTTTGAATTTCGAGTTTGTGGGGGGTGCTTGTGGTATTTGT
TGCTAACAACTGTGTTTCACCGTCCGATTTTGGGAGGACCGAGTTCCTTT
CGCCCGATCGAAACGGGAAAAAGCACGTAGCAGGTACATTACACCTTTCC
CGCTCTACCCCCCCCCCGCGCCCCCTCCCCGCCCACCCCGACATTTAATT
TTACCACCCCCTTCATAGTTTGACATGCCGAACAACGCGCTCAGAATGCT
TTACATTCTAGGTTTCGCACATTTACCCTTTCCCCAAGATATATACTACC
GCATATACTACCGTATCGGTCAAGCGTACAATTGTGCTCCCCGGAAATCT
CCAAGTCGAAAGTACTACGGGACGGGGAGGCGCATGGCACGTCTACGCAG
ATTTAACCTATTTTGAAGCAGGTTCCGTACATACCAGTACCACACTGCGG
CGCTGGAATTAAACAAAAGTTTACGCATACATGATGATACCACAACCCCC
TCGTTTGCGCGTCAGCTCAGGCTACTCCCGATCCTGCTGGGGCACAAAGT
AGAAGACGACGACGAGGAAATCGAGGCCAACTCGCCGTATCTTCTCGAGT
CGGGCGTCGAGGGTCGTTCCGAGGCGCTGCCTGCCCCGCCCCACAGACTG
CCCATTACGAGCGCGGGCGAGGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13094:2625..6499+

>mRNA_S-dermatodea_contig13094.1855.1 ID=mRNA_S-dermatodea_contig13094.1855.1|Name=mRNA_S-dermatodea_contig13094.1855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig13094:2625..6499+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCTGGATCGGGTGATTCTGTTGGCGATGACATGGACGAGGCGTTCCG
CAAGCTGGAGAAGATGCAGGCTTCTGGATCGGGTGATTCTGTTGGCGATG
ACATGGACGAGGCGTTCCGCAAGCTGGAGAAGATGCAGTTTTGGGGGAAG
GTGGAAGACGTCGGTTTCCAAGCGATGGAAGGCGAAGTCGAGGAGAAGAA
GCGGACACAGATCTCCGTCGGCGTGGCCAAAGCTTGCTCGGTCGGGACGC
AGATGACTCTCATCATGGGTGGGGGCGCCCTGCTGTGCAGTTTTGGGGGA
AGGTGGAAGACGTCGGTTTCCAAGCGATGGAAGGCGAAGTCGAGGAGAAG
AAGCGGACACAGATCTCCGTCGGCGTGGCCAAAGCTTGCTCGGTCGGGAC
GCAGATGACTCTCATCATGGGTGGGGGCGCCCTGCTGTGCAGGCTACTCC
CGATCCTGCTGGGGCACAAAGTAGAAGACGACGACGAGGAAATCGAGGCC
AACTCGCCGTATCTTCTCGAGTCGGGCGTCGAGGGTCGTTCCGAGGCGCT
GCCTGCCCCGCCCCACAGACTGCCCATTACGAGCGCGGGCGAGGGAGCTA
CTCCCGATCCTGCTGGGGCACAAAGTAGAAGACGACGACGAGGAAATCGA
GGCCAACTCGCCGTATCTTCTCGAGTCGGGCGTCGAGGGTCGTTCCGAGG
CGCTGCCTGCCCCGCCCCACAGACTGCCCATTACGAGCGCGGGCGAGGGA
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