mRNA_S-dermatodea_contig13011.1826.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13011.1826.1
Unique NamemRNA_S-dermatodea_contig13011.1826.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13011.1826.1 vs. uniprot
Match: D8LCW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW4_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 6.800e-33
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:   49 LEKESLQLMKQQLAAVHQLRLDIQRKESVIQARFRLRMAREGSLQLKVQEGQSAKDRAERLETHCHLLEERCLFLESTNGEYAERLGALDQESRARVDGLLR 354
            +EKESL +M+QQLAAVHQLR+D+QRK+SVIQ           SLQLKVQEG+SA+DR  RLE HCHLLE+RC  LESTNGEYAERLGALDQESR+RVD L R
Sbjct:    1 MEKESLDVMRQQLAAVHQLRIDLQRKDSVIQ-----------SLQLKVQEGESARDREGRLEAHCHLLEKRCSCLESTNGEYAERLGALDQESRSRVDSLRR 91
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13011.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCW4_ECTSI6.800e-3371.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13011contigS-dermatodea_contig13011:1956..6844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007150.1
Exons3
Model size357
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13011.1826.1prot_S-dermatodea_contig13011.1826.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13011 1956..6844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.214987-CDS-S-dermatodea_contig13011:1955..20391622924271.214987-CDS-S-dermatodea_contig13011:1955..2039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13011 1956..2039 -
1694079140.4378169-CDS-S-dermatodea_contig13011:1955..20391694079140.4378169-CDS-S-dermatodea_contig13011:1955..2039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13011 1956..2039 -
1622924271.225269-CDS-S-dermatodea_contig13011:3554..36531622924271.225269-CDS-S-dermatodea_contig13011:3554..3653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13011 3555..3653 -
1694079140.445374-CDS-S-dermatodea_contig13011:3554..36531694079140.445374-CDS-S-dermatodea_contig13011:3554..3653Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13011 3555..3653 -
1622924271.2339513-CDS-S-dermatodea_contig13011:6670..68441622924271.2339513-CDS-S-dermatodea_contig13011:6670..6844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13011 6671..6844 -
1694079140.4529693-CDS-S-dermatodea_contig13011:6670..68441694079140.4529693-CDS-S-dermatodea_contig13011:6670..6844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13011 6671..6844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13011.1826.1

>prot_S-dermatodea_contig13011.1826.1 ID=prot_S-dermatodea_contig13011.1826.1|Name=mRNA_S-dermatodea_contig13011.1826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
MRVIKGRAARELEDLRLEKESLQLMKQQLAAVHQLRLDIQRKESVIQARF
RLRMAREGSLQLKVQEGQSAKDRAERLETHCHLLEERCLFLESTNGEYAE
RLGALDQESRARVDGLLR*
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mRNA from alignment at S-dermatodea_contig13011:1956..6844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13011.1826.1 ID=mRNA_S-dermatodea_contig13011.1826.1|Name=mRNA_S-dermatodea_contig13011.1826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4889bp|location=Sequence derived from alignment at S-dermatodea_contig13011:1956..6844- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGTGATAAAGGGGCGCGCCGCCAGAGAGCTGGAGGACTTGAGGCT
GGAGAAGGAGAGCCTGCAGCTCATGAAACAGCAGCTCGCCGCGGTGCACC
AGCTCCGTTTAGACATCCAGCGGAAGGAGTCTGTCATCCAGGCGAGATTT
CGACTTCGAATGGCCAGGGAGGGGGTTGGCAGGGGCAGGGGTGGCGAGAG
AAAAATCCACTAGCATATTATATTAGAGTGACCACCGATTGCTTTGGTTC
ACGGGGCCCCGTTGACTTGGACCGTGTACGGTATCGAATATTGGTGGCGG
ATGACGTCTTCTCAGAGTTCCGCCGAGTGTTTTCAAAGCCAGGGGGAGAG
GTCGGACATCTTTCTTTTGTCAAGAACGCTTGCGATTCGAAGGACGTGTG
TAGGGGGTTTGCTCTCCGGAAGCCGCGGTATTTTGCAGTTTTGGAGTGGT
CCCCAGAAGCGTCGTTCAACCAATTTCAATCCCTTCTCCCCGCGGATACG
ATATGTAAAATACTGTTGCAATCGCAGCAGAGGGCGGAACGAATGGAACT
GCCCCCACTTAGACGCCTCTCGTGTGCTCACAGCTGTCGAGAGAGTAGTA
GGCAGCAAAAATTGTCAAAAAGCTTTGTTGACCAGCGTTTCTGCCGACCA
CAAAAAAACAACGCAAAAAATGCCACTTCCGGCGGGCAAAACCCCTACAT
GTAATATATGCCGGCTTCGTACCGCAAAAGTCCCTGAGGAACAAAGGTGC
TTGACGTGTTTCCCTTGCTTTGAAAAACTCGGCGGAACTTTGCAATCACT
TCGTCCTCCAGCAATTTTCGATGCCGCACATTTTTCGAAGTCTACGGGGC
CCCGTTAAAGGTTGGTTTGTTGGTTGGTTGATTAATTAATTGATCGAGTG
ATTTGTGGGCCCCTGATGGGGAGGAGTGGTGACGAGGTCTCGAGAGAGGT
AGATCCCGGAGAGCAACACGTAGTGGGAGGTTCCAGGACAGACTGGTCCA
GGGGGGCGCCCACCCGGGGTGTGACTTTACGCGGCACAGCATGTAAATCA
AGGTCAGGTCTGACGTGGCCCAACGGGACGTACGTGACAATCGGGGAACC
GGGAACGTTACCCAACACCGGGTACCCACAGATTGAGTGATTGATTCATT
GATTGATTGTGATTGATTGATTGATTTGATTGGGTGATTGAATGATTGGT
TGACTGATTGATCGATTGATTGATTGGTAGCTTGCTTGTTTGCTCTGCTT
GTTTGTTTGCTTGCTTGCTTGCTTGATTGCTTGCTTGCTTGCTTGCTTGC
TTGCTTGCTGGCTTGCTTGCTTGCTTGCTTGCTATTTATTTAGTTATTGA
TGCACTGATTCGTTGATTCATTGGTTCAGTGATTTGATCACGTATAGCTG
ATCGTCTTAATCCGACCCGACTCGTGGCCATACACAGCAAACACTCAAGG
GAGTCACAACTAAATCATAAATCTACTTGTGCGTACACATCAAATTATAA
TAATAATAATAATAGGCTCAGATTCAATGGGTAGGGATCAAATTTGGTAG
TTCCACGATAATAAAGTTTTAACGCGAAGCGTGAAAAAGCGGGGAGGCGG
AAAGTACGAAGAAAGAGCTCCTACCCGCCGTCCGCAGATCTAGCCCGATA
GACGACGAGCAAGCCTGAAATTTTGTGCGCGAGCGAGCAAGGATTGTTCC
TCGGGCATGCTATGTGATTCACCGTTGCTTGTGTTGGCGCTCGGCCACAT
CGAAGAGTGATCGCTGAGGATCCCACCTTCGCTGTGTTTGTAGGCATGAG
GCGATTCCTCTGGCTGACAGGGCTCTCTTTGCGCTCGGTCACCTCACGCC
ACACCGCTGATGCTGAGGTGCAGAAGAGTGCACCAGAAGCCCCTGCTCAT
GGAGCTCTTTTGATGCTAGGTGTATTCTGTGCGCGGTTTTAGCATACCGT
CCACGTCTCTCGGCCGGCCACCGCTGTAGATTTGGCGCGAAAAATTATTA
TCAAACAGCAAGCAATGTGAGAGTAAGCGGGTCGTCTTGGCCTAAATCCT
CTTCGCTGGCTCCGCGTTGCTACGATCTGCTGCTGCGGTTGCTGCAGGGG
TTCTGCGCACAAAACCACGTGTGCGATCGATGCTGCTGCTGCTGTTAGAC
TCCGCGAGACGCTTGGTTTGGAATTATTTCGTGCACTACAGGTTGCAAAG
TACCTGCTGGAGTGTCGCTACCTGTGTTGGAAATACACGACATCTAGTCG
TACCTTTCTAGTTCCATGGACGGTTCTCGGTGTCATGCCCATGCGGATAG
ATTAGTTACGGTTCGTCTTGGACAAGTTTGCACTTCACAATGCACTATGG
ACTGTAGCAGAAACACGGTCGGTAGTACTTATAACAGCAGTTCTAGGGAC
TTGTGCAGAAGTATCCAGGAGTACAGTAGTTGTACGGACCTTTGATTGAA
CAGTCAGAGAGTACAATAGTCCGATAAGGTATACGTTGTCCCGGGGTATC
GGATGCGGTCCACCCCCATCGATTCATTCTCCTTTGCTTCTCCTTTCCTC
TTCAATTATCTCCATATTTCTTTGTCTTTGGCCACATAAACGCCACTTCA
ATACCATTTGCCTTTTCTCAACAAGAGTGAGCTTAACAGCCACTGTGCCA
CTTCTGCGCATCTACACGAGACATCATCGTCACAGACACTACATTCCAAC
AACCTGTACGTGCGGTGTGCCTCTCAAGGCTTGGAGGCTACTTGGAGCTT
CTCGCCTACTATCGGTAGCTCAAGTGGGCGATTTACACATCGCCGTGTAC
CCGCGAGCAAGCAGACAGCAAAGCCCTTGTTGTGCCCTGCATGGGGCACT
TTGTTCCGGTGGATTTGGCGCACTACTGCAGCGCTTACACGACACCGCGA
ACTGGCTGATGATCAGCCCGACTCCACCTACAACATACTGCATGTCTCAA
AATGCCAAAAAGTATCATTTTAGTCATAGTCACGCTCTTTCGCCACCATC
GCCGTCCTTCGGCATGGTGATTGGCTTGCGCGATGCAATGCGCTATGCAA
TTTATCCCGCTCGGTGGAAATAACGACCAATCAGCGTGTTTTGCCTCTTT
TCAAATTTTGCTGTACCCAAAAAACTACAGCCCATTAATACGAATTATAC
GGTGGCGTTTCCCGGTTTGCCTTTTAACGAATGACGAATAGTCCTTGCAG
CTGAAGGTCCAGGAGGGCCAGTCCGCGAAGGATAGGGCCGAGCGGCTGGA
GACGCATTGCCACCTGCTGGAGGAGAGGTGTTTGTTCCTGGTGAGCTACT
GCCCCGCCCGCGGCTGGTTTGTTGGTTGGTTTATTTATTGGGCGGTTGAT
TGGTTTTGATTGGTTACGTGAATGAAGGGTTGATTGTTGATTGGGCGGAT
AATTGGCTTTGATTGGTTCGTTTTTTATGGCTTGGCGCGAATGATGGGTT
GATGTTGATAGGGCGGTTGGTTGGTTTTGATTGGTTACGTGAGTGGAGGG
TTGATGGTTGATTAAGCGGTTGGTTGGTTTTGATTGGTTGTGTACATGAA
GTGTTGATTGTTGATTGGGCGGATGGTGGGTTTTGATTGGTTCGTTTTTA
TGGCTTGGATAAAGGGTCCGGTTGTTGATTGGGCGGTTGATTTGTATTTG
ATTCGTTTTTTTTTATGGCTTAGTTGCGCGCATGATGGGTTGATGGTTGA
TTGTTGCTTGGGCGGTTGATTGGTTTTTGATTGGTTACGTGAGTGGAGGG
TTGATTGTTGATTGGGCGGTTGATTGGTTTTTATTGGTTGCGTAAATGAA
GTGTTGATTGTCGATTGGGCGGTTAGATGGTTTTGATTGGTTTGGTTATA
TGGCTTGGATGAAGGGTCCAATTGTTGCTTGGGCGGTTGATTTGTATTTG
GTTCGTTTGTTTTTATGGCTTGGTTGCGCGACTAATGGGTTGATGGTGGA
TTGGGCTGTTGATTGGTTTTGGACTGGTTTGTTTTTATGGCTTTGTTGTT
GAAAGGCCTGATGTTGATTGGACTGTTGATTTGTATGTTATGTGTTTAGT
GTATTTTTATATGGCTTGGTTGCGTGGATGAAGGGTCTGACTGTTGATTG
GGCGGTTCGTTGGTTTTGATTGGTTGCGCAAATGAAGGTTTGATTGTTTT
ATTGGGCGTTTGGTTAATTTTGATTGGTTTGTGTTTGTGCCTTGGTTGCG
TGAATGAAGGGTTGATTGTTGAGTGGGCAGTTGCTTGGTTTTTTTAGGTT
GGTTGGTTGTTAAGTTGATTGCTTGCTTGATTGATTAATTGATTCATTAG
TTGATTGATCAATTAGTTGATTGATTATTGCTTGATGGATGGATTGCTTG
ATTGATTGATTGGGGTGATTGATTGACTGATTGATTAATTCATTAATTGA
TTGGCCAATTAGTTGATTGATGTATTGCTTGATGGTTGGATGGATTGATT
GATTGATTGGGGTGACAGATTGGGTGATTGATTGACTGCTTGCTCGTTTG
ATTCATTAATTCGTCGATTAATCCATCGAGTGATTCATTCATTCATTCAT
TCATTCATTAATGATCACACTTACAACCGACCCAGCGGCTCCGCCAATGG
CGACCGATCCCGCTCGTGGTCGGATGGGAAATCGATAAATCAACCATAGG
TACACGATACTTGTACGAGGTTCAGGGGAAAGGCTGTGCGTTCTACTTCG
ACACCACCAACCCAACACTTGTAATGCTCTCTTTCTTATGAAAAAAACGC
ATGAAAATCACGACAACATGTTGTTGATGAAAATTACCCACGTATCTGGT
CGCAGGAGTCGACAAATGGTGAATACGCGGAGAGACTCGGGGCGCTGGAC
CAGGAGAGCAGGGCTAGAGTGGACGGTCTGCTGCGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13011:1956..6844-

>mRNA_S-dermatodea_contig13011.1826.1 ID=mRNA_S-dermatodea_contig13011.1826.1|Name=mRNA_S-dermatodea_contig13011.1826.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig13011:1956..6844- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGTGATAAAGGGGCGCGCCGCCAGAGAGCTGGAGGACTTGAGGCT
GGAGAAGGAGAGCCTGCAGCTCATGAAACAGCAGCTCGCCGCGGTGCACC
AGCTCCGTTTAGACATCCAGCGGAAGGAGTCTGTCATCCAGGCGAGATTT
CGACTTCGAATGGCCAGGGAGGGGATGCGTGTGATAAAGGGGCGCGCCGC
CAGAGAGCTGGAGGACTTGAGGCTGGAGAAGGAGAGCCTGCAGCTCATGA
AACAGCAGCTCGCCGCGGTGCACCAGCTCCGTTTAGACATCCAGCGGAAG
GAGTCTGTCATCCAGGCGAGATTTCGACTTCGAATGGCCAGGGAGGGGTC
CTTGCAGCTGAAGGTCCAGGAGGGCCAGTCCGCGAAGGATAGGGCCGAGC
GGCTGGAGACGCATTGCCACCTGCTGGAGGAGAGGTGTTTGTTCCTGTCC
TTGCAGCTGAAGGTCCAGGAGGGCCAGTCCGCGAAGGATAGGGCCGAGCG
GCTGGAGACGCATTGCCACCTGCTGGAGGAGAGGTGTTTGTTCCTGGAGT
CGACAAATGGTGAATACGCGGAGAGACTCGGGGCGCTGGACCAGGAGAGC
AGGGCTAGAGTGGACGGTCTGCTGCGGTAAGAGTCGACAAATGGTGAATA
CGCGGAGAGACTCGGGGCGCTGGACCAGGAGAGCAGGGCTAGAGTGGACG
GTCTGCTGCGGTAA
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