mRNA_S-dermatodea_contig12999.1817.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12999.1817.1
Unique NamemRNA_S-dermatodea_contig12999.1817.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A6H5JJK2_9PHAE (CRM1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.640e-18
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +DILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD
Sbjct:  794 QDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 834
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BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A8J2X2G4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2G4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.560e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+LAVMTDRLHKSGFKMHATLLRH+F LVEAGHVT+ L+D
Sbjct:  959 QDVLAVMTDRLHKSGFKMHATLLRHLFHLVEAGHVTVPLFD 999
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BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: F0YR00_AURAN (CRM1_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YR00_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 2.910e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+LAVMTDRLHKSGFKMHATLLRH+F LVEAGHVT  L+D
Sbjct:  394 QDVLAVMTDRLHKSGFKMHATLLRHLFHLVEAGHVTAPLFD 434
[Close]
BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: F0YHQ5_AURAN (Importin N-terminal domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHQ5_AURAN)

HSP 1 Score: 76.6 bits (187), Expect = 2.920e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+LAVMTDRLHKSGFKMHATLLRH+F LVEAGHVT  L+D
Sbjct:  912 QDVLAVMTDRLHKSGFKMHATLLRHLFHLVEAGHVTAPLFD 952
[Close]
BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A7S3NJ13_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ13_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.900e-14
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            ++ILAV+TDRLHKSGF+MHAT+LRH+F LVEAGHVT+ LYD
Sbjct:  985 QEILAVLTDRLHKSGFRMHATILRHIFHLVEAGHVTVPLYD 1025
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BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A6U1LIT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LIT5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.630e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +DILAVMTDRLHKSGFK+HATLLRHMF LVE G VT  L+D
Sbjct:  155 QDILAVMTDRLHKSGFKLHATLLRHMFHLVEMGQVTAPLFD 195
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BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A7S2AWL8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWL8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.030e-13
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+L VMTDRLHKSGFKMHATLLRHMF +VE G VT+ L+D
Sbjct:  955 QDLLYVMTDRLHKSGFKMHATLLRHMFHVVELGQVTVPLFD 995
[Close]
BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A1Z5JBF2_FISSO (Exportin-1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBF2_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 8.030e-13
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+ AVMTDRLHKSGFKMHATLLRHMF LV+   VTL L+D
Sbjct:  933 QDVFAVMTDRLHKSGFKMHATLLRHMFHLVQMNQVTLPLFD 973
[Close]
BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A7S2R061_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R061_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-12
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+ AVMTDRLHKSGFKMH+TLLRHMF LV+   VT+ LYD
Sbjct:  666 QDVFAVMTDRLHKSGFKMHSTLLRHMFHLVQMNQVTVPLYD 706
[Close]
BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Match: A0A7S1YZH3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZH3_TRICV)

HSP 1 Score: 68.6 bits (166), Expect = 2.050e-12
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 KDILAVMTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD 123
            +D+ AVMTDRLHKSGFKMHATLLRHMF LV+   VT+ L+D
Sbjct:  952 QDVFAVMTDRLHKSGFKMHATLLRHMFHLVQMNQVTVPLFD 992
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12999.1817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJK2_9PHAE1.640e-1897.56CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A8J2X2G4_9STRA1.560e-1582.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YR00_AURAN2.910e-1582.93CRM1_C domain-containing protein n=1 Tax=Aureococc... [more]
F0YHQ5_AURAN2.920e-1582.93Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S3NJ13_9STRA1.900e-1478.05Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U1LIT5_9STRA7.630e-1480.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2AWL8_9STRA8.030e-1375.61Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JBF2_FISSO8.030e-1375.61Exportin-1 n=2 Tax=Fistulifera solaris TaxID=15195... [more]
A0A7S2R061_9STRA1.500e-1273.17Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A7S1YZH3_TRICV2.050e-1273.17Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12999contigS-dermatodea_contig12999:6500..6622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2e-09
Seed eggNOG ortholog44056.XP_009039929.1
Preferred nameXPO1
KEGG koko:K03939,ko:K14290
KEGG TC1.I.1,3.D.1.6
KEGG Pathwayko00190,ko01100,ko03008,ko03013,ko04013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05164,ko05166,ko05169,map00190,map01100,map03008,map03013,map04013,map04714,map04723,map04932,map05010,map05012,map05016,map05164,map05166,map05169
KEGG ModuleM00143
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000122,GO:0000775,GO:0000776,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009266,GO:0009408,GO:0009506,GO:0009553,GO:0009555,GO:0009628,GO:0009653,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009889,GO:0009890,GO:0009892,GO:0009932,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016049,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0022613,GO:0030054,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033750,GO:0034613,GO:0040007,GO:0042221,GO:0042254,GO:0042493,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045892,GO:0045934,GO:0046822,GO:0046825,GO:0046907,GO:0048229,GO:0048468,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0055044,GO:0060255,GO:0060341,GO:0060560,GO:0065007,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0098687,GO:0140104,GO:0140142,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03016,ko03019,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size105
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.4471757-UTR-S-dermatodea_contig12999:6499..65171622924270.4471757-UTR-S-dermatodea_contig12999:6499..6517Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12999 6500..6517 +
1694079139.8423932-UTR-S-dermatodea_contig12999:6499..65171694079139.8423932-UTR-S-dermatodea_contig12999:6499..6517Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12999 6500..6517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.458422-CDS-S-dermatodea_contig12999:6517..66221622924270.458422-CDS-S-dermatodea_contig12999:6517..6622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12999 6518..6622 +
1694079139.852436-CDS-S-dermatodea_contig12999:6517..66221694079139.852436-CDS-S-dermatodea_contig12999:6517..6622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12999 6518..6622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12999.1817.1prot_S-dermatodea_contig12999.1817.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12999 6518..6622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12999.1817.1

>prot_S-dermatodea_contig12999.1817.1 ID=prot_S-dermatodea_contig12999.1817.1|Name=mRNA_S-dermatodea_contig12999.1817.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=35bp
MTDRLHKSGFKMHATLLRHMFQLVEAGHVTLELYD
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mRNA from alignment at S-dermatodea_contig12999:6500..6622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12999.1817.1 ID=mRNA_S-dermatodea_contig12999.1817.1|Name=mRNA_S-dermatodea_contig12999.1817.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig12999:6500..6622+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGACATCCTGGCGGTGATGACGGACCGCCTCCACAAGAGTGGCTTCAA
GATGCATGCCACCCTGCTCCGGCACATGTTCCAGCTCGTTGAGGCCGGCC
ACGTGACGCTCGAGCTCTACGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12999:6500..6622+

>mRNA_S-dermatodea_contig12999.1817.1 ID=mRNA_S-dermatodea_contig12999.1817.1|Name=mRNA_S-dermatodea_contig12999.1817.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig12999:6500..6622+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGACCGCCTCCACAAGAGTGGCTTCAAGATGCATGCCACCCTGCT
CCGGCACATGTTCCAGCTCGTTGAGGCCGGCCACGTGACGCTCGAGCTCT
ACGACATGACGGACCGCCTCCACAAGAGTGGCTTCAAGATGCATGCCACC
CTGCTCCGGCACATGTTCCAGCTCGTTGAGGCCGGCCACGTGACGCTCGA
GCTCTACGAC
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