mRNA_S-dermatodea_contig9997.17912.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig9997.17912.1
Unique Name	mRNA_S-dermatodea_contig9997.17912.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.220e-66
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 1

Query:  388 REVAACLCNLSLSDQERVAVAALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASHRGI 810
            REVAACLCNLSLS+Q+RVAVAA CVPALV LSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGR MTGLMKHD+LD+FREASRAISNLLTSFEHQAVIIE GL GLNALA STD ECQYHAALS RKLSPNLASHRG+
Sbjct: 2939 REVAACLCNLSLSEQDRVAVAARCVPALVALSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRVMTGLMKHDALDVFREASRAISNLLTSFEHQAVIIEQGLAGLNALAESTDPECQYHAALSFRKLSPNLASHRGM 3079

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A7S1TZK5_9STRA (Vacuolar protein 8 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZK5_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.040e-58
Identity = 115/163 (70.55%), Postives = 135/163 (82.82%), Query Frame = 1

Query:  322 LVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVAALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASHRGI 810
            +V  G+L  L+R G+S E+EIQREVAACLCNLSLS+ +RVA+AA CV  LV LSQGGDLE ARQ++GTLAN+AE+ +TH  I K+GGGR M  LM HDS+DI REASRAISNLL+SF HQA IIEDG+PGL ALA S DAECQY+AALS RKLSPN+ASH+ I
Sbjct:    2 MVRGGLLPHLARGGQSVELEIQREVAACLCNLSLSEPDRVAIAAECVEPLVFLSQGGDLETARQSVGTLANIAEDTETHGYIGKAGGGRVMIMLMDHDSIDIHREASRAISNLLSSFHHQAEIIEDGVPGLVALATSPDAECQYNAALSFRKLSPNIASHKVI 164

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A482RX95_9ARCH (Vacuolar protein 8 (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX95_9ARCH)

HSP 1 Score: 181 bits (458), Expect = 1.220e-44
Identity = 125/311 (40.19%), Postives = 166/311 (53.38%), Query Frame = 1

Query:   10 SNDPDDQRHAAMALGNIAANEGNHPQLVARGAIQTLVALSKSLEVDVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSVNC----LAMAALRRMAIPQDNRHLLVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSD--QERVAVAALCVPALVRLSQ--------------------------GGD---------------LEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASH 801
            S+D   QR A + L N+A+NE NH  L+ +G ++   A  +SL+ D+R                                + S N     L +AA+RR+A  ++N  +L+ AGIL  L+ AG S  +EIQREVAA LC+LSLS   Q R+ +A  C+ ALVRL+                           GG+               ++ ARQAIG +ANLAEE+DTHE IAK+   RA   L    S+DI REA+RAI+NLL+SF HQA IIE+G+PGL AL+ S D E  YH+ALS RKL PN+ SH
Sbjct:  856 SSDIATQRLALLTLSNLASNEINHSALINKGYMRICTAAFQSLDEDLRTYAAFGVANLCSNPDYLALIGRQGGIPLLIHLSKSENVNTLGLGLAAMRRLANQEENWPVLISAGILDSLATAGLSQYIEIQREVAATLCSLSLSKNTQHRMEIAYKCLQALVRLASVAGSEHAAISASIEKKKKEAGVEDDLGGNSGNFVPELSAHQKSLIDIARQAIGAMANLAEEVDTHEFIAKAQASRAFIALESFHSIDIQREATRAIANLLSSFRHQATIIEEGIPGLVALSYSEDLEACYHSALSFRKLGPNMKSH 1166

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A7S4T4K8_9STRA (Vacuolar protein 8 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T4K8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.680e-40
Identity = 134/262 (51.15%), Postives = 172/262 (65.65%), Query Frame = 1

Query:   28 QRHAAMALGNIAANEGNHPQLVARGAIQTLVALSKSLEVDVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSVN----CLAMAALRRMAIPQDNRHLLVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVAALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASH 801
            +R+A M LGN+AANE NH  L+ +                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    N    CLA+ +LRR+A+  +NR  L+ +GIL++LS AG S E+EIQRE +ACLCNLSL+ + R  +   C+  L RL    D +  RQA+G LAN+ E  +TH+ + KSG   +   L++H S+DI REASRAI+NLL S      +I  GL  L +L +++D ECQY+A+LS RKLSPN  SH
Sbjct:   32 KRYAIMCLGNLAANESNHSPLLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNVHSQCLAITSLRRLALIPENRERLISSGILSILSDAGGSTEIEIQREFSACLCNLSLNVRCRADIVKTCIKELNRLLSSNDTDTVRQAMGALANITENQETHDTMQKSGTSNSTIALLQHSSMDIKREASRAIANLLGSKNQHCEVIRGGLVHLISLGVTSDPECQYNASLSFRKLSPNKDSH 293

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 4.560e-40
Identity = 105/221 (47.51%), Postives = 132/221 (59.73%), Query Frame = 1

Query:  256 SVN--CLAMAALRRMAIPQDNRHLLVEAGILAMLSRAGRSGEVE-----------------IQREVAACLCNLSL---SDQERVAVAALCVPALVRLSQGG-------------DLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASHRGIC 813
            SVN  CL +AALRR+A    N   L+E G LA L+RA                        ++RE AACLCNL+L   +  +R A+A  CVPALV L++G              D+E ARQAIG LANLAE+  TH  IA  GG  A+  +    +LD++REASRA+ NLLTS E QA ++E GLPG+  LA + DAECQYHAALSLRKL+PN A+H  +C
Sbjct: 3085 SVNAQCLGVAALRRLAAAPVNAAKLIEGGALAALARAXXXXXXXXXXXXXXXXXXXXXXXXVRREAAACLCNLTLGAAAPAQRAALADACVPALVALARGXXXXXXXXXXXXXXDVETARQAIGALANLAEDPATHARIAAEGGTEALAAVAAAAALDMYREASRAVCNLLTSAELQAAVVERGLPGIVTLASAPDAECQYHAALSLRKLTPNTAAHARLC 3305

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A8J2SEI2_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEI2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 7.210e-37
Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 1

Query:  436 RVAVAALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASHRGI 810
            R+ VA +C+PA+V L+Q GD EAARQA+G+LANLAE++ TH  +A  GG R M  L+ HD++DI REASRAI+NLLTSF HQA II DGLPGL  LAL  DAECQY+AALS RKL+PN  +H GI
Sbjct: 2979 RMDVAKVCLPAMVHLAQCGDREAARQAMGSLANLAEDMHTHTHVAAYGGARCMVALVDHDAVDIHREASRAIANLLTSFHHQATIISDGLPGLVHLALGPDAECQYNAALSFRKLTPNRDAHEGI 3103

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A812KVL6_9DINO (Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=2698737 RepID=A0A812KVL6_9DINO)

HSP 1 Score: 157 bits (396), Expect = 1.310e-36
Identity = 90/181 (49.72%), Postives = 119/181 (65.75%), Query Frame = 1

Query:  274 MAALRRMAIPQDNRHLLVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVAA--LCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASHRGI 810
            +AALRR+A    NR L VEAG L  L+ A +S  VE QRE A  + N++L D  + A AA    +  LV L Q  D E AR A G LAN+AE++ TH  I+  GGGR M GL+ H S+++ REASRA++NLL SF+    +I   LPG+  LA ++D EC+YHA+L+ RKL+PNLA+H GI
Sbjct: 3094 VAALRRLADEPGNRPLEVEAGALGALAAAAQSEHVETQRETAVAIFNVTLDDVAKPAAAADPALMGGLVVLCQSPDEEVARFACGALANIAEDLATHPSISAVGGGRFMVGLIHHGSIEVHREASRALANLLASFDVHGDVIAAALPGIARLAFTSDEECRYHASLAYRKLAPNLAAHDGI 3274

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A7S2P367_9STRA (Vacuolar protein 8 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P367_9STRA)

HSP 1 Score: 139 bits (350), Expect = 8.950e-31
Identity = 78/173 (45.09%), Postives = 110/173 (63.58%), Query Frame = 1

Query:  268 LAMAALRRMAIPQDNRHLLVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVAALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSP 786
            LA+++LR +A   +N  L +  GIL  L+ AG    VE+QRE+AACLCNLS S  + + +   C+  L+ L++  D EA RQ++G LANL E++ TH + A S   R++   + H+ +D+ REASRA+SNL+TS      I+E G+  L  L  S D EC YH ALSLRKL+P
Sbjct: 2850 LALSSLRTLAARPENCDLFIANGILTSLNYAGGCDVVEVQRELAACLCNLSASSHKLI-ITDRCIRTLLSLAKTADEEALRQSMGALANLCEDVTTHSIFAASHALRSVIDCLCHEKIDVHREASRAVSNLVTSCCFHGAILEFGMIQLLHLCSSEDKECLYHVALSLRKLAP 3021

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A2R5GK93_9STRA (Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK93_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.910e-29
Identity = 119/287 (41.46%), Postives = 169/287 (58.89%), Query Frame = 1

Query:   16 DPDDQRHAAMALGNIAANEGNHPQLVARGAIQTLV-ALSKSLEVD--------VRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSVNCLAMAALRRMAIPQDNRHLLVE--AGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVAAL--------CVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLLTSFE--HQAVIIEDGLPGLNALALSTDAECQYHAALSLRKLSPNLASHRGIC 813
            D + +R+A +ALGN+AAN  NH QL++  ++  LV AL +   VD          XXXXXXXXXXXXXXXXXXXXXX          A    C A++ALRR+     NR   +E    +L  L+ AG++G++E+QREVAA LCNLS+SD+ ++A++          C+  L+ L+Q                +AE+ +TH ++ +  G   ++ LM+   ++++REASRAISNLL S    H+  + EDGLP +  +A S D +CQ HAAL  RKLSPN+ +H  IC
Sbjct: 1910 DMEARRYATLALGNLAANPINHEQLMSCESLPPLVVALGRPGIVDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLITVAQKAPAPQAKCQAISALRRILNDDRNRDEALELRGRLLPALAEAGKTGDIEMQREVAAALCNLSVSDEAKLALSGCGSRRPNLECLRVLITLAQSTXXXXXXXXXXXXXXIAEDPETHPVLTEEQGIHFLSVLMRSRKVEVYREASRAISNLLGSMHVTHKTFLDEDGLPSVFRVAKSEDLQCQLHAALCYRKLSPNVRTHIEIC 2196

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BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Match: A0A7S3JQA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQA6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.280e-27
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 1

Query:  313 RHLLVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVAALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTGLMKHDSLDIFREASRAISNLL 663
            R  LV+A  L  ++ AG SGE+EIQREVAA LCNL+L    R+  A  C+PA+V L+Q GD E ARQA+G LANLAE  +TH  +A  GG R +  L++H  +D+ REASRAI+NLL
Sbjct:    6 RSKLVDAKALLPIADAGLSGELEIQREVAAGLCNLTLEASARMEAARCCLPAIVNLAQCGDREVARQALGALANLAESPETHAHVAACGGSRCVVALVEHTDVDVHREASRAIANLL 122

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig9997.17912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FT75_ECTSI	1.220e-66	90.78	Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 R...	[more]
A0A7S1TZK5_9STRA	1.040e-58	70.55	Vacuolar protein 8 n=2 Tax=Phaeomonas parva TaxID=...	[more]
A0A482RX95_9ARCH	1.220e-44	40.19	Vacuolar protein 8 (Fragment) n=1 Tax=archaeon Tax...	[more]
A0A7S4T4K8_9STRA	3.680e-40	51.15	Vacuolar protein 8 n=1 Tax=Ditylum brightwellii Ta...	[more]
A0A835Z6R1_9STRA	4.560e-40	47.51	Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3...	[more]
A0A8J2SEI2_9STRA	7.210e-37	64.80	Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata ...	[more]
A0A812KVL6_9DINO	1.310e-36	49.72	Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=26...	[more]
A0A7S2P367_9STRA	8.950e-31	45.09	Vacuolar protein 8 n=2 Tax=Leptocylindrus danicus ...	[more]
A0A2R5GK93_9STRA	2.910e-29	41.46	Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana ...	[more]
A0A7S3JQA6_9STRA	1.280e-27	54.70	Hypothetical protein (Fragment) n=1 Tax=Aureoumbra...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig9997	contig	S-dermatodea_contig9997:3746..6291 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	247.3
Seed ortholog evalue	1.7e-62
Seed eggNOG ortholog	2880.D7FT75
KEGG ko	ko:K08332
EggNOG free text desc.	nucleus-vacuole junction assembly
EggNOG OGs	KOG0167@1,KOG0167@2759,KOG4224@1,KOG4224@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03029,ko04131
Hectar predicted targeting category	other localisation
Exons	4
Model size	1686
Cds size	1686
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig9997.17912.1	prot_S-dermatodea_contig9997.17912.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig9997 3746..6291 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622925442.55681-CDS-S-dermatodea_contig9997:3745..4009	1622925442.55681-CDS-S-dermatodea_contig9997:3745..4009	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 3746..4009 +
1694079936.7275808-CDS-S-dermatodea_contig9997:3745..4009	1694079936.7275808-CDS-S-dermatodea_contig9997:3745..4009	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 3746..4009 +
1622925442.5669448-CDS-S-dermatodea_contig9997:4292..4421	1622925442.5669448-CDS-S-dermatodea_contig9997:4292..4421	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 4293..4421 +
1694079936.7476692-CDS-S-dermatodea_contig9997:4292..4421	1694079936.7476692-CDS-S-dermatodea_contig9997:4292..4421	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 4293..4421 +
1622925442.5767136-CDS-S-dermatodea_contig9997:4762..5299	1622925442.5767136-CDS-S-dermatodea_contig9997:4762..5299	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 4763..5299 +
1694079936.7618074-CDS-S-dermatodea_contig9997:4762..5299	1694079936.7618074-CDS-S-dermatodea_contig9997:4762..5299	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 4763..5299 +
1622925442.5869136-CDS-S-dermatodea_contig9997:5535..6291	1622925442.5869136-CDS-S-dermatodea_contig9997:5535..6291	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 5536..6291 +
1694079936.7799692-CDS-S-dermatodea_contig9997:5535..6291	1694079936.7799692-CDS-S-dermatodea_contig9997:5535..6291	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig9997 5536..6291 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig9997:3746..6291+
coding sequence from alignment at S-dermatodea_contig9997:3746..6291+

protein sequence of mRNA_S-dermatodea_contig9997.17912.1

>prot_S-dermatodea_contig9997.17912.1 ID=prot_S-dermatodea_contig9997.17912.1|Name=mRNA_S-dermatodea_contig9997.17912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=562bp
MAASNDPDDQRHAAMALGNIAANEGNHPQLVARGAIQTLVALSKSLEVDV
REYAGFALANLASNADYLDAIGAKGGIDPLVKLAGSVNCLAMAALRRMAI
PQDNRHLLVEAGILAMLSRAGRSGEVEIQREVAACLCNLSLSDQERVAVA
ALCVPALVRLSQGGDLEAARQAIGTLANLAEEIDTHELIAKSGGGRAMTG
LMKHDSLDIFREASRAISNLLTSFEHQAVIIEDGLPGLNALALSTDAECQ
YHAALSLRKLSPNLASHRGICYGGGLKALFHLVKAKDLKTRRQAATALRD
LCAHADHKLKIADEGGMDALVSAALEREIELQILAVAGLRHLSLHDPLKR
AIIEAGALRPIVRCIKWANEDLQCQLAAALANLSEEVQNQITMVEDGAVQ
ALVVLARAENDEIQQDCSRALSNLSSNEENHPLVYRLGGLRALIGLTDST
EDVCQRYAAFGLRFLCSNPEVRVSIVQDGLIKPFLALAQSPLIEYQRTAA
AAFASFSLNDENKQKMVRESCLGQILACCLYSDLEVVRNCTFSLANLADS
LDLQSDVVREGG

mRNA from alignment at S-dermatodea_contig9997:3746..6291+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig9997.17912.1 ID=mRNA_S-dermatodea_contig9997.17912.1|Name=mRNA_S-dermatodea_contig9997.17912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2546bp|location=Sequence derived from alignment at S-dermatodea_contig9997:3746..6291+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGCAAGCAACGATCCCGATGACCAGCGACACGCCGCTATGGCCCT
TGGGAACATAGCGGCCAACGAGGGAAACCACCCGCAGCTAGTGGCGAGGG
GGGCGATTCAGACCCTCGTAGCGCTGTCGAAGTCCCTCGAGGTGGACGTC
CGCGAGTACGCAGGGTTCGCGCTGGCGAATCTTGCCAGCAATGCGGACTA
CCTTGACGCCATCGGTGCAAAGGGGGGTATTGATCCGCTGGTCAAGTTAG
CGGGTTCTGTGAACGTTCATACTCAGGCGAGATTTACATAAAACGTTACG
GGTGTAGGATATGGATCGAAGATGGATCAAAGTCCGTTCTTCACCTTAAA
AATGAATTCCAAAACCGCTGGGGTTGGGACGACATATGCAGGAGGGACGT
TGTTGCCTGACCAGTACACATAACCACACACTGAGGCCATTGTAGCAGTC
TGTCGCTCGCGATGCGCAGGCAGCACTGCAGGAATGACTTGTGTACCCTA
ATTCACCCTTTTCTCGCAACTGCCATTGTCGTCCTCCGACACAACAGTGT
CTCGCCATGGCAGCCTTGCGCCGGATGGCCATACCTCAAGATAATCGCCA
CCTCTTGGTAGAAGCTGGGATTTTGGCAATGCTATCTCGCGCAGGACGTA
GTGGCGAGGTCGAGATACAGCGAGAGGTAACTGGTTGGTCACGCGATCAT
AAGTCAATCCCCTGTTCCGTTCGTCTCTATAAAACCATGCGTACGTTTTA
CTTAGGGTTGGCGTACAATTTTGCAGAAGGGAAAACCTGGAGCGTCTCCT
GCACCGAAGTGAGCGGATTCCACGGAATTTTAGCTTCGATTGAGAGTCGT
GGACGTACTGTTTTGAGCGCATCGCAGGCACGTCGTTGTTGACCCACGCA
CTAGCTGTCGAACACTCATCCGAGGCTTGTATTTTCCCTGGCTACCTCTC
TTCTCTTCCGTGTTGATTTACATATAGGTAACATCATTTATTTGTTCACA
CCCTCCCTCGTTCGCAGGTGGCGGCGTGTCTGTGCAACCTATCGCTTAGC
GACCAGGAGCGAGTTGCGGTGGCTGCGCTCTGCGTGCCCGCCTTGGTGCG
ACTGTCACAGGGGGGCGACCTAGAAGCAGCGAGGCAGGCAATAGGTACCC
TTGCTAACCTTGCCGAAGAAATCGACACGCACGAGCTGATTGCCAAATCC
GGGGGCGGGCGAGCGATGACGGGGCTCATGAAGCACGACTCGCTCGACAT
TTTCCGAGAAGCGAGCCGCGCCATTTCCAACCTCCTGACGAGCTTCGAGC
ACCAAGCTGTGATAATTGAAGACGGGCTTCCTGGGTTGAACGCGCTCGCC
CTTAGTACAGATGCCGAGTGCCAATACCACGCCGCTCTCAGCTTGCGCAA
GCTGTCGCCGAACCTTGCGTCCCACCGGGGTATCTGCTACGGGGGCGGCT
TGAAGGCCTTGTTTCACCTCGTCAAGGCAAAAGATTTGAAGACAAGGAGG
CAGGCGGCCACAGCGTTACGGGATCTCTGTGCACACGCGGACCACAAGTT
GAAGGTGGGAGACTGTGTTTCTCTCCAAATACGTTTGCAAAACTACTTGT
ATATACGATGTGGAAGTCTCCAGCTGGATCTACGTTGGTAAGAGTACACG
TGATCGAGGAAAAAATTGTTGCTGGACGCAATTATGCAGCTGTTGTTGAA
GCGCCACGCTGTAAAAATATTTCAACGAAGTGTCCCCCAGTTTACCCGCC
CTCAACCTCGCGTGGTATATTCGATTTTTCTCATGAGTAGATCGCAGACG
AAGGCGGGATGGATGCTCTCGTGTCGGCAGCTTTAGAGCGCGAAATCGAG
CTGCAGATCTTGGCGGTGGCAGGGCTACGACACCTGTCTCTTCACGACCC
ATTGAAACGTGCCATCATTGAAGCGGGGGCGCTGAGACCGATCGTACGCT
GCATAAAGTGGGCAAACGAAGACCTCCAGTGTCAGCTTGCGGCTGCCCTA
GCCAATCTGTCCGAAGAGGTCCAGAACCAGATCACAATGGTTGAGGACGG
CGCCGTTCAGGCGCTGGTAGTCCTCGCGAGAGCCGAGAACGACGAGATTC
AGCAGGACTGCTCCAGGGCGCTTAGTAACCTGAGCAGTAATGAGGAAAAT
CACCCACTGGTGTACCGGCTAGGGGGCTTGCGCGCACTGATCGGGCTCAC
GGACTCAACCGAGGACGTGTGTCAGAGGTACGCGGCGTTCGGCCTCCGGT
TCTTGTGCAGTAACCCGGAAGTGCGCGTGAGTATTGTCCAGGACGGCTTG
ATCAAGCCCTTCCTGGCACTTGCGCAGAGCCCTTTGATAGAATACCAACG
TACAGCGGCAGCGGCCTTCGCCAGCTTCTCCCTGAACGACGAAAACAAGC
AGAAAATGGTGCGAGAGAGCTGCCTTGGGCAGATTCTGGCGTGTTGCCTC
TACTCGGACCTCGAGGTCGTTAGAAACTGCACCTTTAGCCTCGCGAATCT
TGCAGACTCGTTGGACCTACAGAGCGACGTCGTGCGAGAGGGGGGT

Coding sequence (CDS) from alignment at S-dermatodea_contig9997:3746..6291+

>mRNA_S-dermatodea_contig9997.17912.1 ID=mRNA_S-dermatodea_contig9997.17912.1|Name=mRNA_S-dermatodea_contig9997.17912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3372bp|location=Sequence derived from alignment at S-dermatodea_contig9997:3746..6291+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGCAAGCAACGATCCCGATGACCAGCGACACGCCGCTATGGCCCT
TGGGAACATAGCGGCCAACGAGGGAAACCACCCGCAGCTAGTGGCGAGGG
GGGCGATTCAGACCCTCGTAGCGCTGTCGAAGTCCCTCGAGGTGGACGTC
CGCGAGTACGCAGGGTTCGCGCTGGCGAATCTTGCCAGCAATGCGGACTA
CCTTGACGCCATCGGTGCAAAGGGGGGTATTGATCCGCTGGTCAAGTTAG
CGGGTTCTGTGAACATGGCGGCAAGCAACGATCCCGATGACCAGCGACAC
GCCGCTATGGCCCTTGGGAACATAGCGGCCAACGAGGGAAACCACCCGCA
GCTAGTGGCGAGGGGGGCGATTCAGACCCTCGTAGCGCTGTCGAAGTCCC
TCGAGGTGGACGTCCGCGAGTACGCAGGGTTCGCGCTGGCGAATCTTGCC
AGCAATGCGGACTACCTTGACGCCATCGGTGCAAAGGGGGGTATTGATCC
GCTGGTCAAGTTAGCGGGTTCTGTGAACTGTCTCGCCATGGCAGCCTTGC
GCCGGATGGCCATACCTCAAGATAATCGCCACCTCTTGGTAGAAGCTGGG
ATTTTGGCAATGCTATCTCGCGCAGGACGTAGTGGCGAGGTCGAGATACA
GCGAGAGTGTCTCGCCATGGCAGCCTTGCGCCGGATGGCCATACCTCAAG
ATAATCGCCACCTCTTGGTAGAAGCTGGGATTTTGGCAATGCTATCTCGC
GCAGGACGTAGTGGCGAGGTCGAGATACAGCGAGAGGTGGCGGCGTGTCT
GTGCAACCTATCGCTTAGCGACCAGGAGCGAGTTGCGGTGGCTGCGCTCT
GCGTGCCCGCCTTGGTGCGACTGTCACAGGGGGGCGACCTAGAAGCAGCG
AGGCAGGCAATAGGTACCCTTGCTAACCTTGCCGAAGAAATCGACACGCA
CGAGCTGATTGCCAAATCCGGGGGCGGGCGAGCGATGACGGGGCTCATGA
AGCACGACTCGCTCGACATTTTCCGAGAAGCGAGCCGCGCCATTTCCAAC
CTCCTGACGAGCTTCGAGCACCAAGCTGTGATAATTGAAGACGGGCTTCC
TGGGTTGAACGCGCTCGCCCTTAGTACAGATGCCGAGTGCCAATACCACG
CCGCTCTCAGCTTGCGCAAGCTGTCGCCGAACCTTGCGTCCCACCGGGGT
ATCTGCTACGGGGGCGGCTTGAAGGCCTTGTTTCACCTCGTCAAGGCAAA
AGATTTGAAGACAAGGAGGCAGGCGGCCACAGCGTTACGGGATCTCTGTG
CACACGCGGACCACAAGTTGAAGGTGGCGGCGTGTCTGTGCAACCTATCG
CTTAGCGACCAGGAGCGAGTTGCGGTGGCTGCGCTCTGCGTGCCCGCCTT
GGTGCGACTGTCACAGGGGGGCGACCTAGAAGCAGCGAGGCAGGCAATAG
GTACCCTTGCTAACCTTGCCGAAGAAATCGACACGCACGAGCTGATTGCC
AAATCCGGGGGCGGGCGAGCGATGACGGGGCTCATGAAGCACGACTCGCT
CGACATTTTCCGAGAAGCGAGCCGCGCCATTTCCAACCTCCTGACGAGCT
TCGAGCACCAAGCTGTGATAATTGAAGACGGGCTTCCTGGGTTGAACGCG
CTCGCCCTTAGTACAGATGCCGAGTGCCAATACCACGCCGCTCTCAGCTT
GCGCAAGCTGTCGCCGAACCTTGCGTCCCACCGGGGTATCTGCTACGGGG
GCGGCTTGAAGGCCTTGTTTCACCTCGTCAAGGCAAAAGATTTGAAGACA
AGGAGGCAGGCGGCCACAGCGTTACGGGATCTCTGTGCACACGCGGACCA
CAAGTTGAAGATCGCAGACGAAGGCGGGATGGATGCTCTCGTGTCGGCAG
CTTTAGAGCGCGAAATCGAGCTGCAGATCTTGGCGGTGGCAGGGCTACGA
CACCTGTCTCTTCACGACCCATTGAAACGTGCCATCATTGAAGCGGGGGC
GCTGAGACCGATCGTACGCTGCATAAAGTGGGCAAACGAAGACCTCCAGT
GTCAGCTTGCGGCTGCCCTAGCCAATCTGTCCGAAGAGGTCCAGAACCAG
ATCACAATGGTTGAGGACGGCGCCGTTCAGGCGCTGGTAGTCCTCGCGAG
AGCCGAGAACGACGAGATTCAGCAGGACTGCTCCAGGGCGCTTAGTAACC
TGAGCAGTAATGAGGAAAATCACCCACTGGTGTACCGGCTAGGGGGCTTG
CGCGCACTGATCGGGCTCACGGACTCAACCGAGGACGTGTGTCAGAGGTA
CGCGGCGTTCGGCCTCCGGTTCTTGTGCAGTAACCCGGAAGTGCGCGTGA
GTATTGTCCAGGACGGCTTGATCAAGCCCTTCCTGGCACTTGCGCAGAGC
CCTTTGATAGAATACCAACGTACAGCGGCAGCGGCCTTCGCCAGCTTCTC
CCTGAACGACGAAAACAAGCAGAAAATGGTGCGAGAGAGCTGCCTTGGGC
AGATTCTGGCGTGTTGCCTCTACTCGGACCTCGAGGTCGTTAGAAACTGC
ACCTTTAGCCTCGCGAATCTTGCAGACTCGTTGGACCTACAGAGCGACGT
CGTGCGAGAGGGGGGTATCGCAGACGAAGGCGGGATGGATGCTCTCGTGT
CGGCAGCTTTAGAGCGCGAAATCGAGCTGCAGATCTTGGCGGTGGCAGGG
CTACGACACCTGTCTCTTCACGACCCATTGAAACGTGCCATCATTGAAGC
GGGGGCGCTGAGACCGATCGTACGCTGCATAAAGTGGGCAAACGAAGACC
TCCAGTGTCAGCTTGCGGCTGCCCTAGCCAATCTGTCCGAAGAGGTCCAG
AACCAGATCACAATGGTTGAGGACGGCGCCGTTCAGGCGCTGGTAGTCCT
CGCGAGAGCCGAGAACGACGAGATTCAGCAGGACTGCTCCAGGGCGCTTA
GTAACCTGAGCAGTAATGAGGAAAATCACCCACTGGTGTACCGGCTAGGG
GGCTTGCGCGCACTGATCGGGCTCACGGACTCAACCGAGGACGTGTGTCA
GAGGTACGCGGCGTTCGGCCTCCGGTTCTTGTGCAGTAACCCGGAAGTGC
GCGTGAGTATTGTCCAGGACGGCTTGATCAAGCCCTTCCTGGCACTTGCG
CAGAGCCCTTTGATAGAATACCAACGTACAGCGGCAGCGGCCTTCGCCAG
CTTCTCCCTGAACGACGAAAACAAGCAGAAAATGGTGCGAGAGAGCTGCC
TTGGGCAGATTCTGGCGTGTTGCCTCTACTCGGACCTCGAGGTCGTTAGA
AACTGCACCTTTAGCCTCGCGAATCTTGCAGACTCGTTGGACCTACAGAG
CGACGTCGTGCGAGAGGGGGGT