mRNA_S-dermatodea_contig995.17874.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig995.17874.1
Unique NamemRNA_S-dermatodea_contig995.17874.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig995.17874.1 vs. uniprot
Match: D7FNH3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH3_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 5.740e-100
Identity = 363/906 (40.07%), Postives = 450/906 (49.67%), Query Frame = 1 
Query:  190 AADCIQHAW-RASREQQVVARVTGSVSVIQKSWRMHSRRRRAGSQAVRAWRRRARVRARTLDQALIEAAGEGDLRAVAFLLR-PAVGWKAG--------ADANAT-DVDRATALHAACRGR------------------------QTEIKTKGTTDQTPSV-----SGLGAIGDDSPANAGGGGGE-----RTHA-DWVGVIRALVEAGASVEAKDVWGFTPILTAAGTAGGQIVAALADLGAEVDISEDRSMKRTPLVIATQRANVSAAAALLEYGARVNLPAGDGLTPLHEAVGAGSVAIAEMMVRAGAQVDATSDSAXXXXXXXXXXXXXXXXXXXXXXXXXNVCLPDARXXXXXXXTVEMADAATLALLLSAERRADLSIEDENQGTVLHAACRLGLTDIAQLLLESGANPHARDAHGQTPELVALDLGHDECAGLFCQLEVGLFV-----LQSEKSESVPATSAGEESSEAMLLGERHGSGDTDVG---REDAPGVEVGKRDDEVNNAREEGGLVVEPERSGGEEEQQYGRLEPEDGAEWTLDTYREHGEEKIAKEHFPEAVDGAPLLSSGVLPA-DHQQVLTMSSVG----GGDETEWNPNQLIDGPDT-HSRGSVDQTETQEGGEWEWSSTEGW-------KGHPGVSEPSQAIVVIEGREPPPPAEPATAENGV---DHDLRDSESCSEMQLYSNENDVGESLIDESTHGWVQTP-DRKWEAEPT--AEEGGGICDDDPGGRGPENPADAGSGIVTYTPESYEH--EQGGESGGVDRREGNAQ---ETPAEVWRGGRGNDDAHQSEHDEYNDNKGSEEGEQSTALDAEPVLHNGLDGDEEMSRRGTMGWSGIAATLRAKHSWMSIVDRESGSVYYQNQRSGATQWEPPAEDGAVVVPE 2673
            AA  IQ A  RA RE+++ AR + S S+IQ+ WR+ SRR RAG + VRAWR R R R  TLD+AL+EAA EGDLRAVAFLL  PA     G        AD NA    D  TALHAA  G                         ++ +  +G++   P       SG    GD S  +    G       R HA +W GVI+ALVEAGA+VEA+D  GFTP++TA      + VAALA++GAEVD  E R  KRTP                    ARVNL  GDGLTPLHEAVGAGS+ +AEM+VRAGA V+AT++SAXXXXXXXXXXXXXXXXXXXXXXXXX VCLPDAR       T+EMADA T+ALLL+AE  ADLS+ DEN GTVLHAACRLGLTDIA+LLLE GA+PH RDA G+TPELVALDL H +CAGLF  +++  +      + S+ S    A   GE   E     E    G+  +G    +D  G +  +                + +R    +E    R E E+   W  D  RE          F EAV  A   SS  +PA D  +V   S +G    G   TE + +    G D  + RG VD  E  EG EW WS  EGW        G P  S       + E    P   E A+  + +    H   D +   +   Y   N   +S      + W +   DR  E E    AEEGG                  GS   T   ES     E+G E G       NA    +  A     G  ++D  +S H      +GS EG  +TA      + NG       + R +  +  I    +A+  W+  +D  SGSVYYQN+ SG TQW+ P ED  VV  E
Sbjct: 1107 AAATIQRALLRAPRERRIAARASNSASLIQRMWRLQSRRWRAGFRLVRAWRARNRARVATLDRALVEAASEGDLRAVAFLLHAPAATVTIGSWVRLGGAADVNAVAGNDHETALHAAAAGSGGWSGEGHRHAPTTGVEIRVRDGAESAVGRRGSSTLAPMAPAAAKSGTNLAGDLSDVDGQRNGSGHWLRGRGHAPNWAGVIQALVEAGAAVEARDRRGFTPMMTAGEKGSRETVAALANIGAEVDSKEVRGGKRTPXXXXXXXXXXXXXXXXXXXXARVNLTVGDGLTPLHEAVGAGSIDVAEMLVRAGANVNATNESAXXXXXXXXXXXXXXXXXXXXXXXXXXVCLPDARGLTCLRLTIEMADAPTVALLLAAEPPADLSVTDENGGTVLHAACRLGLTDIARLLLEHGADPHVRDARGRTPELVALDLDHGDCAGLFYNVDIHSYTPHDGGVGSDNSSKESAQRDGEARGEDNRRKENRHDGERGIGGSNSDDDSGTDTAQGP--AGXXXXXXXXXXQWDRDTAYQE----REETEEEGAWVADNLREG---------FAEAVAAARRASSLSMPAQDQAEVEGSSYIGEYAEGALNTEKSKSYESKGWDEGNGRGGVDAEE--EGSEWIWSEAEGWIRGAGSGSGDPAASRAQPPEAINEENRGPGTTEAASVADDLYTEPHQSADWQQSYDYSRYGASNSGSDSNNPGYRNSWAENERDRGTELERQEGAEEGGXXXX-------------GGSFEATIDAESASPGIEEGQEQGANKSFHPNADGINDVAAGDDAVGLDHEDGDKSGHGTSGSLEGSVEGMAATAR-----ISNG-----NANHRPSNAFGTIVEAAKARKRWIPQLDEVSGSVYYQNEESGLTQWDVP-EDAVVVAAE 1971
[Close]
BLAST of mRNA_S-dermatodea_contig995.17874.1 vs. uniprot
Match: A0A6H5L5M5_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M5_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.810e-80
Identity = 320/901 (35.52%), Postives = 407/901 (45.17%), Query Frame = 1 
Query:  190 AADCIQHA-WRASREQQVVARVTGSVSVIQKSWRMHSRRRRAGSQAVRAWRRRARVRARTLDQALIEAAGEGDLRAVAFLLRPAVG------WK---AGADANAT-DVDRATALHAACRG------------------------RQTEIKTKGTTDQTPSV----SGLGAIGD--DSPANAGGGG----GERTHADWVGVIRALVEAGASVEAKDVWGFTPILTAAGTAGGQIVAALADLGAEVDISEDRSMKRTPLVIATQRA-NVSAAAALLEYGARVNLPAGDGLTPLHEAVGAGSVAIAEMMVRAGAQVDATSDSAXXXXXXXXXXXXXXXXXXXXXXXXXNVCLPDARXXXXXXXTVEMADAATLALLLSAERRADLSIEDENQGTVLHAACRLGLTDIAQLLLESGANPHARDAHGQTPELVALDLGHDECAGLFCQLEVGLFVLQ-----SEKSESVPATSAGEESSEAMLLGE-RHGSGDTDVGR-EDAPGVEVGKRDDEVNNAREEGGLVVEPERSGGEEEQQYGRLEPEDGAEWTLDTYREHGEEKIAKEHFPEAVDGAPLLSSGVLPADHQQVLTMSSVGGGDE----TEWNPNQLIDG-PDTHSRGSVDQTETQEGGEWEWSSTEGW-------KGHPGVSEPSQAIVVIEGREPPPPAEPATAENGVDHDLRDSESCSEMQLYSN---ENDVGESLIDESTHGWVQTP-DRKWEAEPT--AEEGGGICDDDPGGRGPENPADAGSGIVTYTPESYEHEQGGESGGVDRREGNAQETPAEVWRGGRGNDDAHQSEHDEYNDNKGSEEGEQSTALD--AEPVLHNGLDGDEEMSRRGTMGWSGIAATLRAKHSWMSIVDRESGSVYYQNQRSGATQWEPPAEDGAVVVPE 2673
            AA  IQ A WRA RE+++ AR + S S+IQ+ WR+ SRR RAG + VRAWR R R R  TLD+AL+EAA EGDLRAVAFLL P         W      +D NA    D  TALHAA  G                         +  +  +G++   P      SG    GD  D        G    G     +W GVI+ALVEAGA+VEA+D  GFTP++TA      + VAALA+ GAEVD  E R  KRTPLVIA QRA N +  +A              G+TPLH AV     A A ++V +GA                                  NVCLPDAR       ++EMADA T+ALLL+AE  ADLS++DEN GTVLHAACRLGLTDIA+LLLE GA+PHARDA G+TPELVALDL H +CAGLF  +++  ++       +   ES P    GE   E     E RHG  D D    +D  G++  +R  E               +   +   Q         A W  D  RE          F EAV  A   SS  +PA    V   S +G   E    TE + +    G  + + RG VD  E  EG EW WS  EGW        G P  S         E    P   E A     +  + R S    +   YS+    N   +S      + W +   DR  E E    AEEGG     D GG G      + +  +     S   E+G E G       NA +    +     G+D     + D      G+ E  +       A   + NG     + + R ++ +  I    + ++ W+  VD  SGSVYYQN+ SG TQW+ P ED  VV  E
Sbjct: 1242 AAVTIQRALWRAPRERRIAARASNSASLIQRMWRLQSRRWRAGFRLVRAWRARVRARVATLDRALVEAASEGDLRAVAFLLHPPAATVTIGSWVRLGGASDVNAVAGSDSETALHAAAAGGGGWSGEDHRHAPATWVENRVRDGAEAAVGRRGSSTLAPMAPAAKSGTNLAGDLSDVDGRRDDSGHWLRGRGNAPNWAGVIQALVEAGAAVEARDRRGFTPMMTAGEKGNRETVAALANSGAEVDAKEARGGKRTPLVIAAQRAVNATNESA--------------GMTPLHLAVVNDQHAAARLLVHSGA----------------------------------NVCLPDARGLTCLRLSIEMADAPTVALLLAAEPPADLSVKDENGGTVLHAACRLGLTDIARLLLEHGADPHARDARGRTPELVALDLDHGDCAGLFYNVDIHSYIPNDGGGDNSSKESTPWD--GEARGEDNRRNENRHGERDIDGSNSDDDSGIDKAQRAAEGAAVXXXXXXXXXXXKWDRDTAYQXXXXXXXXXA-WATDNLREG---------FAEAVGAARRASSLSMPAQ-AGVEGSSYIGEYTERALHTEISKSYESKGWHEGNGRGGVDAEE--EGPEWIWSEVEGWIRGAGSGSGDPAASRAQPPAAPNEDNRGPGATEAAAVAGDLYTEPRQSADWQQSYDYSSYGATNGGSDSNDPGYRNSWAEYERDRGTELERQEGAEEGG-----DYGGGG------SFAATIEANSASPGIEEGQEQGANMPFYPNADD----INNVAAGDDVMGLDDEDGDKGGDGTSESLEGXXXGTVATTRISNG-----DANHRPSIEFGTIVEAAKTRNRWIPQVDEVSGSVYYQNEESGLTQWDVP-EDAVVVAAE 2058
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig995.17874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNH3_ECTSI5.740e-10040.07Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L5M5_9PHAE1.810e-8035.52WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig995contigS-dermatodea_contig995:118..6924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.9
Seed ortholog evalue4.3e-100
Seed eggNOG ortholog2880.D7FNH3
KEGG koko:K21440
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size2673
Cds size2673
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig995.17874.1prot_S-dermatodea_contig995.17874.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig995 118..6924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925439.1905792-CDS-S-dermatodea_contig995:117..9631622925439.1905792-CDS-S-dermatodea_contig995:117..963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 118..963 +
1694079934.3219993-CDS-S-dermatodea_contig995:117..9631694079934.3219993-CDS-S-dermatodea_contig995:117..963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 118..963 +
1622925439.2009141-CDS-S-dermatodea_contig995:1425..15661622925439.2009141-CDS-S-dermatodea_contig995:1425..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 1426..1566 +
1694079934.3417459-CDS-S-dermatodea_contig995:1425..15661694079934.3417459-CDS-S-dermatodea_contig995:1425..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 1426..1566 +
1622925439.2124197-CDS-S-dermatodea_contig995:1881..21061622925439.2124197-CDS-S-dermatodea_contig995:1881..2106Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 1882..2106 +
1694079934.356334-CDS-S-dermatodea_contig995:1881..21061694079934.356334-CDS-S-dermatodea_contig995:1881..2106Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 1882..2106 +
1622925439.2216115-CDS-S-dermatodea_contig995:2586..32701622925439.2216115-CDS-S-dermatodea_contig995:2586..3270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 2587..3270 +
1694079934.3660681-CDS-S-dermatodea_contig995:2586..32701694079934.3660681-CDS-S-dermatodea_contig995:2586..3270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 2587..3270 +
1622925439.2310512-CDS-S-dermatodea_contig995:5931..63581622925439.2310512-CDS-S-dermatodea_contig995:5931..6358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 5932..6358 +
1694079934.3762364-CDS-S-dermatodea_contig995:5931..63581694079934.3762364-CDS-S-dermatodea_contig995:5931..6358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 5932..6358 +
1622925439.244127-CDS-S-dermatodea_contig995:6574..69241622925439.244127-CDS-S-dermatodea_contig995:6574..6924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 6575..6924 +
1694079934.3864315-CDS-S-dermatodea_contig995:6574..69241694079934.3864315-CDS-S-dermatodea_contig995:6574..6924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 6575..6924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig995.17874.1

>prot_S-dermatodea_contig995.17874.1 ID=prot_S-dermatodea_contig995.17874.1|Name=mRNA_S-dermatodea_contig995.17874.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=891bp
MHAQGQLLRSTLSFGSSPANTTTPLDLATAKMATGVVDAFKAQPGSTTGA
FRRRKADAPKPAVAADCIQHAWRASREQQVVARVTGSVSVIQKSWRMHSR
RRRAGSQAVRAWRRRARVRARTLDQALIEAAGEGDLRAVAFLLRPAVGWK
AGADANATDVDRATALHAACRGRQTEIKTKGTTDQTPSVSGLGAIGDDSP
ANAGGGGGERTHADWVGVIRALVEAGASVEAKDVWGFTPILTAAGTAGGQ
IVAALADLGAEVDISEDRSMKRTPLVIATQRANVSAAAALLEYGARVNLP
AGDGLTPLHEAVGAGSVAIAEMMVRAGAQVDATSDSAGMTPLHLALANGQ
YAAARLLVHAGANVCLPDARGMTPLRLTVEMADAATLALLLSAERRADLS
IEDENQGTVLHAACRLGLTDIAQLLLESGANPHARDAHGQTPELVALDLG
HDECAGLFCQLEVGLFVLQSEKSESVPATSAGEESSEAMLLGERHGSGDT
DVGREDAPGVEVGKRDDEVNNAREEGGLVVEPERSGGEEEQQYGRLEPED
GAEWTLDTYREHGEEKIAKEHFPEAVDGAPLLSSGVLPADHQQVLTMSSV
GGGDETEWNPNQLIDGPDTHSRGSVDQTETQEGGEWEWSSTEGWKGHPGV
SEPSQAIVVIEGREPPPPAEPATAENGVDHDLRDSESCSEMQLYSNENDV
GESLIDESTHGWVQTPDRKWEAEPTAEEGGGICDDDPGGRGPENPADAGS
GIVTYTPESYEHEQGGESGGVDRREGNAQETPAEVWRGGRGNDDAHQSEH
DEYNDNKGSEEGEQSTALDAEPVLHNGLDGDEEMSRRGTMGWSGIAATLR
AKHSWMSIVDRESGSVYYQNQRSGATQWEPPAEDGAVVVPE
back to top

mRNA from alignment at S-dermatodea_contig995:118..6924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig995.17874.1 ID=mRNA_S-dermatodea_contig995.17874.1|Name=mRNA_S-dermatodea_contig995.17874.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6807bp|location=Sequence derived from alignment at S-dermatodea_contig995:118..6924+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATGCACAGGGCCAGCTCCTTCGATCGACGCTGTCATTCGGTTCTTC
ACCCGCGAACACGACCACACCTCTAGACCTCGCGACCGCCAAAATGGCCA
CCGGAGTCGTCGACGCGTTTAAAGCGCAACCTGGTAGCACCACTGGCGCG
TTCCGCAGACGCAAGGCGGACGCCCCAAAACCTGCCGTTGCCGCCGATTG
CATTCAGCATGCTTGGAGAGCGTCACGCGAGCAACAAGTGGTCGCGAGAG
TTACCGGCAGTGTTTCAGTTATACAGAAATCCTGGAGGATGCACTCCAGA
AGGCGCCGTGCAGGATCTCAAGCGGTACGGGCTTGGCGCCGACGAGCCCG
CGTCCGGGCACGAACGCTCGACCAGGCGCTCATCGAGGCGGCAGGTGAAG
GAGATTTGCGTGCCGTTGCTTTCCTGCTGCGTCCCGCGGTGGGGTGGAAA
GCAGGGGCCGACGCAAACGCGACGGACGTCGACAGAGCGACCGCCCTGCA
TGCAGCTTGTCGAGGGCGGCAGACGGAGATAAAAACAAAAGGCACAACCG
ACCAAACTCCATCCGTCTCCGGACTGGGAGCGATTGGAGACGACTCACCG
GCGAACGCGGGTGGCGGTGGCGGAGAAAGAACTCACGCCGACTGGGTCGG
AGTTATACGGGCTTTGGTGGAAGCGGGGGCGTCCGTGGAAGCCAAGGATG
TGTGGGGGTTCACGCCAATACTAACAGCCGCTGGGACGGCGGGCGGACAG
ATCGTTGCTGCTCTAGCAGACCTCGGCGCGGAGGTCGACATATCGGAAGA
CAGAAGCATGAAAAGGACGCCGCTTGTCATCGCAACGCAGAGAGCTGTGA
GTATCGCGCGCTTCCGAGTTTCCCCCCCGCTTTCATCAGGCCAACCTTAA
ACCGCTCGTTTTCGCTTTCGTTCATTGTGCAGGTCCACAGTCGATTTTTG
TGACGTTGACACAGAGGGTGTAGCCCACGAGGATTGCACACAGCCGCTTC
CCGGCTAATGTCGACATTTTCTCGCATTTCACCTTTGGCGTTTTAGATGT
GTCGGTCTTCTTGCCGGTCAACACGTGGAGCATTGCTCTATTATCATAGA
ACGTAGGAGCGCAAGGGCCCAACAATCAGCAATGCACGTATTCGAGGGGT
GAGACAGAGCCTGTGCAGATTATGCCTCGGTGAACCTCGGCTGCCAGTCT
GCTAATGTCGGATTACTGCAAATGTTGGGGAAATGTTATTGAAAAATGCG
ACGCGAAGATCTCCTGAAGCCAACTAAATAGGGATGCTATCTGTCTGACG
CAAAACAGAACGTTTCGGCGGCGGCCGCTCTATTGGAGTACGGAGCCAGG
GTGAACCTCCCTGCCGGGGACGGATTGACGCCACTTCATGAGGCTGTCGG
AGCGGGAAGCGTTGCCATTGCGGAAATGATGGTTCGCGCAGGGGCTCAGG
TGTGCCCCGGTTTACCGAAGGGAATATATATTTATGAGTACACGACCCTC
TTTAGAGTATTTGGCTAATCTCCTCCATAAAACTATGTCGATGTTAGGTG
CGTACGATGCTAAACCATGCGGTGGTACCCAACGTTATCTATTTCTGGGG
GAGGTCGCGCTTTTCTCGAGACGAACAGCCTCTGCCTGAGCGTGGGGCGA
TAATGTACGGAGCGGTGTTTACCCAATTTCGTCGAACCGCAGGTCTGCCA
AAGCATCTCTCCATTTTTACCACGTATCATTTCTCCATTGACGCGATCGT
GCACACGCCCAAAGGTTGACGCAACAAGCGACTCGGCGGGAATGACGCCA
CTCCACTTAGCCCTTGCGAACGGCCAGTACGCGGCTGCCCGCCTCCTTGT
CCACGCTGGTGCTAACGTTTGCCTGCCGGACGCCCGGGGTATGACGCCGC
TTCGACTGACGGTCGAGATGGCCGACGCTGCTACCTTGGCCCTCCTGCTT
TCTGCCGAAAGGCGTGCGGATCTGAGCATCGAAGACGAGGTGCGATAACG
TCGCGCCATAATTGAGTCTAAAAAACAAAATGGCGGACGGTAACTGGTAC
TTGTGTTCTACACGTCTTGGCCGTGTCCCGGTTTGCCTCTACTCCGACGT
TCTATACTGAGAGCGAGCAAAACGTGTTGCGGTGTCGTGGTGGATTGGAA
GTCATACTGTCGATTGACTCTGACGGCTCGTGTGTGCTTAAACGAATTTC
ACCACCTGCACCTCTTCGAGTGGTAACTCGTGCCAACGCCTTTGGGCATG
TCGAACGGGAAAAATGCAGTAGTGTCTGCCTTCACCTTTCGATGCGCTCC
TTGTCCTTATCTTACCCACAGCACGATTTTATAATGTTGTGTATGAAATT
TCGCCAGCAGTATGCATGCCTGTGTGCACTGTCGGGCTCTCACGCATTCG
CTGTCTCAAATCCGTCTACATTTCAAGTCGTGCACTCGTCCTCTCTTCGC
GCTGCCTGCTGTGTTACAGAATCAAGGAACGGTTCTCCACGCCGCCTGCA
GGCTCGGCTTAACAGATATTGCGCAGCTTCTTCTTGAATCCGGTGCAAAC
CCACACGCGAGGGACGCACATGGACAAACGCCCGAGCTCGTGGCTCTTGA
CCTGGGACACGACGAGTGTGCAGGACTCTTCTGCCAGCTGGAAGTTGGTC
TTTTTGTACTACAGAGCGAGAAGAGCGAGAGCGTGCCGGCCACAAGCGCC
GGCGAAGAGTCGTCCGAAGCGATGCTACTCGGAGAGCGCCACGGTAGCGG
CGACACGGACGTGGGGAGGGAAGACGCGCCGGGCGTGGAGGTAGGGAAGC
GGGATGATGAAGTCAACAACGCCAGAGAAGAAGGTGGCCTAGTGGTCGAG
CCGGAACGCTCAGGCGGTGAGGAAGAGCAGCAATATGGGAGGCTGGAACC
GGAGGACGGGGCGGAATGGACACTGGACACCTACCGAGAACATGGAGAAG
AGAAAATCGCAAAAGAACACTTTCCCGAGGCTGTTGATGGGGCACCTCTG
CTATCTTCCGGCGTCCTCCCAGCCGACCACCAACAAGTGTTGACGATGTC
TTCGGTGGGTGGGGGAGATGAAACCGAATGGAATCCGAACCAGCTTATTG
ACGGACCCGACACCCACTCAAGAGGGAGCGTGGACCAGACAGAGACGCAG
GAAGTAGAGCAGCCGACAGCAGAGTCGAGGGAGCACACTGAAGCGGAGTA
TGTAGAAGAAGGTACCGTGGTCCAGGGTGGGGAGGGCGACGAGTGGGAAT
GGTCGTCAATCGAGGGGTGGAGGCGACACTTCGGTCTAGGTGAGACTTCG
CAAGCTGTTGTAGTCTTCGAGGGAGGGGGGGCGCCACCCCCTGCAGAGCC
CGCGACTGCAGAAAATGGCGTAGACCACGACTTGCGTCAGAGCGAATCAT
GCTCGGAGATGCAATTGTATAGCAACGAAAACGGCGTTGGTGGGAGCCTG
AACGATGAAAGTACGCATGGATGGGTTCAGACACCGGGCGGGAAATGGGA
AGCAGAACCGATTGTCGAAGAAGGAGGAAGAAGTTGCGACGACGACCTGG
GAGGAACGGATCCCGAAAATCCAGCCGATACACGCAACGGCATTCTCACG
TACACCCCGGAAAGCTACAAGCACGAGCAGGGTAGGGAGAGCGGCGGAGT
CGATCGCTGGGGTGCGGCTGCGCACGCCGAAGGTGAGCAGGAGCAGACAA
AATCCGGACAAGTGCCAGACGGCAAAAGCGAGAGCCTACCCTTGAATGCT
GAGTATCCTAGCCTCGAAAGCGGCGGTAACGGGTTGCAAGAAGGAGGATA
CCAAGATGTTGAAGCATCGTTTGGCTCATACGAGAGGTCCCCGTTATCTG
AAGGACGCCCCGACGTCTCGGTCAAAGAAGAAAACGCACAGGAAATACCA
CGCTCAGGTCGTGCGGAAGAGCAGCAGTACGGGGGGTACGAACAGCAGGA
CGGTGTGGAGTGGACACCAGACGCCGACCGAGAAAACGGAGAAAACCAAA
GCGTACAAGAAGATTTCCCCGTGGTTGTTGGGGCAGCCCGACTATCTTCC
GGCGCAAGTGATCCTTCGCGAGCCATTGTAGTCTTCGAGGGAGGGGGGGC
ACCACCCCCTGCAGAGCCCGCGACTGCAGAAAATAGCGTAGACCATGACC
TGCGTCAGAGCGAATCATACTCGGAGATGAAATTGCATAGCGACGAAAAC
GGCGTCGGTGGGAGCCTGAACGATGAAAACACGCACGGTTGGATTCAGAC
GCCGGACGGGAAATGGGGAGCAGAACCGATGGCCGAAGAGGGAGGAGGAA
GTTACGACGACGACCTGGGAGGAACGGATCCCGAAAATCCAGCCGATACA
CGCAACGGCATTCTCACGTACACCCCGGAAAGCTACAAGCACGAGCAGGG
TGGGGAGAGCGGCGAAGTCGATCGCTGGGGTGCAGCTGCGCACGCCGAAG
GTGTGCAGGAGCAGACAAAATCCGGACAAGTGCCAGACGGCAAAAGCGAG
AGCCTACCCTTGAATGCTGAGTATCCTAGCCTCGAAAGCGGCGGTAACGG
GTTGCAAGAAGGAGGATACCAAGATGTTGAAGCATCGTTTGGCTCATACG
AGAGGTCCCCGTTATCGAAAGGACGCCCCGACGTCTCGGCCAAAGAAGAA
AACGCACAGGAAATACCACGCTCAGGTCGTGTGGAAGAGCAGCAGTACGG
GGGGTACGAACAGCAGGACGGTGTGGAGTGGACACCGGACGCCGACCGAG
AAAACGGAGAAGACCAAAGCGTACAAGAAGATTTCCCCGTGGTTGTTGGG
GCAGCCCGACTATCTTCCGGCGCAAGTGATCCTTCGCGAGCCATTGTGGT
CTTCGAGGGAGGGAGGGCACCACTCCCAGCAGAGCCCGCGACTGCAGAAA
ATAGCTTAGACCATGACCTGCGTCAGAGCGAATCATACTCGGAGATGCAA
TTGCATAGCGACGAAAACGGCGTCGGTGGGAGCCTGAACGATGAAAGTAC
GCACGGTTGGATTCAGACACCGGACGGGAAATGGGGAGCAGAACCGATTG
TCGAAGAAGGAGGAAGAAGTTACGACGACGACCTGGGAGGAACGGATCCC
GAAAATCCAGCCGATACACGCAACGGCATTCTCACGTACACCCCGGAAAG
CTACAACCACGAGCAGGGTGGGGAGAGCGGCGGAGTCGATCGCTGGGGTG
CGGCTGCGCACGCCGAAGGTGAGCAGGAGCAGACAAAATCCGGACAAGTG
CCAGACGGCAGAAGCGAGAGCCTACCCTTGAATGCTGAGTATCCTAGCCT
CAAAAGCGGCGGTAACGGGTTGCAAGAAGGAGGATACCAAGATGTTGAAG
CATCGTTTGGCTCATACGAAAGGTCCCCGTTATCGGAAGGACGCCCCGAC
GTCTCGGTCAAAGAAGAAAACGCACAGGAAATACCACGCTCAGGTCGCAC
GGAAGAGCAGCAGTACGGGGGGTACGAACAGCAGGACGGTGCGGAGTGGA
CACCGGACACCGATCGAGAAAACGGAGAAGACCAAAGCGTACAAAACGAT
TTCCCCGAGGCTTTTGATAGGGCGCCTCGGCTATCTTCCGGCGTCCTCCC
AACCAACCACCAACAAGTGTTGACGATGTCTTCTGCGGGGGGGGGAGATG
AAACCGAAAGGAATCCGCACCAGCCCATTGGCGGATCCGACGTTCACTTG
AGAGAGAGCGTGGACCAGACAGCGACGATAGAAGTAGAGCAGCCGACAGC
AGAGTCGAGGGAGCACGCGGAAGCCGAGCATGTGGAAGAAGGGGCCGCGA
TCCAAGATGAGAAGGGCGGCGAGTGGGAATGGTCGTCAACCGAGGGGTGG
AAGGGACACCCCGGTGTAAGTGAGCCTTCGCAAGCCATTGTGGTAATTGA
GGGACGGGAGCCGCCACCCCCTGCCGAGCCCGCGACTGCAGAGAATGGCG
TAGACCACGACCTGCGTGATAGCGAATCATGCTCGGAGATGCAACTGTAT
AGCAACGAAAACGACGTCGGTGAGAGCCTGATCGATGAAAGCACGCACGG
ATGGGTTCAGACACCGGACAGGAAATGGGAAGCAGAACCGACAGCCGAAG
AAGGAGGAGGGATTTGCGACGACGACCCGGGAGGAAGGGGTCCCGAAAAT
CCAGCCGATGCAGGCAGCGGGATTGTCACGTACACTCCGGAAAGCTACGA
GCACGAGCAGGGTGGGGAGAGCGGCGGAGTCGATCGCCGAGGTGTGGCTG
CGCACGCCGAAGGTGAACAGGAGCAGACAGAATCCGGCCAAGTGCCAGAC
GGCAAAAGCGAAAGCCCACCCTTGAATGCTGAGTCTCCTAGCCTCGAAAG
CGGCGGTAGCGCTATGCAAGCAGGGGGGTACCAAGCTGTCGAAGCATCCT
TTGGCTCGTACGATAGGTCCTCGTTATCGGAAGGACGACCCGACGTCTCC
CTCAAAGAAGGAAACGCACAGGAAACCCCTGCCGAAGTGTGGCGGGGAGG
ACGCGGGAACGACGATGCACATCAATCGGAGCACGACGAATACAACGACA
ACAAGGGCAGTGAAGAGGGAGAGCAAAGCACGGCGCTAGATGCGGAGCCG
GTGCTCCACAATGGGTTGGATGGGGACGAGGAGATGAGCAGGAGGGGTAC
GATGGGATGGAGCGGCATCGCGGCTACCTTGCGAGCAAAACATTCCTGGA
TGTCCATCGTGGACAGGGAGTCAGGCAGTGTGTACTATCAGAATCAGAGG
TCTGGAGCGACACAGTGGGAGCCGCCGGCTGAAGATGGGGCTGTCGTTGT
GCCCGAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig995:118..6924+

>mRNA_S-dermatodea_contig995.17874.1 ID=mRNA_S-dermatodea_contig995.17874.1|Name=mRNA_S-dermatodea_contig995.17874.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=5346bp|location=Sequence derived from alignment at S-dermatodea_contig995:118..6924+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATGCACAGGGCCAGCTCCTTCGATCGACGCTGTCATTCGGTTCTTC
ACCCGCGAACACGACCACACCTCTAGACCTCGCGACCGCCAAAATGGCCA
CCGGAGTCGTCGACGCGTTTAAAGCGCAACCTGGTAGCACCACTGGCGCG
TTCCGCAGACGCAAGGCGGACGCCCCAAAACCTGCCGTTGCCGCCGATTG
CATTCAGCATGCTTGGAGAGCGTCACGCGAGCAACAAGTGGTCGCGAGAG
TTACCGGCAGTGTTTCAGTTATACAGAAATCCTGGAGGATGCACTCCAGA
AGGCGCCGTGCAGGATCTCAAGCGGTACGGGCTTGGCGCCGACGAGCCCG
CGTCCGGGCACGAACGCTCGACCAGGCGCTCATCGAGGCGGCAGGTGAAG
GAGATTTGCGTGCCGTTGCTTTCCTGCTGCGTCCCGCGGTGGGGTGGAAA
GCAGGGGCCGACGCAAACGCGACGGACGTCGACAGAGCGACCGCCCTGCA
TGCAGCTTGTCGAGGGCGGCAGACGGAGATAAAAACAAAAGGCACAACCG
ACCAAACTCCATCCGTCTCCGGACTGGGAGCGATTGGAGACGACTCACCG
GCGAACGCGGGTGGCGGTGGCGGAGAAAGAACTCACGCCGACTGGGTCGG
AGTTATACGGGCTTTGGTGGAAGCGGGGGCGTCCGTGGAAGCCAAGGATG
TGTGGGGGTTCACGCCAATACTAACAGCCGCTGGGACGGCGGGCGGACAG
ATCGTTGCTGCTCTAGCAGACCTCGGCGCGGAGGTCGACATATCGGAAGA
CAGAAGCATGAAAAGGACGCCGCTTGTCATCGCAACGCAGAGAGCTATGC
ATGCACAGGGCCAGCTCCTTCGATCGACGCTGTCATTCGGTTCTTCACCC
GCGAACACGACCACACCTCTAGACCTCGCGACCGCCAAAATGGCCACCGG
AGTCGTCGACGCGTTTAAAGCGCAACCTGGTAGCACCACTGGCGCGTTCC
GCAGACGCAAGGCGGACGCCCCAAAACCTGCCGTTGCCGCCGATTGCATT
CAGCATGCTTGGAGAGCGTCACGCGAGCAACAAGTGGTCGCGAGAGTTAC
CGGCAGTGTTTCAGTTATACAGAAATCCTGGAGGATGCACTCCAGAAGGC
GCCGTGCAGGATCTCAAGCGGTACGGGCTTGGCGCCGACGAGCCCGCGTC
CGGGCACGAACGCTCGACCAGGCGCTCATCGAGGCGGCAGGTGAAGGAGA
TTTGCGTGCCGTTGCTTTCCTGCTGCGTCCCGCGGTGGGGTGGAAAGCAG
GGGCCGACGCAAACGCGACGGACGTCGACAGAGCGACCGCCCTGCATGCA
GCTTGTCGAGGGCGGCAGACGGAGATAAAAACAAAAGGCACAACCGACCA
AACTCCATCCGTCTCCGGACTGGGAGCGATTGGAGACGACTCACCGGCGA
ACGCGGGTGGCGGTGGCGGAGAAAGAACTCACGCCGACTGGGTCGGAGTT
ATACGGGCTTTGGTGGAAGCGGGGGCGTCCGTGGAAGCCAAGGATGTGTG
GGGGTTCACGCCAATACTAACAGCCGCTGGGACGGCGGGCGGACAGATCG
TTGCTGCTCTAGCAGACCTCGGCGCGGAGGTCGACATATCGGAAGACAGA
AGCATGAAAAGGACGCCGCTTGTCATCGCAACGCAGAGAGCTAACGTTTC
GGCGGCGGCCGCTCTATTGGAGTACGGAGCCAGGGTGAACCTCCCTGCCG
GGGACGGATTGACGCCACTTCATGAGGCTGTCGGAGCGGGAAGCGTTGCC
ATTGCGGAAATGATGGTTCGCGCAGGGGCTCAGAACGTTTCGGCGGCGGC
CGCTCTATTGGAGTACGGAGCCAGGGTGAACCTCCCTGCCGGGGACGGAT
TGACGCCACTTCATGAGGCTGTCGGAGCGGGAAGCGTTGCCATTGCGGAA
ATGATGGTTCGCGCAGGGGCTCAGGTTGACGCAACAAGCGACTCGGCGGG
AATGACGCCACTCCACTTAGCCCTTGCGAACGGCCAGTACGCGGCTGCCC
GCCTCCTTGTCCACGCTGGTGCTAACGTTTGCCTGCCGGACGCCCGGGGT
ATGACGCCGCTTCGACTGACGGTCGAGATGGCCGACGCTGCTACCTTGGC
CCTCCTGCTTTCTGCCGAAAGGCGTGCGGATCTGAGCATCGAAGACGAGG
TTGACGCAACAAGCGACTCGGCGGGAATGACGCCACTCCACTTAGCCCTT
GCGAACGGCCAGTACGCGGCTGCCCGCCTCCTTGTCCACGCTGGTGCTAA
CGTTTGCCTGCCGGACGCCCGGGGTATGACGCCGCTTCGACTGACGGTCG
AGATGGCCGACGCTGCTACCTTGGCCCTCCTGCTTTCTGCCGAAAGGCGT
GCGGATCTGAGCATCGAAGACGAGAATCAAGGAACGGTTCTCCACGCCGC
CTGCAGGCTCGGCTTAACAGATATTGCGCAGCTTCTTCTTGAATCCGGTG
CAAACCCACACGCGAGGGACGCACATGGACAAACGCCCGAGCTCGTGGCT
CTTGACCTGGGACACGACGAGTGTGCAGGACTCTTCTGCCAGCTGGAAGT
TGGTCTTTTTGTACTACAGAGCGAGAAGAGCGAGAGCGTGCCGGCCACAA
GCGCCGGCGAAGAGTCGTCCGAAGCGATGCTACTCGGAGAGCGCCACGGT
AGCGGCGACACGGACGTGGGGAGGGAAGACGCGCCGGGCGTGGAGGTAGG
GAAGCGGGATGATGAAGTCAACAACGCCAGAGAAGAAGGTGGCCTAGTGG
TCGAGCCGGAACGCTCAGGCGGTGAGGAAGAGCAGCAATATGGGAGGCTG
GAACCGGAGGACGGGGCGGAATGGACACTGGACACCTACCGAGAACATGG
AGAAGAGAAAATCGCAAAAGAACACTTTCCCGAGGCTGTTGATGGGGCAC
CTCTGCTATCTTCCGGCGTCCTCCCAGCCGACCACCAACAAGTGTTGACG
ATGTCTTCGGTGGGTGGGGGAGATGAAACCGAATGGAATCCGAACCAGCT
TATTGACGGACCCGACACCCACTCAAGAGGGAGCGTGGACCAGACAGAGA
CGCAGGAAAATCAAGGAACGGTTCTCCACGCCGCCTGCAGGCTCGGCTTA
ACAGATATTGCGCAGCTTCTTCTTGAATCCGGTGCAAACCCACACGCGAG
GGACGCACATGGACAAACGCCCGAGCTCGTGGCTCTTGACCTGGGACACG
ACGAGTGTGCAGGACTCTTCTGCCAGCTGGAAGTTGGTCTTTTTGTACTA
CAGAGCGAGAAGAGCGAGAGCGTGCCGGCCACAAGCGCCGGCGAAGAGTC
GTCCGAAGCGATGCTACTCGGAGAGCGCCACGGTAGCGGCGACACGGACG
TGGGGAGGGAAGACGCGCCGGGCGTGGAGGTAGGGAAGCGGGATGATGAA
GTCAACAACGCCAGAGAAGAAGGTGGCCTAGTGGTCGAGCCGGAACGCTC
AGGCGGTGAGGAAGAGCAGCAATATGGGAGGCTGGAACCGGAGGACGGGG
CGGAATGGACACTGGACACCTACCGAGAACATGGAGAAGAGAAAATCGCA
AAAGAACACTTTCCCGAGGCTGTTGATGGGGCACCTCTGCTATCTTCCGG
CGTCCTCCCAGCCGACCACCAACAAGTGTTGACGATGTCTTCGGTGGGTG
GGGGAGATGAAACCGAATGGAATCCGAACCAGCTTATTGACGGACCCGAC
ACCCACTCAAGAGGGAGCGTGGACCAGACAGAGACGCAGGAAGGCGGCGA
GTGGGAATGGTCGTCAACCGAGGGGTGGAAGGGACACCCCGGTGTAAGTG
AGCCTTCGCAAGCCATTGTGGTAATTGAGGGACGGGAGCCGCCACCCCCT
GCCGAGCCCGCGACTGCAGAGAATGGCGTAGACCACGACCTGCGTGATAG
CGAATCATGCTCGGAGATGCAACTGTATAGCAACGAAAACGACGTCGGTG
AGAGCCTGATCGATGAAAGCACGCACGGATGGGTTCAGACACCGGACAGG
AAATGGGAAGCAGAACCGACAGCCGAAGAAGGAGGAGGGATTTGCGACGA
CGACCCGGGAGGAAGGGGTCCCGAAAATCCAGCCGATGCAGGCAGCGGGA
TTGTCACGTACACTCCGGAAAGCTACGAGCACGAGCAGGGTGGGGAGAGC
GGCGGAGTCGATCGCCGAGGGCGGCGAGTGGGAATGGTCGTCAACCGAGG
GGTGGAAGGGACACCCCGGTGTAAGTGAGCCTTCGCAAGCCATTGTGGTA
ATTGAGGGACGGGAGCCGCCACCCCCTGCCGAGCCCGCGACTGCAGAGAA
TGGCGTAGACCACGACCTGCGTGATAGCGAATCATGCTCGGAGATGCAAC
TGTATAGCAACGAAAACGACGTCGGTGAGAGCCTGATCGATGAAAGCACG
CACGGATGGGTTCAGACACCGGACAGGAAATGGGAAGCAGAACCGACAGC
CGAAGAAGGAGGAGGGATTTGCGACGACGACCCGGGAGGAAGGGGTCCCG
AAAATCCAGCCGATGCAGGCAGCGGGATTGTCACGTACACTCCGGAAAGC
TACGAGCACGAGCAGGGTGGGGAGAGCGGCGGAGTCGATCGCCGAGAAGG
AAACGCACAGGAAACCCCTGCCGAAGTGTGGCGGGGAGGACGCGGGAACG
ACGATGCACATCAATCGGAGCACGACGAATACAACGACAACAAGGGCAGT
GAAGAGGGAGAGCAAAGCACGGCGCTAGATGCGGAGCCGGTGCTCCACAA
TGGGTTGGATGGGGACGAGGAGATGAGCAGGAGGGGTACGATGGGATGGA
GCGGCATCGCGGCTACCTTGCGAGCAAAACATTCCTGGATGTCCATCGTG
GACAGGGAGTCAGGCAGTGTGTACTATCAGAATCAGAGGTCTGGAGCGAC
ACAGTGGGAGCCGCCGGCTGAAGATGGGGCTGTCGTTGTGCCCGAAAAGG
AAACGCACAGGAAACCCCTGCCGAAGTGTGGCGGGGAGGACGCGGGAACG
ACGATGCACATCAATCGGAGCACGACGAATACAACGACAACAAGGGCAGT
GAAGAGGGAGAGCAAAGCACGGCGCTAGATGCGGAGCCGGTGCTCCACAA
TGGGTTGGATGGGGACGAGGAGATGAGCAGGAGGGGTACGATGGGATGGA
GCGGCATCGCGGCTACCTTGCGAGCAAAACATTCCTGGATGTCCATCGTG
GACAGGGAGTCAGGCAGTGTGTACTATCAGAATCAGAGGTCTGGAGCGAC
ACAGTGGGAGCCGCCGGCTGAAGATGGGGCTGTCGTTGTGCCCGAA
back to top