mRNA_S-dermatodea_contig9940.17870.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9940.17870.1
Unique NamemRNA_S-dermatodea_contig9940.17870.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.930e-17
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   58 PTNEVSETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKK 249
            PT +VS T WYQDVK WVG AS AC  + GV A KEDDD RLWGVFLG+  LL+G +  ++A++
Sbjct: 1089 PTGQVSGTPWYQDVKTWVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGGEFFLIARE 1152
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BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.900e-15
Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:    4 WPGSNFESPADPASIQTDPTNEV--------------------SETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAK--KLFFFVVHTERGGGGED 297
            WPGSN E  + PA +   P+                       S T WYQDVK +VG AS  C  + GV  ++EDDD RLWGVFLGL  LL+G++  ++A+  KL  F    E    G +
Sbjct:  966 WPGSNSEV-SGPAPVHISPSXXXXXXXXXXXXXXXXXXXXXXGSRTPWYQDVKTFVGAASLVCLAVFGVFHDEEDDDPRLWGVFLGLGMLLVGVEFGLIAREYKLLCFTPRAEAASAGNE 1084
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BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: A0A6H5KNW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   70 VSETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKK 249
            VS T WYQDVK +VG AS AC  + GV A KED+D RLWGVFLG+   LLG++ L++A++
Sbjct:  416 VSGTPWYQDVKTFVGAASVACLTVFGVFASKEDEDPRLWGVFLGVGMTLLGVEFLLIARE 475
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BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.480e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   67 EVSETRWYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKK 249
            +VS T WYQDVK  VG AS AC  + GV A KEDDD RLWGVFLG+  LL+G + +++A++
Sbjct: 1185 QVSGTPWYQDVKTLVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGAEFVLIARE 1245
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BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.380e-12
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:   25 SPADPASIQTDPTNEVSETRWYQD-VKAWV-------GIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIVAK 246
            SP  PAS+QT+P+++ S T  YQD ++AWV       G A A C  + GV   KEDDD RLWG+FLG+  +L  ++ ++VAK
Sbjct:  728 SPISPASLQTNPSSQDSRTPRYQDRMRAWVKDLRVQVGAAGALCVTVFGVFYAKEDDDPRLWGLFLGIGLVLAVVEFVLVAK 809
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BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Match: A0A6H5KED3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.170e-8
Identity = 34/89 (38.20%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:    1 PWPGSNFESPADPASIQTDPTNEVSETR--WYQDVKAWVGIASAACFILCGVNAEKEDDDARLWGVFLGLAFLLLGLQLLIV----AKK 249
            PW  SN+++               SETR  WY+DVKAW+ +AS AC  +      K+DDD RLWG FL +  LL+ +  +++    AKK
Sbjct:  314 PWLSSNYQN---------------SETRYVWYEDVKAWILLASEACLTVFTAFVAKDDDDPRLWGSFLAVGMLLILIDAVLIGVLIAKK 387
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9940.17870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FX56_ECTSI2.930e-1759.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FJV1_ECTSI7.900e-1538.33LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KNW8_9PHAE1.360e-1458.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX69_ECTSI1.480e-1457.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JRW5_9PHAE5.380e-1246.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KED3_9PHAE4.170e-838.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9940contigS-dermatodea_contig9940:287..1450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7FX56
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size307
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9940.17870.1prot_S-dermatodea_contig9940.17870.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9940 287..1450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.9826634-CDS-S-dermatodea_contig9940:286..3101622925438.9826634-CDS-S-dermatodea_contig9940:286..310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 287..310 +
1694079934.186166-CDS-S-dermatodea_contig9940:286..3101694079934.186166-CDS-S-dermatodea_contig9940:286..310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 287..310 +
1622925439.000587-CDS-S-dermatodea_contig9940:510..5551622925439.000587-CDS-S-dermatodea_contig9940:510..555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 511..555 +
1694079934.2039783-CDS-S-dermatodea_contig9940:510..5551694079934.2039783-CDS-S-dermatodea_contig9940:510..555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 511..555 +
1622925439.011729-CDS-S-dermatodea_contig9940:1213..14501622925439.011729-CDS-S-dermatodea_contig9940:1213..1450Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 1214..1450 +
1694079934.2147136-CDS-S-dermatodea_contig9940:1213..14501694079934.2147136-CDS-S-dermatodea_contig9940:1213..1450Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9940 1214..1450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9940.17870.1

>prot_S-dermatodea_contig9940.17870.1 ID=prot_S-dermatodea_contig9940.17870.1|Name=mRNA_S-dermatodea_contig9940.17870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
PWPGSNFESPADPASIQTDPTNEVSETRWYQDVKAWVGIASAACFILCGV
NAEKEDDDARLWGVFLGLAFLLLGLQLLIVAKKLFFFVVHTERGGGGEDW
E*
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mRNA from alignment at S-dermatodea_contig9940:287..1450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9940.17870.1 ID=mRNA_S-dermatodea_contig9940.17870.1|Name=mRNA_S-dermatodea_contig9940.17870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig9940:287..1450+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATGGCCGGGAAGCAACTTCGAGGTGAGGGCTCTTTTGCCGACATGCAA
TTGCTACCATGTACAAGCCATGTCCGGTGCAAAAATGCCGTAGTCCCATG
AGCAACAACCTTCGTCCAGATTATGAAACGGTCCAACCTGTATGCTTTCA
AATGTAGGAGTGCTCACGCCTGCGCCAATCGTCTTAAGCCCTTCTCGCTT
CCAAATTGTTTTTCCCTTACACAGAGCCCTGCTGATCCGGCCTCTATCCA
GACGGATCCGACAAACGAGGTATGATCAACGTCATCACAAGCAATTTTGA
AGTAGCGAGCTGCTTATGGCCTAGAACTGCGCGACAAAATGGCCGAAATC
GTATTAATTTCAAGGTCACTCCATCCAACCCGCGTTGATACGTGTTGTCT
CTCGGGCCCCTCTCCCAACATATGTGCCGCCCTTCTATATCTCAAGCCGG
TTGATTTCCCTGTCTAAAACAGTGCGGAAGGTGGTGACAATCAGTCTCCG
GTATACACGTCCTACTGTATGTAGCCGCAACAACAGTTGAAGGATGTTGC
CCTGAAGGTCGCGAGTTTGTTTATGTCAGATGATGCGTTAATGGGTAGCC
CTCTGCTTGATCCTTGAAGAGCATAGCGAAACGACAACGAAGCCGAGAAT
ACGTGAGGGTAGGCCTCCAGCTATCACACATAATGCCCTTAACGTACTCC
ATCTCCAGGCCAGCCGGCAGTGATGCGCGACACGGCATGCTTGCCTCACT
GGGCATTATTTGATTCAGGTTAAATTCGTCACCGTAACTACTCTGATGCC
GGGAATTTTCCCTGACGCCCAAACGTTTACGGGTCTCTACGACATGAGGT
GCCTGCTACTTGGTTGCGGTCATGCCTCGTGTTTGCCTTACCGAGCAGTC
ACGAATTGCCAATCTTTTACCATGCAGGTTTCGGAGACGCGATGGTACCA
GGATGTGAAGGCGTGGGTAGGCATAGCCAGTGCGGCCTGTTTCATTCTCT
GTGGGGTGAACGCTGAAAAGGAAGATGACGACGCTCGTCTATGGGGGGTG
TTTTTGGGCCTTGCCTTTTTGCTCTTGGGGTTACAGTTGTTGATAGTTGC
CAAAAAGTTATTTTTTTTTGTGGTTCACACAGAACGGGGTGGAGGGGGCG
AGGACTGGGAATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9940:287..1450+

>mRNA_S-dermatodea_contig9940.17870.1 ID=mRNA_S-dermatodea_contig9940.17870.1|Name=mRNA_S-dermatodea_contig9940.17870.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig9940:287..1450+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATGGCCGGGAAGCAACTTCGAGCCATGGCCGGGAAGCAACTTCGAGAG
CCCTGCTGATCCGGCCTCTATCCAGACGGATCCGACAAACGAGAGCCCTG
CTGATCCGGCCTCTATCCAGACGGATCCGACAAACGAGGTTTCGGAGACG
CGATGGTACCAGGATGTGAAGGCGTGGGTAGGCATAGCCAGTGCGGCCTG
TTTCATTCTCTGTGGGGTGAACGCTGAAAAGGAAGATGACGACGCTCGTC
TATGGGGGGTGTTTTTGGGCCTTGCCTTTTTGCTCTTGGGGTTACAGTTG
TTGATAGTTGCCAAAAAGTTATTTTTTTTTGTGGTTCACACAGAACGGGG
TGGAGGGGGCGAGGACTGGGAATGAGTTTCGGAGACGCGATGGTACCAGG
ATGTGAAGGCGTGGGTAGGCATAGCCAGTGCGGCCTGTTTCATTCTCTGT
GGGGTGAACGCTGAAAAGGAAGATGACGACGCTCGTCTATGGGGGGTGTT
TTTGGGCCTTGCCTTTTTGCTCTTGGGGTTACAGTTGTTGATAGTTGCCA
AAAAGTTATTTTTTTTTGTGGTTCACACAGAACGGGGTGGAGGGGGCGAG
GACTGGGAATGA
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