mRNA_S-dermatodea_contig994.17868.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig994.17868.1
Unique NamemRNA_S-dermatodea_contig994.17868.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig994.17868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig994contigS-dermatodea_contig994:16610..18195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size337
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig994.17868.1prot_S-dermatodea_contig994.17868.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig994 16611..18195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.5566819-CDS-S-dermatodea_contig994:16610..166641622925438.5566819-CDS-S-dermatodea_contig994:16610..16664Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 16611..16664 -
1694079933.8524826-CDS-S-dermatodea_contig994:16610..166641694079933.8524826-CDS-S-dermatodea_contig994:16610..16664Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 16611..16664 -
1622925438.568484-CDS-S-dermatodea_contig994:17464..176941622925438.568484-CDS-S-dermatodea_contig994:17464..17694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 17465..17694 -
1694079933.862493-CDS-S-dermatodea_contig994:17464..176941694079933.862493-CDS-S-dermatodea_contig994:17464..17694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 17465..17694 -
1622925438.5777943-CDS-S-dermatodea_contig994:18143..181951622925438.5777943-CDS-S-dermatodea_contig994:18143..18195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 18144..18195 -
1694079933.8735766-CDS-S-dermatodea_contig994:18143..181951694079933.8735766-CDS-S-dermatodea_contig994:18143..18195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 18144..18195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig994.17868.1

>prot_S-dermatodea_contig994.17868.1 ID=prot_S-dermatodea_contig994.17868.1|Name=mRNA_S-dermatodea_contig994.17868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
RDTREVPWRKGSGGRDTGNRTKGEHSGSSNHDDDDDDHDDDDDDDNDDND
SEGRKEDEEEEEEWETGSESEEDAEEKPLLASQGGGEHATGNVQQTRGGQ
PDDTDEVVNTIK
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mRNA from alignment at S-dermatodea_contig994:16610..18195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig994.17868.1 ID=mRNA_S-dermatodea_contig994.17868.1|Name=mRNA_S-dermatodea_contig994.17868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1586bp|location=Sequence derived from alignment at S-dermatodea_contig994:16610..18195- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGATACGCGAGAGGTCCCGTGGAGAAAAGGAAGTGGAGGGCGCGACAC
GGGTGAGATCGAGCACACGAGTTTTACATATCAGCCTTGACCACTAGTAC
TTTTGTCGTAAATCATAGCACATTTTTGTAGTTTGGCGATGGTGGGAGTC
GGTTTCCCGCATTCAACGAAACGTGTGGCCCGACCTTCAGGTTAAACAAA
GAACTTAGTTGCACGCAGTAGGCCGTGTGATCAACGCATCGCCTTCGTTC
GCTGATTGACCAATCCACCGACTAGCGATGTGATTTTGTGCGCGCTATGG
CGGCTGATACAAAGTATAACCTCTTTAGATTGATGAGCCGATTGGTGGAT
CGGTTGATCGTCAACCTGGTCAAACCGGCTGCCTGTAATGTTGGATCGGA
TCAACTGGCAAAGCATCAGAGGCGTCCCTAAATAAGCGTAAGCGCCCCAT
AGTGCGCCCCAAGGCAACATCACTCTCGCCCTTGCCCTGCCGACCAATCA
GGAAATCGTACCAAAGGCGAACATTCCGGCTCCTCCAATCATGACGACGA
CGATGACGACCATGACGATGACGACGATGACGACAACGATGACAACGATA
GCGAGGGCAGGAAAGAGGATGAGGAGGAGGAGGAGGAGTGGGAAACCGGA
TCAGAATCCGAGGAAGACGCCGAGGAAAAACCGTTGCTTGCTTCGCAGGG
AGGGGGGGAGCATGCAACCGGCAATGTGCAGGTCGGACGAATTTCGGTTT
TGTCACGATAGCCCACCTACACGCATAGACAAGGACGCCTCCACCCTAGC
AGCGAGCGGCTCTGGGATCGCTTGAGGGCATGCACGTGCTATTACGGAGG
TGTACAGTAATGCACGTGCTATTACGGAGGTGTACAGTAATGCACGTGCT
ATGACGGAGGTGTACAGTAATCAGGACCAAATCTCATGACCATGAATACC
CAACTATTCCGACCGTGAATACCCCAAAACAACAACAAAACTATAATGAA
AACAACAAAACACGAGATATGGCCATAATCAAGAACGTTGACCTTCAAAT
CTCGATAATCCCAGCCTATTTAGATATTTTTAGGTTGAGACTTGTGGCAA
ATTTGGACCTGTTAACTATGGTCCCCCGTAATAGTGTTAGTGGCAAGGGG
TCTCGGCTTCGGCCATTGCGGCGTTCTGCCCAGAAGGGTAGAACTGTTTA
GACTATGCAGGTCTACGAAACCGTATGCAATGAGCTCAAAGCATTTCCTC
CAGCGGCTATCAACTCTCGATGTTGCCGTCCTACGTGAGTTAGCGCGGTA
ACCACACGCTTCGGTTCTCGCAGCTGGTTGGTTCTCTGTATTGATATATA
TTGAGATGTCGGCAACCATTCTCGCAGTCTTCCAGCTCGTGCTACCCGTT
CCAAAATAGCATTTAGGTCAAGCAGAGGGAGAGGTAGTGTGCAGTCAGTC
GTACACGCGTTTTGCCTTGTTCCTGGTTGACTTGCTTCCGGTCGCTGCCT
TTTTTCTACCCTGTTGTCGCAACGTGCCCAGCAAACGCGCGGCGGCCAGC
CGGATGACACCGATGAGGTCGTCAACACCATCAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig994:16610..18195-

>mRNA_S-dermatodea_contig994.17868.1 ID=mRNA_S-dermatodea_contig994.17868.1|Name=mRNA_S-dermatodea_contig994.17868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig994:16610..18195- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGATACGCGAGAGGTCCCGTGGAGAAAAGGAAGTGGAGGGCGCGACAC
GGAGAGATACGCGAGAGGTCCCGTGGAGAAAAGGAAGTGGAGGGCGCGAC
ACGGGAAATCGTACCAAAGGCGAACATTCCGGCTCCTCCAATCATGACGA
CGACGATGACGACCATGACGATGACGACGATGACGACAACGATGACAACG
ATAGCGAGGGCAGGAAAGAGGATGAGGAGGAGGAGGAGGAGTGGGAAACC
GGATCAGAATCCGAGGAAGACGCCGAGGAAAAACCGTTGCTTGCTTCGCA
GGGAGGGGGGGAGCATGCAACCGGCAATGTGCAGGAAATCGTACCAAAGG
CGAACATTCCGGCTCCTCCAATCATGACGACGACGATGACGACCATGACG
ATGACGACGATGACGACAACGATGACAACGATAGCGAGGGCAGGAAAGAG
GATGAGGAGGAGGAGGAGGAGTGGGAAACCGGATCAGAATCCGAGGAAGA
CGCCGAGGAAAAACCGTTGCTTGCTTCGCAGGGAGGGGGGGAGCATGCAA
CCGGCAATGTGCAGCAAACGCGCGGCGGCCAGCCGGATGACACCGATGAG
GTCGTCAACACCATCAAGCAAACGCGCGGCGGCCAGCCGGATGACACCGA
TGAGGTCGTCAACACCATCAAG
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