mRNA_S-dermatodea_contig994.17865.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig994.17865.1
Unique NamemRNA_S-dermatodea_contig994.17865.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig994.17865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig994contigS-dermatodea_contig994:5491..6132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size603
Cds size603
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.5140421-CDS-S-dermatodea_contig994:5490..56681622925438.5140421-CDS-S-dermatodea_contig994:5490..5668Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 5491..5668 -
1694079933.8314567-CDS-S-dermatodea_contig994:5490..56681694079933.8314567-CDS-S-dermatodea_contig994:5490..5668Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 5491..5668 -
1622925438.525779-CDS-S-dermatodea_contig994:5707..61321622925438.525779-CDS-S-dermatodea_contig994:5707..6132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 5708..6132 -
1694079933.8418345-CDS-S-dermatodea_contig994:5707..61321694079933.8418345-CDS-S-dermatodea_contig994:5707..6132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig994 5708..6132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig994.17865.1prot_S-dermatodea_contig994.17865.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig994 5491..6132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig994.17865.1

>prot_S-dermatodea_contig994.17865.1 ID=prot_S-dermatodea_contig994.17865.1|Name=mRNA_S-dermatodea_contig994.17865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
MKSCITMSVAALAFAASDADAFFMPAGAIAGGASSTSLSSSAARSAKQAL
GTSRSHGSGCSCASCAPSAFHGTRCTCPCCSPSAVVSGRSHGSGCRCGSC
SVRMQAHGEGCGCGDCSPTVARAFHGTSCTCFACGSAAHGASRRAASSLT
VMMGAASDQVSELGEAATALRQRLADEPEAVVFGDTMAAVSESFDYTPKR
*
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mRNA from alignment at S-dermatodea_contig994:5491..6132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig994.17865.1 ID=mRNA_S-dermatodea_contig994.17865.1|Name=mRNA_S-dermatodea_contig994.17865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig994:5491..6132- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTCCTGCATCACGATGAGTGTAGCCGCTCTCGCCTTCGCGGCCAG
CGACGCCGATGCCTTCTTCATGCCCGCTGGAGCCATCGCGGGCGGAGCAT
CCTCGACCTCTCTCTCGTCCTCCGCCGCTCGCTCCGCCAAGCAAGCCCTC
GGCACGTCCCGCTCACACGGCTCTGGGTGCTCCTGTGCTTCGTGCGCGCC
GTCGGCCTTCCACGGCACCCGCTGTACGTGCCCCTGTTGCTCCCCCTCGG
CGGTCGTATCCGGGCGATCCCACGGCTCTGGGTGCCGCTGCGGTTCCTGC
TCGGTGCGCATGCAGGCTCACGGCGAGGGTTGCGGCTGTGGCGACTGCTC
ACCTACTGTCGCTCGCGCCTTCCACGGTACCTCATGCACGTGCTTCGCGT
GCGGCTCTGCGGCTCACGGCGCCTCGTGCAGCTGCGCCGCTTGCGCCGGC
ACCGGGGGTTGCAGGAGGCGGGCTGCTTCCTCGCTGACGGTGATGATGGG
AGCCGCTTCTGACCAGGTGTCGGAGCTCGGAGAGGCTGCGACGGCGCTCA
GGCAACGGCTTGCGGACGAGCCTGAGGCGGTGGTGTTCGGAGACACAATG
GCTGCGGTCTCGGAGAGCTTCGACTACACCCCCAAGCGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig994:5491..6132-

>mRNA_S-dermatodea_contig994.17865.1 ID=mRNA_S-dermatodea_contig994.17865.1|Name=mRNA_S-dermatodea_contig994.17865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig994:5491..6132- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGTCCTGCATCACGATGAGTGTAGCCGCTCTCGCCTTCGCGGCCAG
CGACGCCGATGCCTTCTTCATGCCCGCTGGAGCCATCGCGGGCGGAGCAT
CCTCGACCTCTCTCTCGTCCTCCGCCGCTCGCTCCGCCAAGCAAGCCCTC
GGCACGTCCCGCTCACACGGCTCTGGGTGCTCCTGTGCTTCGTGCGCGCC
GTCGGCCTTCCACGGCACCCGCTGTACGTGCCCCTGTTGCTCCCCCTCGG
CGGTCGTATCCGGGCGATCCCACGGCTCTGGGTGCCGCTGCGGTTCCTGC
TCGGTGCGCATGCAGGCTCACGGCGAGGGTTGCGGCTGTGGCGACTGCTC
ACCTACTGTCGCTCGCGCCTTCCACGGTACCTCATGCACGTGCTTCGCGT
GCGGCTCTGCGGCTCACGGCGCCTCATGAAGTCCTGCATCACGATGAGTG
TAGCCGCTCTCGCCTTCGCGGCCAGCGACGCCGATGCCTTCTTCATGCCC
GCTGGAGCCATCGCGGGCGGAGCATCCTCGACCTCTCTCTCGTCCTCCGC
CGCTCGCTCCGCCAAGCAAGCCCTCGGCACGTCCCGCTCACACGGCTCTG
GGTGCTCCTGTGCTTCGTGCGCGCCGTCGGCCTTCCACGGCACCCGCTGT
ACGTGCCCCTGTTGCTCCCCCTCGGCGGTCGTATCCGGGCGATCCCACGG
CTCTGGGTGCCGCTGCGGTTCCTGCTCGGTGCGCATGCAGGCTCACGGCG
AGGGTTGCGGCTGTGGCGACTGCTCACCTACTGTCGCTCGCGCCTTCCAC
GGTACCTCATGCACGTGCTTCGCGTGCGGCTCTGCGGCTCACGGCGCCTC
GAGGCGGGCTGCTTCCTCGCTGACGGTGATGATGGGAGCCGCTTCTGACC
AGGTGTCGGAGCTCGGAGAGGCTGCGACGGCGCTCAGGCAACGGCTTGCG
GACGAGCCTGAGGCGGTGGTGTTCGGAGACACAATGGCTGCGGTCTCGGA
GAGCTTCGACTACACCCCCAAGCGGTAAGAGGCGGGCTGCTTCCTCGCTG
ACGGTGATGATGGGAGCCGCTTCTGACCAGGTGTCGGAGCTCGGAGAGGC
TGCGACGGCGCTCAGGCAACGGCTTGCGGACGAGCCTGAGGCGGTGGTGT
TCGGAGACACAATGGCTGCGGTCTCGGAGAGCTTCGACTACACCCCCAAG
CGGTAA
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