mRNA_S-dermatodea_contig9926.17855.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9926.17855.1
Unique NamemRNA_S-dermatodea_contig9926.17855.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9926.17855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9926contigS-dermatodea_contig9926:4696..5696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1001
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.0736628-CDS-S-dermatodea_contig9926:4695..52471622925438.0736628-CDS-S-dermatodea_contig9926:4695..5247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9926 4696..5247 +
1694079933.6098032-CDS-S-dermatodea_contig9926:4695..52471694079933.6098032-CDS-S-dermatodea_contig9926:4695..5247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9926 4696..5247 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.0856397-UTR-S-dermatodea_contig9926:5247..56961622925438.0856397-UTR-S-dermatodea_contig9926:5247..5696Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9926 5248..5696 +
1694079933.6197836-UTR-S-dermatodea_contig9926:5247..56961694079933.6197836-UTR-S-dermatodea_contig9926:5247..5696Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9926 5248..5696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9926.17855.1prot_S-dermatodea_contig9926.17855.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9926 4696..5247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9926.17855.1

>prot_S-dermatodea_contig9926.17855.1 ID=prot_S-dermatodea_contig9926.17855.1|Name=mRNA_S-dermatodea_contig9926.17855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=184bp
PQGLSPGPSLYYSQRPAPGVNCEPPGGGLIFCFARLNLCTVSLESIADSC
EHACVETSLQVQYASPASLVPSLKRSAQKHQRVSVEQTTHTHAYSQDPQH
SNGYGKKKQKQASRQAGKQASRQAGNQASRQAGKQASNQRFRPHTHTNKK
NKKTIGARTKKNRTHKRVRSNNTANNTYDGKLL*
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mRNA from alignment at S-dermatodea_contig9926:4696..5696+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9926.17855.1 ID=mRNA_S-dermatodea_contig9926.17855.1|Name=mRNA_S-dermatodea_contig9926.17855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1001bp|location=Sequence derived from alignment at S-dermatodea_contig9926:4696..5696+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAAGGGTTATCGCCCGGGCCCTCCCTGTACTATAGTCAGCGCCCCGC
CCCTGGTGTGAACTGTGAACCACCAGGCGGGGGTTTAATATTCTGCTTCG
CACGTCTGAATTTGTGTACCGTATCGTTAGAGTCGATTGCGGACTCTTGC
GAGCACGCGTGTGTCGAAACGTCGCTACAAGTACAGTATGCGTCTCCCGC
TTCCCTCGTCCCTTCCCTCAAACGGTCGGCTCAAAAACACCAAAGAGTGT
CCGTAGAACAAACAACCCACACCCACGCATACTCTCAAGACCCACAGCAC
AGCAACGGATACGGCAAGAAAAAACAAAAGCAGGCAAGCAGGCAAGCAGG
CAAGCAGGCAAGCAGGCAAGCAGGCAACCAGGCAAGCAGGCAAGCAGGCA
AGCAAGCAAGCAACCAGCGGTTTCGCCCACACACACACACAAACAAAAAA
AACAAGAAAACCATCGGCGCTCGAACAAAAAAAAATCGCACACACAAAAG
AGTACGGAGTAACAACACCGCAAACAACACATACGACGGAAAATTGTTGT
AGTGCCTTGTACTAATACTATTATAGTGTACTATTATATTGCAACTCTTT
TCCTTGCTTTCTTGCCCCAACACGGCGGCGCACGGCACACGGCGCCTCTC
ACGATCCCCTTTTCGTTTACGCGCAGTGCTAAAACACTCTCGCGGGCTAT
TATGATATGCTTACCACTAGCTCTAAATGTAGCGCTGGCGTTTCTACGTG
CCAATTCATTGCACTTTTTAGTGTGGAGAGCACGTTCCTTAAACCCTTAT
CTCTCCCCATTCCACACATCCATCCTGGGGGTTTCCACAAAAGACGGAAG
GAGCATCAACGACCGACAGGGCCATGATCAACACGAAGAACGGGGCATTA
AGGCTTGGTCCACCTACGGACCACAAGACCAACCAAAATTGATTGATAGT
GGGACCCCCGTGTACCCCCGTGTACACATTAGCGCTCAAACAAAAACGCA
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig9926:4696..5696+

>mRNA_S-dermatodea_contig9926.17855.1 ID=mRNA_S-dermatodea_contig9926.17855.1|Name=mRNA_S-dermatodea_contig9926.17855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at S-dermatodea_contig9926:4696..5696+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAAGGGTTATCGCCCGGGCCCTCCCTGTACTATAGTCAGCGCCCCGC
CCCTGGTGTGAACTGTGAACCACCAGGCGGGGGTTTAATATTCTGCTTCG
CACGTCTGAATTTGTGTACCGTATCGTTAGAGTCGATTGCGGACTCTTGC
GAGCACGCGTGTGTCGAAACGTCGCTACAAGTACAGTATGCGTCTCCCGC
TTCCCTCGTCCCTTCCCTCAAACGGTCGGCTCAAAAACACCAAAGAGTGT
CCGTAGAACAAACAACCCACACCCACGCATACTCTCAAGACCCACAGCAC
AGCAACGGATACGGCAAGAAAAAACAAAAGCAGGCAAGCAGGCAAGCAGG
CAAGCAGGCAAGCAGGCAAGCAGGCAACCAGGCAAGCAGGCAAGCAGGCA
AGCAAGCAAGCAACCAGCGGTTTCGCCCACACACACACACAAACAAAAAA
AACAAGAAAACCATCGGCGCTCGAACAAAAAAAAATCGCACACACAAAAG
AGTACGGAGTAACAACACCGCAAACAACACATACGACGGAAAATTGTTGT
AGCCCCAAGGGTTATCGCCCGGGCCCTCCCTGTACTATAGTCAGCGCCCC
GCCCCTGGTGTGAACTGTGAACCACCAGGCGGGGGTTTAATATTCTGCTT
CGCACGTCTGAATTTGTGTACCGTATCGTTAGAGTCGATTGCGGACTCTT
GCGAGCACGCGTGTGTCGAAACGTCGCTACAAGTACAGTATGCGTCTCCC
GCTTCCCTCGTCCCTTCCCTCAAACGGTCGGCTCAAAAACACCAAAGAGT
GTCCGTAGAACAAACAACCCACACCCACGCATACTCTCAAGACCCACAGC
ACAGCAACGGATACGGCAAGAAAAAACAAAAGCAGGCAAGCAGGCAAGCA
GGCAAGCAGGCAAGCAGGCAAGCAGGCAACCAGGCAAGCAGGCAAGCAGG
CAAGCAAGCAAGCAACCAGCGGTTTCGCCCACACACACACACAAACAAAA
AAAACAAGAAAACCATCGGCGCTCGAACAAAAAAAAATCGCACACACAAA
AGAGTACGGAGTAACAACACCGCAAACAACACATACGACGGAAAATTGTT
GTAG
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