mRNA_S-dermatodea_contig9926.17854.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9926.17854.1
Unique NamemRNA_S-dermatodea_contig9926.17854.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9926.17854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9926contigS-dermatodea_contig9926:220..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size442
Cds size321
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9926.17854.1prot_S-dermatodea_contig9926.17854.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9926 220..551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.0119348-CDS-S-dermatodea_contig9926:219..2511622925438.0119348-CDS-S-dermatodea_contig9926:219..251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9926 220..251 +
1694079933.5739598-CDS-S-dermatodea_contig9926:219..2511694079933.5739598-CDS-S-dermatodea_contig9926:219..251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9926 220..251 +
1622925438.0265243-CDS-S-dermatodea_contig9926:262..5511622925438.0265243-CDS-S-dermatodea_contig9926:262..551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9926 263..551 +
1694079933.584316-CDS-S-dermatodea_contig9926:262..5511694079933.584316-CDS-S-dermatodea_contig9926:262..551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9926 263..551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.043059-UTR-S-dermatodea_contig9926:551..6721622925438.043059-UTR-S-dermatodea_contig9926:551..672Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9926 552..672 +
1694079933.5995033-UTR-S-dermatodea_contig9926:551..6721694079933.5995033-UTR-S-dermatodea_contig9926:551..672Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9926 552..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9926.17854.1

>prot_S-dermatodea_contig9926.17854.1 ID=prot_S-dermatodea_contig9926.17854.1|Name=mRNA_S-dermatodea_contig9926.17854.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
VGRELGGAAGRGGVGLKPPASSKTVRFNCDRECTEPNNNTNKEGKRRNGT
GRPRAFASSFLRAATRNRVERSMPPIERGTLKRGREGLQPKCFTAEACLI
RRIFGL*
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mRNA from alignment at S-dermatodea_contig9926:220..672+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9926.17854.1 ID=mRNA_S-dermatodea_contig9926.17854.1|Name=mRNA_S-dermatodea_contig9926.17854.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at S-dermatodea_contig9926:220..672+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGGAGGGAGCTTGGCGGGGCGGCCGGGCGGCCGGGGGGAGGGGGGGG
GTGGGTTTAAAACCACCGGCGTCGTCAAAAACTGTCCGGTTTAACTGCGA
TCGGGAGTGTACGGAACCAAACAACAACACCAACAAGGAAGGGAAGAGAC
GGAACGGGACAGGACGGCCCCGTGCGTTTGCCTCCTCCTTCCTCCGTGCG
GCGACGCGGAACCGCGTGGAGCGATCGATGCCCCCGATCGAAAGGGGGAC
GCTGAAGCGAGGGAGGGAGGGACTCCAGCCTAAATGTTTCACGGCGGAGG
CATGCCTCATCCGGCGTATATTTGGGTTATAGCACCAGCTGATGCTACGG
CAGCGCGCATGCCCCCCCCCCCTTCCCCCTTCCCCTTTCCCTTCCCCTTC
TCCCCCCCCCGCCAAGGTCGACCGCTCCTCCCGAGCCAGTGCTGGCATCC
GTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9926:220..672+

>mRNA_S-dermatodea_contig9926.17854.1 ID=mRNA_S-dermatodea_contig9926.17854.1|Name=mRNA_S-dermatodea_contig9926.17854.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig9926:220..672+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGGAGGGAGCTTGGCGGGGCGGCCGGGCGGTCGGGAGGGAGCTTGGC
GGGGCGGCCGGGCGGGGGGGGGTGGGTTTAAAACCACCGGCGTCGTCAAA
AACTGTCCGGTTTAACTGCGATCGGGAGTGTACGGAACCAAACAACAACA
CCAACAAGGAAGGGAAGAGACGGAACGGGACAGGACGGCCCCGTGCGTTT
GCCTCCTCCTTCCTCCGTGCGGCGACGCGGAACCGCGTGGAGCGATCGAT
GCCCCCGATCGAAAGGGGGACGCTGAAGCGAGGGAGGGAGGGACTCCAGC
CTAAATGTTTCACGGCGGAGGCATGCCTCATCCGGCGTATATTTGGGTTA
TAGGGGGGGGGTGGGTTTAAAACCACCGGCGTCGTCAAAAACTGTCCGGT
TTAACTGCGATCGGGAGTGTACGGAACCAAACAACAACACCAACAAGGAA
GGGAAGAGACGGAACGGGACAGGACGGCCCCGTGCGTTTGCCTCCTCCTT
CCTCCGTGCGGCGACGCGGAACCGCGTGGAGCGATCGATGCCCCCGATCG
AAAGGGGGACGCTGAAGCGAGGGAGGGAGGGACTCCAGCCTAAATGTTTC
ACGGCGGAGGCATGCCTCATCCGGCGTATATTTGGGTTATAG
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