mRNA_S-dermatodea_contig12931.1782.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12931.1782.1
Unique NamemRNA_S-dermatodea_contig12931.1782.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12931.1782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12931contigS-dermatodea_contig12931:809..1550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12931.1782.1prot_S-dermatodea_contig12931.1782.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12931 809..1520 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.8427405-CDS-S-dermatodea_contig12931:808..9941622924267.8427405-CDS-S-dermatodea_contig12931:808..994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12931 809..994 -
1694079137.9423685-CDS-S-dermatodea_contig12931:808..9941694079137.9423685-CDS-S-dermatodea_contig12931:808..994Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12931 809..994 -
1622924267.8558347-CDS-S-dermatodea_contig12931:1454..15201622924267.8558347-CDS-S-dermatodea_contig12931:1454..1520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12931 1455..1520 -
1694079137.9500449-CDS-S-dermatodea_contig12931:1454..15201694079137.9500449-CDS-S-dermatodea_contig12931:1454..1520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12931 1455..1520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.8633895-UTR-S-dermatodea_contig12931:1520..15501622924267.8633895-UTR-S-dermatodea_contig12931:1520..1550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12931 1521..1550 -
1694079137.958342-UTR-S-dermatodea_contig12931:1520..15501694079137.958342-UTR-S-dermatodea_contig12931:1520..1550Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12931 1521..1550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12931.1782.1

>prot_S-dermatodea_contig12931.1782.1 ID=prot_S-dermatodea_contig12931.1782.1|Name=mRNA_S-dermatodea_contig12931.1782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MAKTAKEHLRRVDVVLTNRACLTVSLDGTCVLERSGRFKREWMNRFPWRR
KQSDNCVLRATKDGLEVVDGEKRVWGISAGNLA*
back to top

mRNA from alignment at S-dermatodea_contig12931:809..1550-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12931.1782.1 ID=mRNA_S-dermatodea_contig12931.1782.1|Name=mRNA_S-dermatodea_contig12931.1782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=742bp|location=Sequence derived from alignment at S-dermatodea_contig12931:809..1550- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAACCATTGGACAAGGAAGGAACTCAAGATGGCCAAGACGGCGAAAGA
ACACCTTCGGCGGGTGGACGTCGTCCTAACGAACAGGGCATGTTTGGTGA
GTTGGTTGTGTCGAAGGCGGGACGAGGTATCACGGCCGTAGCTTGGACCT
GGCCATGTTGTTATCGCGCTGCTATTAGTGTATCGTCGTTGTTTGCGCCA
AGGCTCTGTCACAAGCAAGGGAGGAAATGCTAGGAAGAACCGACCACAAA
GGTGTGTGTCTGGAATCGTACGGCAAGCGATGGTAAGCGGAAGAAAGGAA
AGACACGCCTCGATAGTGAAATTACGGTACATCAACAAAAGCTAGCGCTT
GTCGAGAGTGCACGTGCAGTTTGTTGAAACGGTGGAAACCGTCCTTCTCT
AAAATTTAGCTTGCGATCTGCTAGCTCATGCGCAAAGTTCACTGCAAAGA
TCTCCAATGCAAACATGGAACTTGCGTCTCACCAAGGCATTCCGTCCATA
GCTCCGTGTCTCATCCTTCCCGCCGATTCAATGCTCGCTCCCTAAAAACG
TCGCAGACTGTCAGCCTGGACGGCACCTGCGTCCTCGAGAGGTCTGGGCG
CTTTAAGAGGGAGTGGATGAACCGCTTCCCGTGGAGGCGGAAGCAAAGTG
ACAACTGCGTTCTCCGCGCGACCAAGGACGGCCTCGAAGTCGTCGACGGA
GAGAAGAGAGTATGGGGTATTTCCGCGGGCAACCTTGCCTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12931:809..1550-

>mRNA_S-dermatodea_contig12931.1782.1 ID=mRNA_S-dermatodea_contig12931.1782.1|Name=mRNA_S-dermatodea_contig12931.1782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig12931:809..1550- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCAAGACGGCGAAAGAACACCTTCGGCGGGTGGACGTCGTCCTAAC
GAACAGGGCATGTTTGATGGCCAAGACGGCGAAAGAACACCTTCGGCGGG
TGGACGTCGTCCTAACGAACAGGGCATGTTTGACTGTCAGCCTGGACGGC
ACCTGCGTCCTCGAGAGGTCTGGGCGCTTTAAGAGGGAGTGGATGAACCG
CTTCCCGTGGAGGCGGAAGCAAAGTGACAACTGCGTTCTCCGCGCGACCA
AGGACGGCCTCGAAGTCGTCGACGGAGAGAAGAGAGTATGGGGTATTTCC
GCGGGCAACCTTGCCTGAACTGTCAGCCTGGACGGCACCTGCGTCCTCGA
GAGGTCTGGGCGCTTTAAGAGGGAGTGGATGAACCGCTTCCCGTGGAGGC
GGAAGCAAAGTGACAACTGCGTTCTCCGCGCGACCAAGGACGGCCTCGAA
GTCGTCGACGGAGAGAAGAGAGTATGGGGTATTTCCGCGGGCAACCTTGC
CTGA
back to top