mRNA_S-dermatodea_contig9776.17759.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9776.17759.1
Unique NamemRNA_S-dermatodea_contig9776.17759.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 6.600e-78
Identity = 117/132 (88.64%), Postives = 130/132 (98.48%), Query Frame = 1
Query:    1 TGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            +GKTLPQWLSEKKRRSLSKDV+YR+RIELLQDFDFPTASQKVC+SPD Q+VIVAGTYPPQIKVF+VADL MKFERHLDCEA+DF+PL+EGYEKLAFLLADRTLAFHAGYG+HH+VR+PRFGRSLAYQRETC+
Sbjct:   19 SGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAFHAGYGKHHSVRIPRFGRSLAYQRETCD 150          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.730e-58
Identity = 93/132 (70.45%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 TGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            +GKTLPQWL++K++R+LSKD  YR+RIELLQDF+FPTASQ + +SPDGQFVIV GTYPPQ+KV++VA+L MKFERHLD E +    LS G+EKL FL ADRTLAFHA YG HHAVR+PRFGR LAYQ+  C+
Sbjct:   36 SGKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVKVYEVAELSMKFERHLDAECVAMEVLSAGFEKLVFLQADRTLAFHAAYGMHHAVRIPRFGRDLAYQQAACD 167          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A2R5GXA8_9STRA (Nucleolar protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXA8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 6.890e-48
Identity = 76/131 (58.02%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    4 GKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            GKTLPQW+S+K R+SL+KD +YR+RIEL+QDF FP  S +V +SPDG++++  G+YPPQ+KV+D  +L MKFERHLD E +    LS  + KL FL  DRT+AFHA YGRHH +R+P+FGR +AY    CE
Sbjct:   17 GKTLPQWISDKNRKSLAKDEEYRRRIELVQDFYFPATSGRVKVSPDGEYIVATGSYPPQVKVYDTRELSMKFERHLDAEVVQVQVLSTDFTKLVFLGNDRTVAFHAAYGRHHMLRIPKFGRDMAYDPAACE 147          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL)

HSP 1 Score: 172 bits (436), Expect = 1.020e-47
Identity = 78/132 (59.09%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 TGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            +GKTLPQWL+EK ++SLS+D DYR+R+ELLQDF FP+ SQ+V +S DG +++  G YPP +KVFDV +L +KFER LD E + F  LS  + KLAFL ADRTLAFHA YG H+ +R+P+FGR + Y RE C+
Sbjct:   19 SGKTLPQWLAEKTKKSLSRDEDYRRRVELLQDFHFPSGSQRVKMSLDGNYIVATGMYPPIVKVFDVRELSLKFERRLDSEVVQFEILSPDFGKLAFLQADRTLAFHAPYGSHYNLRIPKFGRDMCYHRENCD 150          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.060e-47
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 1
Query:    1 TGKTLPQWLSEK--KRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            +GKTLPQWL+EK   R++L+KD DYR+R+ELLQDF FP ASQ+V +S DG FV+  G YPP +KVFDV DL +KFER LD E + F  L+  + KLAFL ADR++AFHA YG H+ +R+P+FGR + Y RE CE
Sbjct:   19 SGKTLPQWLNEKGGSRKALAKDEDYRRRVELLQDFHFPAASQRVRMSADGNFVVATGVYPPSVKVFDVRDLSLKFERGLDAEVVQFEVLAADFGKLAFLQADRSVAFHAPYGTHYNMRIPKFGRDMTYHRENCE 152          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A812NRZ5_9DINO (Nol10 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NRZ5_9DINO)

HSP 1 Score: 158 bits (400), Expect = 4.890e-47
Identity = 75/126 (59.52%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    4 GKTLPQWLSEKKRRSLSK-DVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAY 378
            GK LP WL E+KRR+L K D  Y +RI+LLQDFDF TASQ + +S DG ++   G YPPQ+KV+DV DLGMKFERH+D E + F  LSE + K+ FL  DRTL FHA YGRH+  R+P+FGR +AY
Sbjct:   17 GKKLPAWLPEQKRRALLKEDEGYARRIQLLQDFDFSTASQDIKMSSDGLYICACGVYPPQVKVYDVQDLGMKFERHMDAEVVAFDVLSEDWSKMVFLQVDRTLEFHAAYGRHYRTRVPKFGRCMAY 142          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A024TJ26_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJ26_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.960e-47
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    4 GKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            GKTLPQWL++K R++LS+D DYR+R+ELLQDF FP +SQ+V +SPDG +VI +GTYPP IKV+DV DL +KFER LD E +  + LSE + KLA L  DR++AFHA YG H +VR+P+ GR + Y R  C+
Sbjct:   20 GKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIASGTYPPSIKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAFHAPYGTHTSVRIPKAGRDMVYHRGNCD 150          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A4D9D2Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Q4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.080e-47
Identity = 72/131 (54.96%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    4 GKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            GK +PQWLSEK RR LSK+ DYR+R+EL+QD +FPTASQ++ +SPDG+F++ +G YPP ++V+++ ++ +KFER L  E +DFL LSE   KL FL  DRTL+FHA YG H+++R+P FGR+L Y   +C+
Sbjct:   20 GKAVPQWLSEKHRRQLSKEEDYRRRVELIQDLEFPTASQRLRVSPDGRFLVASGMYPPAVRVYELQEMSLKFERRLTAEVVDFLILSEDVGKLCFLQNDRTLSFHAPYGTHYSLRIPTFGRALTYHPPSCD 150          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: W4GCA3_9STRA (NUC153 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCA3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 8.980e-47
Identity = 77/131 (58.78%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    4 GKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            GKTLPQW+++K RR+LS+D DY++R+ELLQDF FP +SQ+V +SPDG +VI AGTYPP IKV+DV DL +KFER LD E +  + LSE + KLA L  DR++AFHA YG H +VR+P+ GR + Y R  C+
Sbjct:   20 GKTLPQWIAQKTRRALSRDEDYQRRLELLQDFHFPVSSQRVTMSPDGHYVIAAGTYPPSIKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAFHAPYGTHTSVRIPKAGRDMVYHRGDCD 150          
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Match: A0A7R9YC92_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC92_9STRA)

HSP 1 Score: 167 bits (423), Expect = 9.090e-47
Identity = 73/132 (55.30%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 TGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQFVIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLADRTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE 396
            + + LP WLSE ++R L  D D+R+R+ELL DF+FP ASQ+V LS DG++ +  G YPP +K++++ +LG+K ER LDCE +DFL LSE Y K+A LLADRTLAFHA YG+H+ +R+P+FGR L YQ  +C+
Sbjct:   31 SARALPVWLSEGQKRKLRADDDFRRRVELLNDFEFPGASQRVKLSADGRYAVATGVYPPSVKIYELEELGLKVERRLDCEVVDFLLLSEDYSKIALLLADRTLAFHAAYGKHYELRIPKFGRCLDYQPTSCD 162          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9776.17759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI6.600e-7888.64NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA4.730e-5870.45WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2R5GXA8_9STRA6.890e-4858.02Nucleolar protein 10 n=1 Tax=Hondaea fermentalgian... [more]
A0A8K1FME9_PYTOL1.020e-4759.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VIN9_9STRA2.060e-4759.70NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
A0A812NRZ5_9DINO4.890e-4759.52Nol10 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A024TJ26_9STRA5.960e-4758.78NUC153 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A4D9D2Q4_9STRA6.080e-4754.96Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W4GCA3_9STRA8.980e-4758.78NUC153 domain-containing protein n=5 Tax=Aphanomyc... [more]
A0A7R9YC92_9STRA9.090e-4755.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9776contigS-dermatodea_contig9776:109..3552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue2.5e-65
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUC153 and WD40-repeat domain protein
Ec32 orthologEc-24_001710.1
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.6209674-CDS-S-dermatodea_contig9776:108..3171622925430.6209674-CDS-S-dermatodea_contig9776:108..317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9776 109..317 -
1694079928.5253668-CDS-S-dermatodea_contig9776:108..3171694079928.5253668-CDS-S-dermatodea_contig9776:108..317Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9776 109..317 -
1622925430.6355789-CDS-S-dermatodea_contig9776:3365..35521622925430.6355789-CDS-S-dermatodea_contig9776:3365..3552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9776 3366..3552 -
1694079928.5385046-CDS-S-dermatodea_contig9776:3365..35521694079928.5385046-CDS-S-dermatodea_contig9776:3365..3552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9776 3366..3552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9776.17759.1prot_S-dermatodea_contig9776.17759.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9776 109..3552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9776.17759.1

>prot_S-dermatodea_contig9776.17759.1 ID=prot_S-dermatodea_contig9776.17759.1|Name=mRNA_S-dermatodea_contig9776.17759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
TGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCLSPDGQF
VIVAGTYPPQIKVFDVADLGMKFERHLDCEAIDFLPLSEGYEKLAFLLAD
RTLAFHAGYGRHHAVRLPRFGRSLAYQRETCE
back to top

mRNA from alignment at S-dermatodea_contig9776:109..3552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9776.17759.1 ID=mRNA_S-dermatodea_contig9776.17759.1|Name=mRNA_S-dermatodea_contig9776.17759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3444bp|location=Sequence derived from alignment at S-dermatodea_contig9776:109..3552- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGGCAAAACCCTTCCCCAGTGGCTGTCCGAGAAGAAGCGGCGGTCCCT CTCGAAGGATGTCGACTACCGCAAGAGAATCGAGCTGCTGCAGGACTTCG ACTTCCCGACCGCGTCGCAGAAGGTCTGCCTGTCGCCGGATGGGCAGTTC GTGATCGTCGCTGGGACGTACCCGCCGCAGATCAAGGGTGAGTCAGTCCC AGTCCAGTCCGCCACCGATGACATCATGCCATGCGAAGTTTTGTGGGCAG TACAGCAAGGGTCCACCCAGGTCCTGTCGTGCCCTGTCCTGCCCCGATGA GTTTTTGATCGTACAAGTACACTTCCTGTGTTTATTTTTCTAGAAAAACA AACAACATACATACAGAGCAGAGAGGAGTGGTGTCACGCGGCCGCCGCGG TTTGCGCGGTGGTCCTCCGGGTGTTTTGTTTTTTTTCGCGCGTCGGGAAG GAGCTACAGTCCCCACCGCGCGGCGGGGTGATGGTGGCAGCAAAGCAACC CCCGCGCGCGCCTCGGCCGGGCAAAAGCCACCAGTGTGTACGTTGTATCG ACGTAGTGTTGTAGGCTTGCTTTTTTTTTGTTTTTTTCGTCGATGGGGTG CGTTACCGTCGGAGCTCTCTTGGGACTGAGTTATGTTGTACACACCCCGT CGGTTTGTATCGAAGCAGCTGGGATGGCAGTGGGATGGACTCTCTAAACA CAGTAACATTTGCTGGCATGAATGTGTAATAACCGTTTCATCACAGTCCC CGCGGGGGGGCTCAGGGAATCGAAAAGGAAGTCCGTATTTGTGCAAATTT TGTTCATATTACAGTAGTGGGTAGACACGGCTACGCCCGTGTGAAGTGTG CGTGATCGATTGTGTATATTGATTTTATACAAGGATGCTGTCTGATGCCA AACAACTTGATATTTGTTTTGAGCGATCTTTTTTTATGAAAAAAAGCGAA ATCACAGCAGCAGCGACACGCACAGCAGCGACACGCACAGTAGCTCAACC GCGTTCGACCTCCGTGTCGCGTTCCGTCGGCATATCGCCCTGCCAACGTT GTTGCATTAATTAATATGATATTCTGCATCTCCTGGCGGACTATGACCAT GTGTGTGTTAGCTTCGGGTGGCGCGCCCGCCTGACCTGCCGACGATGCTA GGGGGCGGAGGTCTCCAAAACGCACCGGAGATTCGCACTTGAGATGTTAT GATATGAACGCTCTAATTGCATTAGCATGTACCAGTATGTAAAGGCAGGA CTTTTGAAGCCGAAATGAGGATACGCGATTTTTCGCGCTTTTTTTTTTCC GATCTGCTAAATTTAGTATTTACAGATTTTTCTATCAAAACACGCGAGCC GTCTTGGACGTTTGGGTGTGTATATAGACTTATACCGTGGTACAGTAGTA TATATGGACACCCGGAGTTAACCCTTTTGGGACTACGGCTGTTTTCGGGT AGTAACTGTTTGCTACTATTATTTACCCTTTTGCGACGAAGCCTGGGAGA CGAAGCCTGTTTTCGGGTAACGGTAACGGTAACTGTAACTGTTGGCTACC ATAATAATAATAGCCAACAGTTCCTCCAAAACAGCTTTAGTCCCAAAACA AAAGGGTATAAAATAATAGCAAGCATTTACCCGAAAACAGCCTTAGTCCC AAAAGGGTTAAGAGAAAAACACGAAAACACAAGGTTTTGATAATTTGTTC CATCGCGACAGGTCGTGATTGTTTTTTGTTCGCCGCCGGCCCTAAAACGC GACCCTGACATAGCCGAGATAATTTTTTGTGTCTTCTCGCGTCAACCGCG AGGCACACTCTAGCTGTAGCTGTGACTGACTATTACGGAGGAGCATACTG TAGTTGACAGGTCCAAATAGCATGGTATAGCCAATAATACCCAACTATTC CTATCAATACTAATATTTCGACCATTAATACCCAGACAACAACAGAAATC TCATGAAAATGAAAAACACGAGATTATGGCCATATTCATGAACATCGACG TTGAAATATTATCGATGATTCCGGCCTATTTTTGTTATTCCAGGTTGAGA CTTGTGGCGAATTTGGACCTGTTAACTCTGGTCCCCCGAATATACTACTT ACTCTGTACACTCACTATTTGTTTTCATACTTCGAAGTATTACTTAGGGT ACACAGAGTAATCAGGGCCATTTTTTCCTCAGCACAAGCGTTTTCAGGTA ATCTATGGCCCGAACAACAAATACCCTTGTTGTATTTTTTTAACAAGAAA AGTTTTTGAGATTGATACTGATTATTGATTGTTGCAGTCCAGAGCATACA AGCACATTACTCCTCCTTACTGTTTTCCTGTTTTCCTCCCTAACACTTAA CAAAATAAAACAGTTTTTCATACAAATACCCCTTAACCCTTTTGGTACTA TTATGTTAGTATTAGTATTACTAGTACTATTATATTGGTATTAGTAGGGC TTTCCGAAATTACCAAAACCTCTCTCGATACCAGTCGACAGCTACAGCCC CGCTTCCCTCGGGCTCCGTTTTCATTCCTACGCCATCAGCCACGGGGTTC CCCAGGGCTCCACTTCAAGCACGCCTATTTACGCGCTAACCGGCGCTCCA AACAGGGGGCTAGTGCCAAGAGGGCTAAGCGTTGACTCCCTCCGCACACG TCGCCCCCCTCGGTCGTTTGTAGTATTATAGTATAGTAAAGTATAGTTTA CTATACTATAGGGTATTAGAGTATTAATAGTTGCCACGTGTTCGATATTT TCGGGGCTTTTCAGGTAACCGGCGATTACACATATGCCTTTTAACGCCAT CAGCGCCAAAACCGGTTTACATTATCTTAGGGTATAGAGCTAATACAATA CTTAAGTACAGTAGTGTATTAATAGTGTGAGATTCTTACATTTGACAGCC GGTTGGAGGTTGGTAGTGTGAGATTGGTTACACATGCAGTGCCGTGTGTA TGTGTGTGTGGGTGGGCGGGTGTGTGTGGGTGTTTTTTTTTCTTTTTTTT TTTCTGTTTTAAATCCTTTCGTTTTGAAGTTCATCTTGAAATGTACATAT TAATAGTTGATCGGTTTCCCCCCGAAACTAGCATCAAATTACGAATTTCA AAACATAAGGCGAGCGGAGTTGGGGTCCACATTTTAGCACTTTTTGTGAA AAGAAGAGAAGAAATAAGACCCAAACTTACTCCCCCCTCCACTCCACCCC CCCATATTTCTCGCTTCTACTGCAACTCCCATCAGTCTTCGACGTGGCCG ACCTGGGGATGAAGTTCGAGAGACACCTAGACTGCGAGGCGATCGACTTC CTACCCCTGTCGGAGGGCTACGAGAAGCTCGCCTTCCTCCTGGCCGACCG AACGCTCGCTTTCCACGCCGGCTACGGTCGTCATCACGCGGTCCGGTTAC CCCGGTTCGGGAGGTCTCTGGCGTATCAGCGGGAGACTTGTGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9776:109..3552-

>mRNA_S-dermatodea_contig9776.17759.1 ID=mRNA_S-dermatodea_contig9776.17759.1|Name=mRNA_S-dermatodea_contig9776.17759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig9776:109..3552- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGGCAAAACCCTTCCCCAGTGGCTGTCCGAGAAGAAGCGGCGGTCCCT
CTCGAAGGATGTCGACTACCGCAAGAGAATCGAGCTGCTGCAGGACTTCG
ACTTCCCGACCGCGTCGCAGAAGGTCTGCCTGTCGCCGGATGGGCAGTTC
GTGATCGTCGCTGGGACGTACCCGCCGCAGATCAAGGACAGGCAAAACCC
TTCCCCAGTGGCTGTCCGAGAAGAAGCGGCGGTCCCTCTCGAAGGATGTC
GACTACCGCAAGAGAATCGAGCTGCTGCAGGACTTCGACTTCCCGACCGC
GTCGCAGAAGGTCTGCCTGTCGCCGGATGGGCAGTTCGTGATCGTCGCTG
GGACGTACCCGCCGCAGATCAAGGTCTTCGACGTGGCCGACCTGGGGATG
AAGTTCGAGAGACACCTAGACTGCGAGGCGATCGACTTCCTACCCCTGTC
GGAGGGCTACGAGAAGCTCGCCTTCCTCCTGGCCGACCGAACGCTCGCTT
TCCACGCCGGCTACGGTCGTCATCACGCGGTCCGGTTACCCCGGTTCGGG
AGGTCTCTGGCGTATCAGCGGGAGACTTGTGAGTCTTCGACGTGGCCGAC
CTGGGGATGAAGTTCGAGAGACACCTAGACTGCGAGGCGATCGACTTCCT
ACCCCTGTCGGAGGGCTACGAGAAGCTCGCCTTCCTCCTGGCCGACCGAA
CGCTCGCTTTCCACGCCGGCTACGGTCGTCATCACGCGGTCCGGTTACCC
CGGTTCGGGAGGTCTCTGGCGTATCAGCGGGAGACTTGTGAG
back to top