mRNA_S-dermatodea_contig975.17736.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig975.17736.1
Unique NamemRNA_S-dermatodea_contig975.17736.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig975.17736.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 9.150e-10
Identity = 45/127 (35.43%), Postives = 61/127 (48.03%), Query Frame = 3 
Query:    3 AVFATIMHAITRLFKVAEKRTGEMKRQLLEQDKDGLSVAMHACLGRNSVVLASILEEIRLSEAYLGLTAQDHSQTTLLMHAAGVGKAAGYQAVFHALEDALAED-NLIEHMTMRSGDDQTLLMIAAS 380
            A     + A+ + +     R  EM+ QL  +D++G++  M A    +  VL  +L EI  +EA   L   DH   TLLMHAA  G A  +Q    A+  A   D +L E M  R  D   LLM AAS
Sbjct:  117 ATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGDEDLREMMVERDSDGLNLLMHAAS 243
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig975.17736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN08_ECTSI9.150e-1035.43Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig975contigS-dermatodea_contig975:4442..8419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size409
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig975.17736.1prot_S-dermatodea_contig975.17736.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig975 4442..8399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.8681812-CDS-S-dermatodea_contig975:4441..45311622925428.8681812-CDS-S-dermatodea_contig975:4441..4531Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 4442..4531 -
1694079927.286766-CDS-S-dermatodea_contig975:4441..45311694079927.286766-CDS-S-dermatodea_contig975:4441..4531Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 4442..4531 -
1622925428.8785229-CDS-S-dermatodea_contig975:4835..49641622925428.8785229-CDS-S-dermatodea_contig975:4835..4964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 4836..4964 -
1694079927.2970722-CDS-S-dermatodea_contig975:4835..49641694079927.2970722-CDS-S-dermatodea_contig975:4835..4964Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 4836..4964 -
1622925428.888346-CDS-S-dermatodea_contig975:5609..57441622925428.888346-CDS-S-dermatodea_contig975:5609..5744Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 5610..5744 -
1694079927.307959-CDS-S-dermatodea_contig975:5609..57441694079927.307959-CDS-S-dermatodea_contig975:5609..5744Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 5610..5744 -
1622925428.9026756-CDS-S-dermatodea_contig975:8366..83991622925428.9026756-CDS-S-dermatodea_contig975:8366..8399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 8367..8399 -
1694079927.3191228-CDS-S-dermatodea_contig975:8366..83991694079927.3191228-CDS-S-dermatodea_contig975:8366..8399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig975 8367..8399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925428.913776-UTR-S-dermatodea_contig975:8399..84191622925428.913776-UTR-S-dermatodea_contig975:8399..8419Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig975 8400..8419 -
1694079927.3306384-UTR-S-dermatodea_contig975:8399..84191694079927.3306384-UTR-S-dermatodea_contig975:8399..8419Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig975 8400..8419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig975.17736.1

>prot_S-dermatodea_contig975.17736.1 ID=prot_S-dermatodea_contig975.17736.1|Name=mRNA_S-dermatodea_contig975.17736.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
MHAITRLFKVAEKRTGEMKRQLLEQDKDGLSVAMHACLGRNSVVLASILE
EIRLSEAYLGLTAQDHSQTTLLMHAAGVGKAAGYQAVFHALEDALAEDNL
IEHMTMRSGDDQTLLMIAASSGDKMTFKA
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mRNA from alignment at S-dermatodea_contig975:4442..8419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig975.17736.1 ID=mRNA_S-dermatodea_contig975.17736.1|Name=mRNA_S-dermatodea_contig975.17736.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3978bp|location=Sequence derived from alignment at S-dermatodea_contig975:4442..8419- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGTGTTTGCCACGATCATGCACGCCATCACGAGGTTGTTCAAAGTA
GCGGTGAGTGATGGAGACTGTGGCGGGGTCCAATCGAGCGTATAGTGTAG
CCGATCGAATCGCATTTCAGTGTGGGTATATTATGTTGGAATGTGGTGTC
TGTGACGATGATGTCTCGTGTAGATGCGCAGAAGTGGAACAGTGGCTGCT
AAGCTCACTCGTGTTGAGAGAAGGCAAATTATATTGAAGTGGCGCTTATG
TGGCCAAAGACTAAGAAATATGAAGATAATTGAAGAGGAAAGTAGAATAA
AAGGAGAGTTAATCGATGGGGGTGGACCGCATCCGATACCTCGGTATAAA
ATACGCTTCTCGGGCTATTGTACTCCCTGACTAGGTTCCGTTCTACTACT
GCTGTACCCCGGATACTTCTACACAAGTCCCTAGAACAACTATGTTATAA
GTACTACCAACCGTGTTCATAAGAAACAGTATTCCATTGTGAAGTGCAAA
CTTCTCCAAGACGAAACGTAAAACTGCTCTATCCTCATGGGCATGACACC
GAGAACCGTTCATCGACCAAGAAGGTACGACTAGATGTCGTGTATTTCCA
ATATATTACAAACCAGGAACGAACATGGGACGGTTACACAATCTCACGTT
GTACGCACGACCGAAAAACATGGAGTAAATGCTGCTCTGCCGGACTTGTA
CAAGTATACACATACTATGCCGACCGGCCACTTGCGTGTTCACCACGGTC
ATGCACGATGCACGCATGGCGGGGTTGTTCAAAGAAGCAGTGAGTGATGG
TGCTGTCGAGGGGGTCCAGACGAGCGTAGTAGCCGATAGAATCACAAAGT
CCACCGGCGGGGAGACCTGGAACGAACGAGCATGGAACGCTTTTTAGTCT
CACCTTGCACACACGACCAACAAAATACACAACAACAACGGAATCTTGTA
TTTTATTAAAAATTCTCGGGGGGTACACCACCTGTGATTCTGTCCGTGTG
CCACAATTTGCAAATGAGGAGACATCCCAAGCAGCACGATACTAGTAGGT
AGCCACGGCTACGCCCGTGAGGTGAAAAAGCCTACTATTTTCAACACTTG
GTGCTCAACACAAACATCAAGTTGTTTGGCATCACTTTTTCCTAAAGGAT
TCCGGCCTCACAATGTCGTTCTCTAAAATCGCTACGCATATTAAAATCGG
TTATACCGGTATTAATTGTAGTAATAAAACAAGTACACCACTAGTATAGG
TGTACAATGCTTGTGTCATACAATTTAATGCAAGAGAAGTATGGCCGTCA
TATGCAAGTTTTGTATCACGGTAAATTTGCAACGGGTTCATGTAGAGCTC
TATTAATAGAGCTCTACGCTGTGTTGTTTTTTGTTCGGTGTAGGGGTGCT
GGATTTCAATTGCTCTTGTGCCTTCATGTGACCACGAGCGGGATCAGTAT
CCACTGTGCAATTATTGCAAAAATGGCGGGCCGGTCGGTTGTAAGTGTGA
AAATCAATCAATCAATCTATCGATCAAGTTGTGGACTGTATGTAGAAGAG
CCAGTACGTCCGATGCGAAACATCACAGGTTTGCTGCCTCGTCGCCGGGG
GACCGGGCGAGCGAGCGGCATTGCTAAGAGCTTTTTTTCCGAACCAAATC
AAAGAACTAGAATCGCGTCGAACGTATGTATGCGAGTTTGGATTTTCAGC
CCGGGCGCCCGTCGCCCTTCTGTGCTGCTACGATACAGCTATTAATAATA
GCATTTCGCCGCAAACCTCGCCGGTTGGTATGTATGCATAAAGTGATATC
AGTACGTTACAAGGATTACTACAAGGGCTCTCTTCGGGACGTGGGAGAGC
TACGAGTGGAGGGTGTTGCAAGGAAACGTGGGCCCCGTTGTTTTACCACA
GAAGCATGTTGCTAAAAGCAACCAACAAGGCATTATCATGTGGAAAATGT
GGCACTGAAAACTATTGTCATCATAGCCGCTGTTTTGGTTGGACTGTATT
ATAGTTTGCGCGTCTCAGAGGTGGCGTTGCACTCAGCATTCGGAGTTATC
CGATCAACCAGCAGGTAGAAGAATGATTACTGCTGTGAACAATGGTTTGT
ATTTACGCAATCCTTCCTAAAAAGAGCCGCGCATGCATGCATGCATGCAT
GCATGTGCGTCTGTCAATGCAATAAATCAGCACATGCCCACATTAATGGC
GGTGTTAATTGCACGTCTCCCAATGTTTAGACTCTCTCGTTTTGAGCTAC
TACACGCGGTGAAGCCTGCTCACGTCCGTGCTCCGGGGCAAGGGATCCCA
AGCACGGCAGCACGTAAAAGGAGAACTCGACGACGTTCCAATGGTGGCTC
GATACCTTTCCAGCACTCAACGTGGTTTCAGGGGCATTGCTATGCTGTAT
TATGAACAAGAACCTCTACCACATCACATTTTAGCTCAACGTGCGGAACC
ACCCTCCCCCCTTCTTGGCTCCGCATTGTGCGAATCCCAAAAGGTTAATG
TAGTTAGTACTGTCACAACTACGTAGCGTGTTTTGAACTTTGTGTGCCTG
ACATCAAACCGTTATTTGCCTTCGATTCACGTTAGACGAAAGAAAATATG
CAAATTCCGAACGAAGGCCGCAGTCGAGCATCACGCGAAACGCCTACTTG
TATGGGCAATGCTCCGTGTTGCCAGGAAAAGAGAACGGGGGAGATGAAAA
GGCAGCTGCTGGAACAAGACAAAGACGGGCTATCGGTTGCCATGCACGCG
TGCCTGGGACGCAATTCGGTAGTTCTTGCTTCCATTCTCGAAGAGATTCG
CCTCTCCGAGGTGAGACTGAAAAATAATGAATTTTACTATAATGTGCAAG
GATACTGCCCATATTTGTGGCGATTGGCTGCCACGGGGTTAACGAGTTGA
TACCGGTGCGTAGAAATATACAGTGAAGAAGTTTTCCTGCTTGATGAAGG
GCCAGAGTTAACAAACTCTACACTCCGTCGCGAGTTGGGGACGTTGTGGA
GAGCCCTGGTTCGCCTTGTAATACACGAGCATTCGCCATCTTCTTGCGCG
AGTTGTTGCATTCGGCCCCCCGCCGCCGCTCCTCGTTTGATTGATTGATT
ATGATTCATTTTGATTGGTTGTCACACGTATAACCGACCGGCCCACCATT
TTTACAATTGCAAAAGTGGATGCTGATCCCCCTCGTGGTCAGGTTTTGCT
CAGGTCGCTCAGCCGCGCGTTTGTCGAAGATTCCAGGATACCCGTGCCAA
CCCCCCCCTCGATTTGTTACTGGTATTGTCTGTTGGGTTCACAATAGTTT
CAAAAGTAGGTAACGACGGATGAGTGTCCTATACACTAAGCGTTTGGTGG
TCAATTGCGCTTTGAAGCTGCCCCACCGAACTTCCTTGAGCAAGGGTATC
GCCCACGTCCTACCGTTTGCTGGTATGCTGTGAATGCTTGAATTCCTTGA
TCCAGGCATACCTGGGGCTGACTGCGCAAGACCACAGCCAGACTACACTT
CTCATGCACGCTGCTGGCGTGGGTAAAGCGGCCGGGTACCAAGCTGTGTT
TCACGCTCTGGAGGACGCCCTCGCGGAAGATAATGTAAGAATACATGCAT
GCTACTACTGCGATCTGCCAGATCACATGAAGATACGAAGATATATGACC
TAAGCTTGTTCAACGGCACACACCACGCCAATCTCGAGCCTGTAGGGCAG
GGCTTGCTGCATACAAAGTGTGGCCAATGGTACCCTTTGTTTACCTGCAT
CTTTCTGCGGAATTATAACTTAACTTACGTCCCTTCTCCTTGCAAGTATC
TCGTCTACCCGCTCTGACCTTCAAAACAACGGACGCTGTGCATCAACTTG
TTTTTTGCTCTCCGGCGTGCTCGCGCGACTCCGCCTAGCTGATTGAGCAC
ATGACAATGAGATCCGGAGACGACCAGACCTTGCTGATGATCGCGGCGTC
ATCGGGAGACAAGATGACGTTCAAGGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig975:4442..8419-

>mRNA_S-dermatodea_contig975.17736.1 ID=mRNA_S-dermatodea_contig975.17736.1|Name=mRNA_S-dermatodea_contig975.17736.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig975:4442..8419- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACGCCATCACGAGGTTGTTCAAAGTAGCGATGCACGCCATCACGAG
GTTGTTCAAAGTAGCGGAAAAGAGAACGGGGGAGATGAAAAGGCAGCTGC
TGGAACAAGACAAAGACGGGCTATCGGTTGCCATGCACGCGTGCCTGGGA
CGCAATTCGGTAGTTCTTGCTTCCATTCTCGAAGAGATTCGCCTCTCCGA
GGAAAAGAGAACGGGGGAGATGAAAAGGCAGCTGCTGGAACAAGACAAAG
ACGGGCTATCGGTTGCCATGCACGCGTGCCTGGGACGCAATTCGGTAGTT
CTTGCTTCCATTCTCGAAGAGATTCGCCTCTCCGAGGCATACCTGGGGCT
GACTGCGCAAGACCACAGCCAGACTACACTTCTCATGCACGCTGCTGGCG
TGGGTAAAGCGGCCGGGTACCAAGCTGTGTTTCACGCTCTGGAGGACGCC
CTCGCGGAAGATAATGCATACCTGGGGCTGACTGCGCAAGACCACAGCCA
GACTACACTTCTCATGCACGCTGCTGGCGTGGGTAAAGCGGCCGGGTACC
AAGCTGTGTTTCACGCTCTGGAGGACGCCCTCGCGGAAGATAATCTGATT
GAGCACATGACAATGAGATCCGGAGACGACCAGACCTTGCTGATGATCGC
GGCGTCATCGGGAGACAAGATGACGTTCAAGGCTCTGATTGAGCACATGA
CAATGAGATCCGGAGACGACCAGACCTTGCTGATGATCGCGGCGTCATCG
GGAGACAAGATGACGTTCAAGGCT
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