mRNA_S-dermatodea_contig12916.1773.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12916.1773.1
Unique NamemRNA_S-dermatodea_contig12916.1773.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12916.1773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12916contigS-dermatodea_contig12916:3777..4329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size543
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.3349657-CDS-S-dermatodea_contig12916:3776..43191622924267.3349657-CDS-S-dermatodea_contig12916:3776..4319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12916 3777..4319 +
1694079137.5903845-CDS-S-dermatodea_contig12916:3776..43191694079137.5903845-CDS-S-dermatodea_contig12916:3776..4319Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12916 3777..4319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.3530471-UTR-S-dermatodea_contig12916:4319..43291622924267.3530471-UTR-S-dermatodea_contig12916:4319..4329Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12916 4320..4329 +
1694079137.6091182-UTR-S-dermatodea_contig12916:4319..43291694079137.6091182-UTR-S-dermatodea_contig12916:4319..4329Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12916 4320..4329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12916.1773.1prot_S-dermatodea_contig12916.1773.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12916 3777..4319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12916.1773.1

>prot_S-dermatodea_contig12916.1773.1 ID=prot_S-dermatodea_contig12916.1773.1|Name=mRNA_S-dermatodea_contig12916.1773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=181bp
SSSAIQAWAPSTVRDGRASFITTTTSTTTFEQRGAKGLQVLRVPRRDALH
SHAQPLLEGLELGLQGRQLFPAPPLFFLQLPSLALREPRQLHRSRVVVAR
EGTRTRHCSRASGVGPSLLYLLGGGLGFGCGSGSGFGFGVYRFCRPLFRL
LGFCLLLLSLLLQLMLRLLSPFVRARSTSR*
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mRNA from alignment at S-dermatodea_contig12916:3777..4329+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12916.1773.1 ID=mRNA_S-dermatodea_contig12916.1773.1|Name=mRNA_S-dermatodea_contig12916.1773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=553bp|location=Sequence derived from alignment at S-dermatodea_contig12916:3777..4329+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCTCTTCCGCGATCCAAGCATGGGCACCGTCAACAGTCCGGGACGGCCG
CGCCTCCTTCATCACCACCACCACCTCCACCACAACTTTTGAGCAGCGCG
GCGCGAAAGGTCTCCAGGTCCTTCGCGTGCCGCGTCGTGACGCTCTTCAT
TCTCACGCGCAGCCTCTGCTTGAGGGCCTCGAGCTCGGCCTCCAGGGGCG
CCAGCTCTTCCCGGCACCGCCTCTTTTCTTCCTGCAACTCCCTTCGCTGG
CACTCCGCGAACCTCGCCAGCTCCACCGTTCGCGCGTGGTCGTCGCTCGA
GAAGGTACCCGCACCCGTCACTGTTCCCGAGCGTCCGGCGTTGGGCCGTC
CCTGCTGTACCTTCTTGGTGGTGGCCTCGGCTTCGGCTGCGGCTCCGGCT
CCGGGTTCGGCTTCGGTGTGTACCGTTTCTGTCGGCCGCTGTTCCGTCTC
CTTGGTTTCTGCTTGCTGCTGCTGTCGTTGTTGTTGCAGTTGATGCTGCG
CCTGCTCTCGCCCTTCGTCCGCGCGCGCAGCACCAGCCGTTGACGCTGCT
GCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12916:3777..4329+

>mRNA_S-dermatodea_contig12916.1773.1 ID=mRNA_S-dermatodea_contig12916.1773.1|Name=mRNA_S-dermatodea_contig12916.1773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at S-dermatodea_contig12916:3777..4329+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCTCTTCCGCGATCCAAGCATGGGCACCGTCAACAGTCCGGGACGGCCG
CGCCTCCTTCATCACCACCACCACCTCCACCACAACTTTTGAGCAGCGCG
GCGCGAAAGGTCTCCAGGTCCTTCGCGTGCCGCGTCGTGACGCTCTTCAT
TCTCACGCGCAGCCTCTGCTTGAGGGCCTCGAGCTCGGCCTCCAGGGGCG
CCAGCTCTTCCCGGCACCGCCTCTTTTCTTCCTGCAACTCCCTTCGCTGG
CACTCCGCGAACCTCGCCAGCTCCACCGTTCGCGCGTGGTCGTCGCTCGA
GAAGGTACCCGCACCCGTCACTGTTCCCGAGCGTCCGGCGTTGGGCCGTC
CCTGCTGTACCTTCTTGGTGGTGGCCTCGGCTTCGGCTGCGGCTCCGGCT
CCGGGTTCGGCTTCGGTGTGTACCGTTTCTGTCGGCCGCTGTTCCGTCTC
CTTGGTTTCTGCTTGCTGCTGCTGTCGTTGTTGTTGCAGTTGATGCTGCG
CCTGCTCTCGCCCTTCGTCCGCGCGCGCAGCACCAGCCGTTGATCCTCTT
CCGCGATCCAAGCATGGGCACCGTCAACAGTCCGGGACGGCCGCGCCTCC
TTCATCACCACCACCACCTCCACCACAACTTTTGAGCAGCGCGGCGCGAA
AGGTCTCCAGGTCCTTCGCGTGCCGCGTCGTGACGCTCTTCATTCTCACG
CGCAGCCTCTGCTTGAGGGCCTCGAGCTCGGCCTCCAGGGGCGCCAGCTC
TTCCCGGCACCGCCTCTTTTCTTCCTGCAACTCCCTTCGCTGGCACTCCG
CGAACCTCGCCAGCTCCACCGTTCGCGCGTGGTCGTCGCTCGAGAAGGTA
CCCGCACCCGTCACTGTTCCCGAGCGTCCGGCGTTGGGCCGTCCCTGCTG
TACCTTCTTGGTGGTGGCCTCGGCTTCGGCTGCGGCTCCGGCTCCGGGTT
CGGCTTCGGTGTGTACCGTTTCTGTCGGCCGCTGTTCCGTCTCCTTGGTT
TCTGCTTGCTGCTGCTGTCGTTGTTGTTGCAGTTGATGCTGCGCCTGCTC
TCGCCCTTCGTCCGCGCGCGCAGCACCAGCCGTTGA
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