mRNA_S-dermatodea_contig9716.17718.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9716.17718.1
Unique NamemRNA_S-dermatodea_contig9716.17718.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9716.17718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9716contigS-dermatodea_contig9716:4198..6859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925427.6953194-CDS-S-dermatodea_contig9716:4199..42681622925427.6953194-CDS-S-dermatodea_contig9716:4199..4268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9716 4200..4268 -
1694079926.4631135-CDS-S-dermatodea_contig9716:4199..42681694079926.4631135-CDS-S-dermatodea_contig9716:4199..4268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9716 4200..4268 -
1622925427.7121649-CDS-S-dermatodea_contig9716:6538..68591622925427.7121649-CDS-S-dermatodea_contig9716:6538..6859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9716 6539..6859 -
1694079926.4730232-CDS-S-dermatodea_contig9716:6538..68591694079926.4730232-CDS-S-dermatodea_contig9716:6538..6859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9716 6539..6859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9716.17718.1prot_S-dermatodea_contig9716.17718.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9716 4200..6859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9716.17718.1

>prot_S-dermatodea_contig9716.17718.1 ID=prot_S-dermatodea_contig9716.17718.1|Name=mRNA_S-dermatodea_contig9716.17718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
ASSSPGRLAAHRRASGVNMQHSVVRNIEASTPSLREQAEDRRQRVKFSGW
CLICLLGLLGVYRVMYSTVGDVLGLVAGMSASPRGVGGVSMAERFGKDMG
SLIASTKLLSLTGEATAGLESWRSTLATGG
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mRNA from alignment at S-dermatodea_contig9716:4198..6859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9716.17718.1 ID=mRNA_S-dermatodea_contig9716.17718.1|Name=mRNA_S-dermatodea_contig9716.17718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2662bp|location=Sequence derived from alignment at S-dermatodea_contig9716:4198..6859- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAGCTCTTCGCCGGGGCGCCTGGCCGCACATCGGCGAGCCAGCGGCGT
CAACATGCAGCACTCCGTGGTGCGGAATATCGAGGCATCAACGCCTTCCC
TGCGGGAGCAGGCGGAAGACCGCAGGCAGCGGGTCAAGTTCTCCGGCTGG
TGCTTGATCTGCCTCCTGGGACTGTTAGGGGTCTACCGCGTGATGTACTC
GACGGTAGGAGACGTGCTCGGTTTGGTTGCCGGGATGTCCGCCTCGCCGC
GCGGGGTGGGAGGGGTAAGCATGGCGGAGCGATTCGGGAAGGACATGGGC
TCTTTGATCGCTTCCACGAAGGTAGGTGCTGGCTCTGCCTGTTCTCGCGT
CGATCAAACGGCCTGCCTGAGAGGATTGAGGATTCGAATTGCTTTGTGTG
TTGTTCAAGTGATGGAACGAAGAGGACTTGAGATATAGATGGATCCACTC
TGGTCGTACGAGCTCAGCTGTGTCTGCTGTGACGGGCTATTAGACAGCGC
TGTACGGCTGTAGTGGCTGTACGGCTGCAGTGTGGTGTGTACAGCAGTGG
TAATGGCTGGGGTTTATCGAAAAGCAGCCAGTGTGGACAAGTGCGAAGAA
GTATCGCTGTGATACATACTCTGTACTCTGTACTCCTGAATCATATATAG
CTTACATCTCAGATCAAAAGCATCAAAATCAAATCAGAAATCAGAAGTCG
CATGCCCTTCACTTCACTCCAAATGAAAACACAAGTCCCGTTTTGGTATG
CGTTTTGGTCATTCAAAATCATATTATGAGCACAACGTGAGCAGTTATTG
TGTAGTATGAATTACTATTATACTACAGCAGTGTATCATACTCTGTGTAG
CAATGCAGCGCCACGCGACAAAATCACGCAAGCACGTTGATAACCATCAG
GCACAGCAAGGAGATCGGGTGCAGGCAACCTGCACACACAAAGTGCAGAA
ACTGTTTCCTCGCCCCTCTTTCGGGTTTGTTCTATATAAATAGCTGCTAG
GAATGTCCCCCGGCTCTATTTTTTGGAACCGGGTACCTGGCAGCATTTTG
GGGGGTGGACCCGGAATCGGACCGGGTACCCGGCGGGTATTTGGACCCCG
GGTACCCGGGTACACCCGTCGTTTTCGAAGTACGGCGCCCCTGTTCACTT
GGGTACCCCTATGATCAGCACACACGGTGCCTTGATTTTGTCTTGAGGCA
AGAATCATGACAAAGAAAGAAGCAGGGCCCGCCTTTCACGAGATATCGTA
TTATTTAATGAAACAATGAGCGATTGGGTATATTGATTTTAGACAAGGAT
GCTGTCTGATGCCAAACAACTTGATGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTACCCGGAATTGGACCGGGTACCCGGCGGGTA
TTTGGACCCCGGGTACCCGGGTACACCCATCGTTTTCGAAGTACGGCGCC
CCTATTCACTTGGGTACCCCTATGATCAGCACACACGGTGCCTTGATTTT
GTCTTGAGGCAAGAATCATGACAAAGAAAGAAGGCAGGGCCCGCCTTTCA
CGAGATATCGTATTAATTAATAAAACAATGAGCGATTGGGTATATTGATT
TTAGACAAGGATGCTGTCTGATGCCAAACAACTTGATGTTGTTGTTGTTG
TTGTTGTTGTTGTAACCGCGTTCCGTCGACATATCGTCCTGCCAAATGAA
AACACCTCACACGGGCGTAGCCGTGGCTACCCACTAGTGAATGGATATTA
CTGTACTAAGGTTACCGTTATAGGGCTGCCGTGTTTCGTAAAGACGGGTA
CCCGGACCCAAATAGGTTCAGAGGGGCGCCGTGTGTGCTGGTCATAGGGG
TACCTGCGTGTATAGGGGCGCCGTATTTCGAAAACGACGGGGTCCAAATA
CCCGCGGTTCCATGGGTTGGAACCGGACCCGTCCGGTTCCAGACGGTTCC
GGGTATGAGCTCCCCCTCGGGTACCCGGTTCTGAGTCAGCCGGGGGACAC
CTCTAGTTCGTTCTCCGTACCGATATCGAAATCACATTATCGCGTTATGA
TATCATAGCAACTCCCCCTTTTCTTTGCGATCTTCGCGAGTTGACTGAAT
GAAGCAGATGCTGGCCCATGTACTACTGTTTGTGGTGGACATACCGTCAT
ATAGCTCTACTGTTTTACCGCTACAGTATCTGTACAAGTGTCATATGATG
TGCACTCACCATTGAGAAAGACGAGCTCTGAGCTGTGTGCCTTGTACATA
TCACTTGACAAGTAAAAACTACCATATGTAACGCTCGCTGTGCCCAACGC
CGTAGAGGCATGATACATGTACTCGTAGAGTTACAAGATATGTATTGCTT
GTCTGTATCATAGAGCCGTAGAGCCCCATTTATTACTTAACCAACTGAAT
CAAATCAAAGCCTTCTCCATCCGCACGCACTTGTCTTTCCAGACAAACAA
TACACCAGTAAACACATACATACCCCAACATCCCCTCCTACCTACCCCCC
CCCCCCCCCCCTCCCCCCCCCCCCCCCCACCTCCGGGCTGCTATTTTTAT
CGCCACCAACAACCACGCACGCTGTCCACGCCCAACGACAGCTGCTGTCC
CTTACGGGCGAGGCAACCGCGGGCCTGGAGTCGTGGCGCAGCACCCTCGC
GACGGGTGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9716:4198..6859-

>mRNA_S-dermatodea_contig9716.17718.1 ID=mRNA_S-dermatodea_contig9716.17718.1|Name=mRNA_S-dermatodea_contig9716.17718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig9716:4198..6859- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAGCTCTTCGCCGGGGCGCCTGGCCGCACATCGGCGAGCCAGCGGCGT
CAACATGCAGCACTCCGTGGTGCGGAATATCGAGGCATCAACGCCTTCCC
TGCGGGAGCAGGCGGAAGACCGCAGGCAGCGGGTCAAGTTCTCCGGCTGG
TGCTTGATCTGCCTCCTGGGACTGTTAGGGGTCTACCGCGTGATGTACTC
GACGGTAGGAGACGTGCTCGGTTTGGTTGCCGGGATGTCCGCCTCGCCGC
GCGGGGTGGGAGGGGTAAGCATGGCGGAGCGATTCGGGAAGGACATGGGC
TCTTTGATCGCTTCCACGAAGGCCAGCTCTTCGCCGGGGCGCCTGGCCGC
ACATCGGCGAGCCAGCGGCGTCAACATGCAGCACTCCGTGGTGCGGAATA
TCGAGGCATCAACGCCTTCCCTGCGGGAGCAGGCGGAAGACCGCAGGCAG
CGGGTCAAGTTCTCCGGCTGGTGCTTGATCTGCCTCCTGGGACTGTTAGG
GGTCTACCGCGTGATGTACTCGACGGTAGGAGACGTGCTCGGTTTGGTTG
CCGGGATGTCCGCCTCGCCGCGCGGGGTGGGAGGGGTAAGCATGGCGGAG
CGATTCGGGAAGGACATGGGCTCTTTGATCGCTTCCACGAAGCTGCTGTC
CCTTACGGGCGAGGCAACCGCGGGCCTGGAGTCGTGGCGCAGCACCCTCG
CGACGGGTGGGCTGCTGTCCCTTACGGGCGAGGCAACCGCGGGCCTGGAG
TCGTGGCGCAGCACCCTCGCGACGGGTGGG
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