mRNA_S-dermatodea_contig12915.1772.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12915.1772.1
Unique NamemRNA_S-dermatodea_contig12915.1772.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 3.790e-49
Identity = 113/299 (37.79%), Postives = 159/299 (53.18%), Query Frame = 2 
Query:   47 EYVGCFADSKAARLMGDLVV-QADMTSEVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGI-CHMRCSGDDTTACGGYDAFSLFEMSTMEDGSGDAQPTTTPSLIDSQESESSDPTXXXXXXXXXXXXXXXXXXXXDNVPAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGTIFHSDNS----YGENLYLCGSTGEASCYTAEGAMEALYTDELT-GNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGNSPATE---QNVELP 913
            EY+GCF DS+  R++ D++  + DM++E C +HCM  G  + ATQ+  EC+C +++    Y+RHG G  C M C+G +   CGG  AF L+++     GS D  P+                                  XXX     + AGLL+LHNEARC+H+ADPL W      +A ++A  LT+     ++FHS       YGENL++C  T   +CY  + AME LY +E+   +V  Y GHAT ILWK+T+ VGC +  C +G   Y  LVC +DPAGN    +   Q V LP
Sbjct:   57 EYIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFC-SNNKDLEYDRHGSGAECDMSCTGVEGETCGGNHAFDLYKLG----GSADNPPS----------------------------------XXXXXXXDDMAGLLDLHNEARCVHSADPLGWSDPVTSSAAEHAVRLTDQCTS-SLFHSTREQRYGYGENLFVCWGTD--TCYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEVGLP 313
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 2.190e-43
Identity = 108/306 (35.29%), Postives = 149/306 (48.69%), Query Frame = 2 
Query:   47 EYVGCFADSKA---ARLMGDLVVQADMTSEVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFEMSTMEDGSGDAQPTTTPSLIDSQESESSDPTXXXXXXXXXXXXXXXXXXXXDNVPAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGTIFHSD---NSYGENLYLCGSTGEASCYTAEGAMEALYTDELT-GNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGN---SPATEQNVELPSKTEAEC 934
            EY+ C+AD       R M D     +MT E+C +HC + G  F   Q+G EC+CGT      + ++G G C   C GDD   CGG+ +F L+ +   E G  DA      S+ DS E +                                  LL+LHNEARC+H A+PL WD    +TA+ +A  LT+  NCG +F SD   + YGENLYLC   G A C   +G ++ +Y   +  G V  Y   A  +LW +T ++GCA+ +C         LVCN+DP G+     A E  V LP ++E EC
Sbjct:  136 EYIDCYADEGEEGQGRAMDDGFRSNEMTPELCYEHCSSNGYDFMGLQYGRECYCGTEEEEKRHVQYGPGTCDHPCKGDDNLVCGGFWSFDLYYIG--ETGPADAGD----SVDDSSEKQV---------------------------------LLDLHNEARCVHGAEPLAWDETMEETARGHAEELTSRQNCGYLFWSDVTAHGYGENLYLC--YGAADCMMYDGVLDTMYDYAVDDGPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLPEQSEEEC 400
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.530e-40
Identity = 100/281 (35.59%), Postives = 139/281 (49.47%), Query Frame = 2 
Query:  113 DMTSEVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFEMSTMEDGSGDAQPTTTPSLIDSQESESSDPTXXXXXXXXXXXXXXXXXXXXDNVPAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGTIFHSD---NSYGENLYLCGSTGEASCYTAEGAMEALYTDELT-GNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGN---SPATEQNVELPSKTEAEC 934
            +MT E+C +HC + G  F   Q+G EC+CGT      + ++G G C   C GDD   CGG+ +F L+ +   E G  DA      S+ DS E +                                  LL+LHNEARC+H A+PL WD    +TA+ +A  LT+  NCG +F SD   + YGENLYLC   G A C   +G ++ +Y   +  G V  Y   A  +LW +T ++GCA+ +C         LVCN+DP G+     A E  V LP ++E EC
Sbjct:    9 EMTPELCYEHCSSNGYDFMGLQYGRECYCGTEEEEKRHVQYGPGTCDHPCKGDDNLVCGGFWSFDLYYIG--ETGPADAGD----SVDDSSEKQV---------------------------------LLDLHNEARCVHGAEPLAWDETMEETARGHAEELTSRQNCGYLFWSDVTAHGYGENLYLC--YGAADCMMYDGVLDTMYDYAVDDGPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLPEQSEEEC 248
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.070e-39
Identity = 98/277 (35.38%), Postives = 137/277 (49.46%), Query Frame = 2 
Query:  125 EVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFEMSTMEDGSGDAQPTTTPSLIDSQESESSDPTXXXXXXXXXXXXXXXXXXXXDNVPAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGTIFHSD---NSYGENLYLCGSTGEASCYTAEGAMEALYTDELT-GNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGN---SPATEQNVELPSKTEAEC 934
            ++C +HC + G  F   Q+G EC+CGT      + ++G G C   C GDD   CGG+ +F L+ +   E G  DA      S+ DS E +                                  LL+LHNEARC+H A+PL WD    +TA+D+A  LT+  NCG +F SD   + YGENLYLC   G A C   +G ++ +Y   +  G V  Y   A  +LW +T ++GCA+ +C         LVCN+DP G+     A E  V LP ++E EC
Sbjct:   33 QLCYEHCSSNGYDFMGLQYGRECYCGTEEEEKRHVQYGPGTCDHPCKGDDNLVCGGFWSFDLYYIG--ETGPADAGD----SVDDSSEKQV---------------------------------LLDLHNEARCVHGAEPLAWDETMEETARDHAEELTSRQNCGYLFWSDVTAHGYGENLYLC--YGAADCMMYDGVLDTMYDYAVDDGPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLPEQSEEEC 268
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.970e-36
Identity = 73/136 (53.68%), Postives = 95/136 (69.85%), Query Frame = 2 
Query:    2 FDLYKMEWAPASTDSEYVGCFADSKAARLMGDLVVQADMTSEVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFEMSTMEDGSGDAQPTTTPSLIDSQESESSDPT 409
            F+LY++ WAPA  D EYVGC+ D+K  R++ D++   DMT+ VCR+HC  K   +Y TQF  ECWCGTS   ++YERHGEG+CHM CSGD T ACGGYDA+SLF+     D  G+A PTT P + DS ++ +  PT
Sbjct: 1232 FNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKY----DNGGEA-PTTAP-VTDSPDTPTMAPT 1361
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.790e-35
Identity = 92/261 (35.25%), Postives = 129/261 (49.43%), Query Frame = 2 
Query:  164 FYATQFGDECWCGTSSMRSNYERHGE----GICHMRCSG----DDTTACGGYDAFSLFEMSTMEDGSGDAQPTTTPSLIDSQESESSDPTXXXXXXXXXXXXXXXXXXXXDNVPAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGTIFHSDNS----YGENLYLCGSTGEASCYTAEGAMEALYTDELT-GNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGNSPATEQNVE 907
            + ATQ+  EC+C + +    Y+RH E      C+M CSG    +    CGG  AF L+++       G  + + +PS                                    P +  GLL+LHNEARC+H ADPL W      +A ++AA LT+     ++FHS       YGENL++C  T   +CY  E AME LY +E+  G V  Y GHAT ILWK+T++VGC +  C +G   Y  LVC +DPAGN    ++ +E
Sbjct:    7 YMATQWAVECFC-SKNKDLKYDRHEEHESAAECNMMCSGGAEEETEETCGGDHAFDLYKIG------GSTENSPSPS------------------------------------PDDMTGLLDLHNEARCVHGADPLGWSDPVTSSAAEHAARLTDQCTS-SLFHSTTDQRYGYGENLFMCWGTD--TCYNHEYAMEKLYVEEVQFGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDPAGNMGGDKEYIE 221
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.060e-34
Identity = 63/105 (60.00%), Postives = 80/105 (76.19%), Query Frame = 2 
Query:    2 FDLYKMEWAPASTDSEYVGCFADSKAARLMGDLVVQADMTSEVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFE 316
            F+LY++ WAPA  D EYVGC+ADSK  R++ D++   +MT+ VCR+HC  K   +Y TQF  ECWCGTS   ++YERHGEG+CHM CSGD T ACGGYDA+SLF+
Sbjct:  886 FNLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 990
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.240e-32
Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = 2 
Query:  479 PAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGT-IFHSDNS----YGENLYLCGSTGEASCYTAEGAMEALYTDEL-TGNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGNSPAT-EQNVELP 913
            PA+   L++LHNEARC+HNADPL W S    +A ++A  LT  A C + +FHS       YGENLY+C   G  SCY+ E AME LY DE+ + +V  YGGHAT ILWK+TE+VGC V  C +G   Y  LVC +DP GN     E+ V LP
Sbjct:  238 PADMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLT--AQCSSNLFHSTQEQRYGYGENLYMC--WGSDSCYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYGGQYEEQVGLP 385
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.010e-31
Identity = 77/151 (50.99%), Postives = 94/151 (62.25%), Query Frame = 2 
Query:  482 AEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANCGT-IFHSDNS----YGENLYLCGSTGEASCYTAEGAMEALYTDELT-GNVNSYGGHATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGNSPAT-EQNVELP 913
            A+   L++LHNEARC+HNADPL W S    +A ++A  LT  A C + +FHS       YGENLY+C   G  SCY+ E AME LY DE+   +V  YGGHAT ILWKATE+VGC V  C +G   Y  LVC +DP GN     E+ V LP
Sbjct:  340 ADMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLT--AQCSSSLFHSTQEQRYGYGENLYMC--WGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPPGNYGGQYEEQVGLP 486
[Close]
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.400e-27
Identity = 59/107 (55.14%), Postives = 73/107 (68.22%), Query Frame = 2 
Query:    2 FDLYKMEWAPASTDSEYVGCFADSKAARLMGDLV-VQADMTSEVCRDHCMTKGTVFYATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFEM 319
            FDLYK+      T  EYVGCFAD +  RL+GD + +Q DMT  VCR +C  +   FYATQ+GDECWCG S+   +Y+RHG G C   CSGD T ACGG+DAF+LF+ 
Sbjct:  518 FDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF 624
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12915.1772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW7_ECTSI3.790e-4937.79Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
D7G7J6_ECTSI2.190e-4335.29Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
D8LED1_ECTSI1.530e-4035.59PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D8LED3_ECTSI1.070e-3935.38WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
D7FRE8_ECTSI5.970e-3653.68EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KK50_9PHAE1.790e-3535.25SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJ37_9PHAE1.060e-3460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZI7_9PHAE1.240e-3250.66SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJX3_ECTSI4.010e-3150.99Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
D8LED7_ECTSI1.400e-2755.14EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12915contigS-dermatodea_contig12915:1530..6660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue5e-40
Seed eggNOG ortholog2880.D8LED1
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
Ec32 ortholog descriptionPR1-like metalloprotease
Ec32 orthologEc-00_010390.2
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2499
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12915.1772.1prot_S-dermatodea_contig12915.1772.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12915 3086..6644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.169792-UTR-S-dermatodea_contig12915:1529..30851622924267.169792-UTR-S-dermatodea_contig12915:1529..3085Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12915 1530..3085 -
1694079137.47321-UTR-S-dermatodea_contig12915:1529..30851694079137.47321-UTR-S-dermatodea_contig12915:1529..3085Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12915 1530..3085 -
1622924267.2438965-UTR-S-dermatodea_contig12915:6644..66601622924267.2438965-UTR-S-dermatodea_contig12915:6644..6660Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12915 6645..6660 -
1694079137.5569851-UTR-S-dermatodea_contig12915:6644..66601694079137.5569851-UTR-S-dermatodea_contig12915:6644..6660Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12915 6645..6660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.1833246-CDS-S-dermatodea_contig12915:3085..31551622924267.1833246-CDS-S-dermatodea_contig12915:3085..3155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 3086..3155 -
1694079137.4879663-CDS-S-dermatodea_contig12915:3085..31551694079137.4879663-CDS-S-dermatodea_contig12915:3085..3155Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 3086..3155 -
1622924267.1947904-CDS-S-dermatodea_contig12915:3743..38941622924267.1947904-CDS-S-dermatodea_contig12915:3743..3894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 3744..3894 -
1694079137.4970675-CDS-S-dermatodea_contig12915:3743..38941694079137.4970675-CDS-S-dermatodea_contig12915:3743..3894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 3744..3894 -
1622924267.2041671-CDS-S-dermatodea_contig12915:4174..43161622924267.2041671-CDS-S-dermatodea_contig12915:4174..4316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 4175..4316 -
1694079137.5140982-CDS-S-dermatodea_contig12915:4174..43161694079137.5140982-CDS-S-dermatodea_contig12915:4174..4316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 4175..4316 -
1622924267.2150838-CDS-S-dermatodea_contig12915:4827..51201622924267.2150838-CDS-S-dermatodea_contig12915:4827..5120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 4828..5120 -
1694079137.52815-CDS-S-dermatodea_contig12915:4827..51201694079137.52815-CDS-S-dermatodea_contig12915:4827..5120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 4828..5120 -
1622924267.2236528-CDS-S-dermatodea_contig12915:5776..58851622924267.2236528-CDS-S-dermatodea_contig12915:5776..5885Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 5777..5885 -
1694079137.5381234-CDS-S-dermatodea_contig12915:5776..58851694079137.5381234-CDS-S-dermatodea_contig12915:5776..5885Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 5777..5885 -
1622924267.2322974-CDS-S-dermatodea_contig12915:6482..66441622924267.2322974-CDS-S-dermatodea_contig12915:6482..6644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 6483..6644 -
1694079137.5475438-CDS-S-dermatodea_contig12915:6482..66441694079137.5475438-CDS-S-dermatodea_contig12915:6482..6644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12915 6483..6644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12915.1772.1

>prot_S-dermatodea_contig12915.1772.1 ID=prot_S-dermatodea_contig12915.1772.1|Name=mRNA_S-dermatodea_contig12915.1772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=309bp
MEWAPASTDSEYVGCFADSKAARLMGDLVVQADMTSEVCRDHCMTKGTVF
YATQFGDECWCGTSSMRSNYERHGEGICHMRCSGDDTTACGGYDAFSLFE
MSTMEDGSGDAQPTTTPSLIDSQESESSDPTPSPVAQRRQPTPASGGGGG
GDNVPAEYAGLLELHNEARCMHNADPLEWDSDAFKTAQDYAAVLTNSANC
GTIFHSDNSYGENLYLCGSTGEASCYTAEGAMEALYTDELTGNVNSYGGH
ATAILWKATERVGCAVDTCESGDFKYHTLVCNFDPAGNSPATEQNVELPS
KTEAECAL*
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mRNA from alignment at S-dermatodea_contig12915:1530..6660-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12915.1772.1 ID=mRNA_S-dermatodea_contig12915.1772.1|Name=mRNA_S-dermatodea_contig12915.1772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5131bp|location=Sequence derived from alignment at S-dermatodea_contig12915:1530..6660- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCGACCTCTACAAAATGGAGTGGGCTCCGGCATCGACTGACTCCGAGT
ACGTTGGGTGCTTCGCGGACTCGAAGGCTGCACGCCTTATGGGCGACCTG
GTGGTCCAAGCGGACATGACCTCTGAGGTTTGCCGCGACCACTGCATGAC
GAAGGGCACCGTGTTCTACGCCACGCAGGTTCGTTTGACAGCGCGTATGA
TTAGCGCGTTTGTGTATCGTAGACAAGCTGTGCTTTGTGTGTGTGTGTGT
GTATTTTTTTGTTGCACACGTTGAGCCTACAAAAGTAGTCGATCGGCTTT
TAATCCGACCCGACTATCTATTGTCAGATATGCTTTCGCAAAGAATCAAG
GAGAAAATAACTAAATCAAAAGTTACTTCTACAACACAACAAATACCACC
CCTTGTTTTCAATAATTGTACAATACTTGTACAGAATATAGCATGTGTTG
CGCAGCGCCGCCGTGCTCTCATGTGTCCCCGATGCAGCGCAATCAGCTGC
GACTTGTACTTGTATGTACGCTTTGCGAAAGCAGAGGGGGGCTTTCATCC
AGCTAAAGACCGTTTCGCATGCGAGGCGAGAACCATTGATCGCACCCCCA
AACCAAGCAAGCTATATTGACCTCTACACAACTGCAGTAGTATCATAGTG
GTTCGTCAATCAATCTGTCAGTGACAGCGATTCATCGTCTTGCCCCTCGG
GTGGATTCGCTCTCATCAAATAACACCCGTTACCCTACGTATTTGTGAAC
ACTCTTTCTTGGCCTGTCTTCTCAGTTCGGCGACGAGTGCTGGTGCGGAA
CTTCGTCGATGAGGTCGAACTACGAGAGGCACGGTGAAGGTATCTGCCAC
ATGCGCTGCTCCGGAGACGACACCACGGCTTGCGGTGAGTACTGCTCGTT
CTGAATAAGAAACCGCATGCACCTGAAGACAAGAGATGACGTCAGCCGTT
GACCAGCAAAATGTTCGGCCAATTCTTTTTTTCGGCCAAGCTTTTTTTCG
TCCAATATCCCCTTTTTCCTTGCGTCTGCTAAACACCCGCCCCCCCCCCC
ACCCCCCCACCCCCCCCCCACCCCCCCAACCAACGACCTCTCGTGGCAAA
CGCAGGAGGAACANNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCTTTCTTTTTTTTTTTTTGTTTTTTTTTATCCCCCCCCCCCC
CCCCCCCCCCCCATAATTTGGCGTCGTAAACGCAAGGATGATGGATAGCA
GGTAATATTGAGCTCTTTTGTCATCCTTGTGAAACACAGCCTGGCCGGCG
AACCGAAAACCCGACATATCGCTCCGTCCTTCCCGGCATTGTTGGCACGC
GTGGTCTTTTGTCCGTTTGGATACGACATGCGTTTAACATATGTTCATAA
AACCCGCACCCCCCTCCCAACCTCCCAATGCTCCGTCCTCCCGAGGACGC
GTGGTCACAGCAGGCCTATGCGTAACAGCTAAGAAGGAATGCAAAAATTG
ACCACGCCCTCCCCCCCCCCCCCTCCTTACCCCTCAACAGGCGGATACGA
CGCATTCAGCCTGTTCGAGATGTCCACCATGGAAGACGGTTCCGGCGACG
CGCAACCGACCACCACGCCCAGCTTAATCGACTCCCAGGAGTCCGAATCC
AGCGACCCCACCCCCTCGCCGGTTGCCCAGCGCCGGCAGCCCACCCCAGC
GTCTGGTGGGGGGGGAGGAGGAGACAACGTCCCGGCGGAATACGCCGGTC
TGCTGGAACTCCACAACGAGGCCCGTTGTATGCACAACGCGGACCCTCTG
GAGTGGGACTCCGACGCGTTCAAGACTGCCCAGGTGAGGCGTTTTTGATG
TTTTGCTGTTTTTGTCGTACCCGCGTCTACGGAAAGCTTGGAGTGTGTGG
GAAGCAGAATGCGTGTCCCCCCCCCCCCCCCAAAAAAAGTTTTCAAAGAC
TTGGCGCGAGCGTTGGGGGCCCACCTCCACCACCTTAGACTTGCTTCTAT
ACCTTCTGTGCGGCGTTCACTTGCTGCGCCACTCCCCCGAGCTCGTCTAT
CGTGGTTCGGCCCGAGGCGGTAGGGTCGTTTTCCCTGAAAATGCGGGTTC
CTGGTCTACTCCGATCGCCGTGTGATGAGAGCTCGAAGCTAGGAACGAAC
GAAGGGACCTTGCTTCGTGAAACGCGGCCTGGCCGGCGAAACCCCGGCAA
ATCGCTCCGTCCCTCCCGGCATTGTTGGAACGTGTGTTCTTTATACGTAT
GGATACGACATGCGTTTTAACATAAGTACCCCCCCCTCCCCCCCCCCGGC
CCGTTTCGTTAACTTTTCCGTGAATGCGACCATGCGACCGACAGGACTAC
GCGGCGGTTTTGACGAACAGCGCGAACTGCGGCACCATTTTCCACTCCGA
CAACAGCTACGGAGAGAACCTGTACTTGTGTGGCTCCACCGGGGAGGCCA
GCTGCTACACCGCCGAAGGAGCCATGGAGGCCCTCTGTGAGTGCATCAAG
TTTTTTGCTTTCTGTTCTTTTTGGTATGATTCTATCGAAGTATGATACTA
AGCTAAGCTTTCGGGACTGACTCGAGTCTGTTTTCTGCCTCGCACAAGAA
GAGCCAAACATACGACAGCACTTGGGGAGCCATTCGCCTGGTCCATATGC
CGTACATGAATGGGCATACTGTAACTTATCCGCCCCTCCATAAGCTGGTG
TTTTGGTTCTCACTCGCGCCTCTTTCCCCCGTCTCGTTTCCTCCGCCGAT
GTTCGATTCTTCCCAGACACTGATGAACTCACCGGCAACGTGAACTCGTA
TGGAGGACACGCGACGGCTATCCTGTGGAAGGCCACCGAGAGAGTGGGAT
GCGCGGTGGACACGTGCGAGTCCGGCGACTTCAAATACCACACGCTCGTT
TGCAACTTCGACCCTGCGTGAGTTGTTGTTTGTCGCACGAAATGCTTGTT
TTTTTAAGCGCCAAGTCTTGGGGGGGGCATAAGAAGTGTTGTGTAAAAAA
CACGCGAAGACTCAGCTCTCTCGCTTCTCGTTGGCACGAAATAAAGTCAT
CATTCAGTGTACTAAATAGTGTACTGTACGCGTAGTGTAATGTCTATAAA
GGTGTATTGGTGTATTGGCTGTGTGTTGATTTGTGGATTGGTTTGATTGA
TTTATTTAATTGATTGAGTGAGCGTTGATTGAATAAATGATTTATTGGTG
TAATTGATTGATTTTGTTTTTATTTGGTTGATTGATCGATTGGTTGGTTT
AATAACTGAACGATTGATTGATTGAGTGATTGATTGATTGACTGGTTTTA
TTAATTCATTTACCACACTTACGACCGACCGGCCCGTCAATGTCGTCACC
GATCCCACTCGAGGTCAGACTAGAAATAGATTAAAAAAAAAAGCACACAC
ACACACACAATTACACACGGAACTTTGTCCTCACATACCCTGATTCCCCC
TTCCCGCGCTCCTCTGCTGCCTTCCGTTTTATTTTGCGCGTGCCTGCTTC
TTCAGTGGAAACAGCCCCGCCACGGAGCAAAACGTTGAGCTTCCTTCCAA
GACCGAAGCAGAGTGCGCCCTCTAGAGCAACTCGAATATCAGCCCGTAGC
CTTTTTCCTATAATGTACCGTCTATTATTTTTAGTGGGTATCCTTCCACC
GTGAACACCTCTTTTGTTGCAGATCGGAATTTTGCCAAGAGTCCGTTTTC
GCATGTGTTATGTGTTATGTGGAGAGGGTGGTAGTTCGTCGTGGTAAACG
ATGAGAGACCGTCCGCACACTGTCACATGGAGGCGTACATTTGTGTTGTG
TTTTGTTGTTGTAATTGCGATTAATTTTGGGTGGTATATCCGGGAACGTC
TCTGCTGTGCCGGCTGGGTCTGATTGTATCGGTGTCATCGGCTTAGTTGC
TGGGTTGGTTCTCTTGGTGTGTCCCTTCCCCTGCGCTGCGCCCAACAGAG
CGAAACCCAAGAGTCAAGTGTGGTTGCGGAGATGGATGCCGCTGTGAGTG
GCTAGCGCACTGGAGCTTTGTCGTGTTGTTCATCGCCGTGGAAGGAAGTG
TCCCCTTCACGTTCTTGCGAGGCTAGTTTTGCAGCGGCGTTAGGGGGGTG
CGGGCGGTGCCTTTTGTGTTTTGTATTCCTCTGGCGTGTTTTGAGAAGAA
GGGTGAGTTTGTTTTGTGTGTGGGGCGTCTCTGCACGTTGCTACTTTCCC
TTGCGTGCTTGCTCCTTTCACACACGAGTGTGTGGTGATATATGATGCAT
AGTTTCCTTTGCGCACATTCATTTATGTTTTTGTTGACACGGATAATAAA
GAGATACGAGTGAATGTGTGTATCAGTATACGACTGACTACCATGCATGT
AGCCAGCGTAGACCGTCGGTTTGAGCCATCGTAGAGGTGTGCGTCCATGA
TATACACATGGTCATAATATGTGTCATCCTTCTTCCGTAGCCCATCGTGC
CTGCCTGTCTCTCCATCTATTCGTTCTCTGTTTCAGCCTTTTTTATTTGT
TTTTTTTTGTTCCACAGGAAATAATTAGAGGAGTGCCGGTTTATGTGCTA
CAGATTAGGTAGTGCGATGTTCGACCATCGTTTTGTTTGGTTCTGCGTCT
TTTACGACCACGAAAAGGCAGCGAATGCGCCGCTCGTTCCGCTTTAGGAA
GACGGTGGATTGGATTGAATTTGAGGTTCGTCTTCTTTTACGATCCGAGC
GCACTACCGAGTTGTGCTGCTGTTGCGGGTTTTCTTTTGTAATAAGGCTT
TTAAATTTTTGTCGGTTCACGAATTCTTCACGGAAGGAAGGAAAATTAAT
ATTGGTTGCAACATTTATCAATTTATCAATCCAGATGGTCATGATTCGCC
ACCCAATGGGCGGACGGAACAATATCGTAGCAGCCATAGCAGCTGCAGGT
AGTCAAGTCAGGATGTATTTCCTCTTGCTTGCGCAGTGTAGGGCCGAGGG
GGGCGTGTTGGCCATTATAAGCAATCAATCGTGTCCTCTTCCTTCTGCTG
AAGGAATATATACACTAATTCAGCTTGAACTTCCTCGTAAATTCCTGGAC
GCTATAATGATTCATACGTGCAATCAATGTCTGCTGCTTGCTGCTTGTTG
GAGTACGAAGCGCCTTGATTGAAACATGCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12915:1530..6660-

>mRNA_S-dermatodea_contig12915.1772.1 ID=mRNA_S-dermatodea_contig12915.1772.1|Name=mRNA_S-dermatodea_contig12915.1772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at S-dermatodea_contig12915:1530..6660- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTGGGCTCCGGCATCGACTGACTCCGAGTACGTTGGGTGCTTCGC
GGACTCGAAGGCTGCACGCCTTATGGGCGACCTGGTGGTCCAAGCGGACA
TGACCTCTGAGGTTTGCCGCGACCACTGCATGACGAAGGGCACCGTGTTC
TACGCCACGCAGATGGAGTGGGCTCCGGCATCGACTGACTCCGAGTACGT
TGGGTGCTTCGCGGACTCGAAGGCTGCACGCCTTATGGGCGACCTGGTGG
TCCAAGCGGACATGACCTCTGAGGTTTGCCGCGACCACTGCATGACGAAG
GGCACCGTGTTCTACGCCACGCAGTTCGGCGACGAGTGCTGGTGCGGAAC
TTCGTCGATGAGGTCGAACTACGAGAGGCACGGTGAAGGTATCTGCCACA
TGCGCTGCTCCGGAGACGACACCACGGCTTGCGTTCGGCGACGAGTGCTG
GTGCGGAACTTCGTCGATGAGGTCGAACTACGAGAGGCACGGTGAAGGTA
TCTGCCACATGCGCTGCTCCGGAGACGACACCACGGCTTGCGGCGGATAC
GACGCATTCAGCCTGTTCGAGATGTCCACCATGGAAGACGGTTCCGGCGA
CGCGCAACCGACCACCACGCCCAGCTTAATCGACTCCCAGGAGTCCGAAT
CCAGCGACCCCACCCCCTCGCCGGTTGCCCAGCGCCGGCAGCCCACCCCA
GCGTCTGGTGGGGGGGGAGGAGGAGACAACGTCCCGGCGGAATACGCCGG
TCTGCTGGAACTCCACAACGAGGCCCGTTGTATGCACAACGCGGACCCTC
TGGAGTGGGACTCCGACGCGTTCAAGACTGCCCAGGCGGATACGACGCAT
TCAGCCTGTTCGAGATGTCCACCATGGAAGACGGTTCCGGCGACGCGCAA
CCGACCACCACGCCCAGCTTAATCGACTCCCAGGAGTCCGAATCCAGCGA
CCCCACCCCCTCGCCGGTTGCCCAGCGCCGGCAGCCCACCCCAGCGTCTG
GTGGGGGGGGAGGAGGAGACAACGTCCCGGCGGAATACGCCGGTCTGCTG
GAACTCCACAACGAGGCCCGTTGTATGCACAACGCGGACCCTCTGGAGTG
GGACTCCGACGCGTTCAAGACTGCCCAGGACTACGCGGCGGTTTTGACGA
ACAGCGCGAACTGCGGCACCATTTTCCACTCCGACAACAGCTACGGAGAG
AACCTGTACTTGTGTGGCTCCACCGGGGAGGCCAGCTGCTACACCGCCGA
AGGAGCCATGGAGGCCCTCTGACTACGCGGCGGTTTTGACGAACAGCGCG
AACTGCGGCACCATTTTCCACTCCGACAACAGCTACGGAGAGAACCTGTA
CTTGTGTGGCTCCACCGGGGAGGCCAGCTGCTACACCGCCGAAGGAGCCA
TGGAGGCCCTCTACACTGATGAACTCACCGGCAACGTGAACTCGTATGGA
GGACACGCGACGGCTATCCTGTGGAAGGCCACCGAGAGAGTGGGATGCGC
GGTGGACACGTGCGAGTCCGGCGACTTCAAATACCACACGCTCGTTTGCA
ACTTCGACCCTGCACACTGATGAACTCACCGGCAACGTGAACTCGTATGG
AGGACACGCGACGGCTATCCTGTGGAAGGCCACCGAGAGAGTGGGATGCG
CGGTGGACACGTGCGAGTCCGGCGACTTCAAATACCACACGCTCGTTTGC
AACTTCGACCCTGCTGGAAACAGCCCCGCCACGGAGCAAAACGTTGAGCT
TCCTTCCAAGACCGAAGCAGAGTGCGCCCTCTAGTGGAAACAGCCCCGCC
ACGGAGCAAAACGTTGAGCTTCCTTCCAAGACCGAAGCAGAGTGCGCCCT
CTAG
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