mRNA_S-dermatodea_contig9709.17712.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9709.17712.1
Unique NamemRNA_S-dermatodea_contig9709.17712.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A6H5JFL2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFL2_9PHAE)

HSP 1 Score: 549 bits (1415), Expect = 2.710e-190
Identity = 300/390 (76.92%), Postives = 320/390 (82.05%), Query Frame = 2
Query:   38 TMVRLS-LLLLACLAFRTSPTTAFMPPLASGPRDSSLRHTSPSPGASTCSASPQRN----HARTRS--RRPAGTGLAMSTPDAATPSSPPRVETTPPVAPSAETTITPGAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGNINDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEVKM 1186
            TM R S LL++A LA   SP  AF PP  +G      +H   +         P R     H R R   RR   TGL+MSTP  A   +PP V+    V   AETTI PGAKISNEWELDVYSRPVVGADGKKLWELL+CDSTGN RHV+PIPSNMVNSREVR+ IEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVE+AVKPCRTTYAMYQWLEERERDVYP+M G+K TMKQ AFFDIRTPTPLPDALRGEQYAFV MPVSEFR+GNIND+NVGVGRLCPLDASL DDAMIPGLA++T RAEPLATWMTGLEVA+FKADLKNRELALECGINTQYLVARVQGDQRKEAQ FEE KRALGGFHFVAVQS+ DADDVAGFWLLKEV M
Sbjct:    3 TMPRSSFLLIVAALASWASPCGAFAPPRLAG-----RQHQHDATXXXXXXXXPARTQPACHVRAREGCRRRHSTGLSMSTP--AESFTPPSVKEEG-VGAGAETTIKPGAKISNEWELDVYSRPVVGADGKKLWELLICDSTGNFRHVSPIPSNMVNSREVRRTIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEVAVKPCRTTYAMYQWLEERERDVYPAMAGFKPTMKQPAFFDIRTPTPLPDALRGEQYAFVTMPVSEFRQGNINDENVGVGRLCPLDASLPDDAMIPGLAMFTARAEPLATWMTGLEVAYFKADLKNRELALECGINTQYLVARVQGDQRKEAQGFEEAKRALGGFHFVAVQSNPDADDVAGFWLLKEVAM 384          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A836CLG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG2_9STRA)

HSP 1 Score: 428 bits (1101), Expect = 3.550e-143
Identity = 207/289 (71.63%), Postives = 243/289 (84.08%), Query Frame = 2
Query:  317 SAETTITPGAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREG-NINDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEV 1180
            ++ETTI PGA IS++WE+DVYSRPVVG DGKKLWELL+CDSTGN +HV  IPSNMVNSREVRK +E +IE AP   +P+ IRFFRNAMFNMI+IAL EV++ V+PCRTTYA+Y WLE RER+VYP M GY  TM Q  FFDIRTP+ LPDALRG++YAFV +PVSEFR+G +I+D N+G+GRLCP+D  + DDAM+ GLA++TKRA PLATW++GLEVAF KADLK REL +ECGI+TQYLVARV  DQR EAQNFE  KR+LGG HFVAVQ D D D VAGFWLLKEV
Sbjct:   71 ASETTIEPGATISDQWEMDVYSRPVVGKDGKKLWELLLCDSTGNFKHVERIPSNMVNSREVRKAVERIIEEAP--LRPSTIRFFRNAMFNMINIALSEVDVTVRPCRTTYALYNWLEARERNVYPEMEGYTPTMTQGNFFDIRTPSRLPDALRGDKYAFVALPVSEFRKGGSIDDSNIGLGRLCPIDPEIPDDAMVQGLAVFTKRALPLATWLSGLEVAFMKADLKRRELVMECGISTQYLVARVTDDQRAEAQNFEAGKRSLGGLHFVAVQEDPDIDQVAGFWLLKEV 357          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A7S4D6F7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6F7_HETAK)

HSP 1 Score: 340 bits (873), Expect = 3.240e-109
Identity = 165/278 (59.35%), Postives = 211/278 (75.90%), Query Frame = 2
Query:  353 SNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGNINDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEVKM 1186
            +++WELDVYSRPVV   GKKLWELL+ DS+G  RH   IPSNMVNSREVRK IE  I+ A     P  IRFFRNAMFNMI+IAL E+++ V P RTTY++Y+WL++RE++VYP M GYK TM Q +FFDI+TP  LPDALRGEQYAFV +P   FR G INDDN+G G++  L A + DDAMI G+ + ++RA  LA W++GLEVA+ +ADL+ R+  LE GI+T+YL+A+++ DQR EAQ FE+ K  + G HFV VQ D +AD+V GFWLL+E K+
Sbjct:   61 TDQWELDVYSRPVVDEKGKKLWELLITDSSGAFRHEEIIPSNMVNSREVRKRIEKAIDEAE--VPPKTIRFFRNAMFNMINIALSELDVNVVPSRTTYSLYEWLDQREKEVYPKMEGYKPTMVQPSFFDIKTPEKLPDALRGEQYAFVSLPAECFRNGEINDDNIGCGKIFSLPADIPDDAMIQGMLLLSRRAGALAAWLSGLEVAYVRADLQRRDAVLETGIDTRYLMAKLRDDQRVEAQAFEQGKARMQGVHFVGVQEDPEADEVEGFWLLREAKL 336          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A7S2V5W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5W1_9STRA)

HSP 1 Score: 325 bits (832), Expect = 5.830e-103
Identity = 156/278 (56.12%), Postives = 203/278 (73.02%), Query Frame = 2
Query:  353 SNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGNINDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEVKM 1186
            S+EWE+DVYSRPV  A GKKLWE+L+CDSTG  +H   +PSNMVNSREV+K IE VI+ AP   KP V+R+FR AM NM++IAL  +++ V P RTTY + +WLE+RE++VYP M GY   M      DIRTP  LPDAL  +QYAFV +P+S FR G ++ +N+G+G+LCP+D SL DD M+ G+ I T+RA+ LA WMTGLEVAF +ADLK +E+ LE GI+TQ+ + R   +QR EAQ FE  KR   G HF+AVQ + D ++V GFWLL+E  +
Sbjct:   69 SDEWEVDVYSRPVKDARGKKLWEILICDSTGEFKHCQALPSNMVNSREVKKAIEKVIDDAP--VKPKVVRYFRVAMQNMLNIALGGLDMQVIPSRTTYRLLEWLEQREKEVYPQMDGYNPNMVNPPGLDIRTPQTLPDALVADQYAFVALPISYFRNGEVSAENIGLGKLCPIDPSLPDDTMVQGVVIVTRRAKALAAWMTGLEVAFVRADLKKKEMILEVGISTQFYMVRFNENQRAEAQVFENGKRQANGIHFLAVQKEFDEEEVEGFWLLREASV 344          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A7R9Z2V2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z2V2_9STRA)

HSP 1 Score: 318 bits (815), Expect = 3.200e-100
Identity = 160/297 (53.87%), Postives = 213/297 (71.72%), Query Frame = 2
Query:  305 PVAPSAETTITPGAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQA----AFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGN-INDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEV 1180
            PV P++   +  G + + EWELD YSRPV+  +GKKLWE+L+ DS+G+ R    +PSN VNSRE+R+++E  +E A   SKP+ IRFFR AMFNMI+IAL EV++  +P R T+A+ QWLEER RDVYP M GY+ TM  A    +F D+RTP  LPDALRGE+YAFV +P++EFREG  + ++N+GVGRLCP+D  L  D+ + G+ + T RA+ LA+W+ G EV+ FK DL+ R L +E  I+ QYL+A++   QR E   FEE K ALGG HF++VQ D D DD AGFWLLKE+
Sbjct:   62 PVVPASTKEVIEGRQPTEEWELDCYSRPVM-VNGKKLWEVLLTDSSGSFRICETLPSNKVNSRELRRVVEEAMEDAD--SKPSTIRFFRGAMFNMINIALSEVDVVARPSRCTFALAQWLEERNRDVYPKMEGYRATMAGATRGPSFLDVRTPVKLPDALRGEKYAFVSLPLAEFREGGGVTNENIGVGRLCPVDPDLPADSFVQGIVVLTTRAKALASWLAGTEVSGFKCDLRKRTLVMETDIDNQYLMAKLNDVQRAEGAAFEEGKDALGGLHFISVQMDED-DDPAGFWLLKEI 354          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: B8C2R8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2R8_THAPS)

HSP 1 Score: 316 bits (810), Expect = 1.850e-99
Identity = 156/284 (54.93%), Postives = 209/284 (73.59%), Query Frame = 2
Query:  347 KISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQ-----AAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGN-INDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEV 1180
            K+S EWELD YSRPV+    KKLWE+L+ DS+GN++    +PSN VNSREVR+++E +I+ +    KP+ IRFFR AMFNMI+IAL E+++  KP R T+A+ QW+E+R RDVYP M GY+ TM         F DIRT   LPDALRGE+YAFVG+P++EF  G  I+++N+GVGRLCP+D++LA D+ + G+ I T RA+ LA+W+ G EVA  KADL+ REL +E  I+ QYL+A++  DQR+EA  +EE K AL G HF++VQ D D DD AGFWLL+E+
Sbjct:   75 KVSEEWELDCYSRPVLVDGKKKLWEILMTDSSGNMKVCRALPSNKVNSREVRRVVEEIIDESE--VKPSTIRFFRGAMFNMINIALSEIDVIAKPSRCTFALAQWIEDRNRDVYPKMEGYRATMSGIGGIGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFLPGGGIDNNNIGVGRLCPVDSTLAADSFVQGVVILTPRAKALASWLAGTEVAGLKADLRKRELVMETDIDNQYLMAKLNDDQRREAAVYEEGKDALNGLHFISVQKDED-DDPAGFWLLREI 355          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A7S1YY94_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YY94_TRICV)

HSP 1 Score: 313 bits (802), Expect = 7.300e-99
Identity = 158/299 (52.84%), Postives = 212/299 (70.90%), Query Frame = 2
Query:  302 PPVAPSAETTITPGAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETM-----KQAAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGN-INDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEV 1180
            P V P++   + PG   ++EWELD YSRPV+   GKKLWE+L+ DS+G+ R    +PSN VNSRE+R+++E  IE +   +KP+ IRFFR AMFNMI+IAL EV++  +P R T+++ QWLEER RDVYP M GY+ TM     +  +F D+RTP  LPD+LRGE+YAFV +P++EFREG  + +DNVGVGRLCP+D  L  DA + G+ I T RA  L++W+ G EV+ FK DL+ R L +E  I+ QYL+A++   QR E   FEE K +LGG HF++VQ D D+D  AGFWLLKE+
Sbjct:   19 PAVPPASTKEVVPGRDPTDEWELDCYSRPVM-VGGKKLWEVLLTDSSGSFRLCETLPSNKVNSRELRRVVEEAIEESD--TKPSTIRFFRGAMFNMINIALSEVDVVARPSRCTFSLAQWLEERNRDVYPKMEGYRATMAGGTGRGPSFLDVRTPVRLPDSLRGEKYAFVALPLAEFREGGGVTNDNVGVGRLCPIDPELPADAFVQGIVILTTRAPALSSWLAGTEVSGFKCDLRKRTLVMETDIDNQYLMAKLNDIQRAEGTAFEEGKDSLGGLHFISVQVDEDSDP-AGFWLLKEI 313          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A7S4M7P1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M7P1_9STRA)

HSP 1 Score: 310 bits (795), Expect = 4.700e-97
Identity = 156/296 (52.70%), Postives = 211/296 (71.28%), Query Frame = 2
Query:  308 VAPSAETTITPGAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETM----KQAAFFDIRTPTPLPDALRGEQYAFVGMPVSEFREGN-INDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEV 1180
            V P++   +  G + + EWELD YSRPV+  +GKKLWE+L+ DS+G+ R    +PSN VNSRE+R+++E  +E +   +KP+ IRFFR AMFNMI+IAL EV++  +P R T+A+ QWLEER RDVYP M GY+ TM    +  +F D+RTP  LPDALRGE+YAFV +P++EFREG  + ++N+GVGR+CP+D  L  DA + G+ I T RA  LA+W+ G EV+ FK DL+ R L +E  I+ QYL+A++   QR E   FEE K AL G HFV+VQ+D D DD AGFWLL+E+
Sbjct:   76 VVPASTKELIEGREPTEEWELDCYSRPVM-VNGKKLWEVLLTDSSGSFRVCETLPSNKVNSRELRRVVEEAMEDSD--AKPSTIRFFRGAMFNMINIALSEVDVVARPSRCTFALAQWLEERNRDVYPKMDGYRATMAAGTRGPSFLDVRTPVKLPDALRGEKYAFVSLPLAEFREGGGVTNENIGVGRICPVDPELPADAFVQGVVILTSRANALASWLAGTEVSDFKCDLRKRMLVMETDIDNQYLMAKLNDVQRAEGTAFEEGKDALNGLHFVSVQTDED-DDPAGFWLLREI 367          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: W7TRA2_9STRA (Rna binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRA2_9STRA)

HSP 1 Score: 309 bits (791), Expect = 9.770e-97
Identity = 150/280 (53.57%), Postives = 204/280 (72.86%), Query Frame = 2
Query:  347 KISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEIAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAA-FFDIRTPTPLPDALRGEQYAFVGMPVSEFREGNINDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEVK 1183
            +++ EWELD YSRPVVG DGKKLWEL+VCDS G  R V  +PSNMVNSRE+RK++E VIE AP   KP VIRFFRNAMFNM+ +ALK++++ V P R+T A+Y W++ERER+VY  +PGY   M+ +   F +R P  +PD L G++YAF+ +PVS+F +G +N +N G+GRL  LDASL  D  + GL IY+ RA+ +A W+  +E+ F KA+   R + LE GI+TQYL+A +   +R EAQ FE+ K  LGG HF+A+Q+D ++D V GF+LL+E K
Sbjct:   73 RLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAP--VKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERK 350          
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Match: A0A7S2F341_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F341_9STRA)

HSP 1 Score: 308 bits (789), Expect = 1.760e-96
Identity = 150/287 (52.26%), Postives = 208/287 (72.47%), Query Frame = 2
Query:  341 GAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPIPSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVE-IAVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAA----FFDIRTPTPLPDALRGEQYAFVGMPVSEFREGNINDDNVGVGRLCPLDASLADDAMIPGLAIYTKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKEAQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEVKM 1186
            G   ++ WELD YSRPV+  +GKK+WELL+CDS+G  +HV  IPSN VNSREVR  IE VI+      +P VIRFFRN+M N++ IAL ++  I V+P R+TYAMYQWLEER ++VYP+MPG+K++M ++     F DI TP  LPD LR +Q+AFV +P+SE  +G +N +N+GVG++CPL   L +D+M+ G+   T R + LA+W +G ++AF +ADLK RE+ +E G++T+YL+AR+  +QR E Q FE  K  L G HFVA+Q+ +  D+VAGFWLL+EV M
Sbjct:   63 GTAGTDVWELDCYSRPVMAKNGKKVWELLICDSSGVFQHVEEIPSNKVNSREVRGRIEKVIDNV--AVRPRVIRFFRNSMLNILSIALNDIGGIKVEPSRSTYAMYQWLEERNKNVYPTMPGFKKSMVKSGGNGMFLDISTPDRLPDMLRADQFAFVSLPLSEIIDGGVNPENIGVGQMCPLPKGLPEDSMVQGVLFLTTRGDNLASWFSGTDLAFMRADLKRREMVMEVGLSTRYLMARLNEEQRIEGQAFEAGKTVLKGLHFVAIQNTATDDEVAGFWLLREVDM 347          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9709.17712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFL2_9PHAE2.710e-19076.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLG2_9STRA3.550e-14371.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D6F7_HETAK3.240e-10959.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5W1_9STRA5.830e-10356.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9Z2V2_9STRA3.200e-10053.87Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8C2R8_THAPS1.850e-9954.93Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1YY94_TRICV7.300e-9952.84Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4M7P1_9STRA4.700e-9752.70Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7TRA2_9STRA9.770e-9753.57Rna binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2F341_9STRA1.760e-9652.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9709contigS-dermatodea_contig9709:2906..6275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score542.0
Seed ortholog evalue2.3e-151
Seed eggNOG ortholog2880.D7G764
Preferred nameTAB2
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009639,GO:0009640,GO:0009657,GO:0009658,GO:0009704,GO:0009791,GO:0009987,GO:0010467,GO:0015979,GO:0016043,GO:0019538,GO:0019684,GO:0022607,GO:0032501,GO:0032502,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0048856,GO:0050896,GO:0065003,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.photosystem I assembly
EggNOG OGs2CDXI@1,2QVJR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionProtein of unknown function DUF1092
Ec32 orthologEc-01_010890.1
Exons5
Model size1844
Cds size1170
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925427.0480394-UTR-S-dermatodea_contig9709:2905..29241622925427.0480394-UTR-S-dermatodea_contig9709:2905..2924Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9709 2906..2924 +
1694079925.8593564-UTR-S-dermatodea_contig9709:2905..29241694079925.8593564-UTR-S-dermatodea_contig9709:2905..2924Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9709 2906..2924 +
1622925427.128746-UTR-S-dermatodea_contig9709:5620..62751622925427.128746-UTR-S-dermatodea_contig9709:5620..6275Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9709 5621..6275 +
1694079925.9261549-UTR-S-dermatodea_contig9709:5620..62751694079925.9261549-UTR-S-dermatodea_contig9709:5620..6275Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9709 5621..6275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925427.0589242-CDS-S-dermatodea_contig9709:2924..36501622925427.0589242-CDS-S-dermatodea_contig9709:2924..3650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 2925..3650 +
1694079925.8699355-CDS-S-dermatodea_contig9709:2924..36501694079925.8699355-CDS-S-dermatodea_contig9709:2924..3650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 2925..3650 +
1622925427.0708141-CDS-S-dermatodea_contig9709:4293..44061622925427.0708141-CDS-S-dermatodea_contig9709:4293..4406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 4294..4406 +
1694079925.878902-CDS-S-dermatodea_contig9709:4293..44061694079925.878902-CDS-S-dermatodea_contig9709:4293..4406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 4294..4406 +
1622925427.085418-CDS-S-dermatodea_contig9709:4650..47711622925427.085418-CDS-S-dermatodea_contig9709:4650..4771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 4651..4771 +
1694079925.8925273-CDS-S-dermatodea_contig9709:4650..47711694079925.8925273-CDS-S-dermatodea_contig9709:4650..4771Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 4651..4771 +
1622925427.098417-CDS-S-dermatodea_contig9709:5034..51251622925427.098417-CDS-S-dermatodea_contig9709:5034..5125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 5035..5125 +
1694079925.9042857-CDS-S-dermatodea_contig9709:5034..51251694079925.9042857-CDS-S-dermatodea_contig9709:5034..5125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 5035..5125 +
1622925427.115013-CDS-S-dermatodea_contig9709:5501..56201622925427.115013-CDS-S-dermatodea_contig9709:5501..5620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 5502..5620 +
1694079925.914689-CDS-S-dermatodea_contig9709:5501..56201694079925.914689-CDS-S-dermatodea_contig9709:5501..5620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9709 5502..5620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9709.17712.1prot_S-dermatodea_contig9709.17712.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9709 2925..5620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9709.17712.1

>prot_S-dermatodea_contig9709.17712.1 ID=prot_S-dermatodea_contig9709.17712.1|Name=mRNA_S-dermatodea_contig9709.17712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=390bp
MKQRPLTMVRLSLLLLACLAFRTSPTTAFMPPLASGPRDSSLRHTSPSPG
ASTCSASPQRNHARTRSRRPAGTGLAMSTPDAATPSSPPRVETTPPVAPS
AETTITPGAKISNEWELDVYSRPVVGADGKKLWELLVCDSTGNLRHVTPI
PSNMVNSREVRKIIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEI
AVKPCRTTYAMYQWLEERERDVYPSMPGYKETMKQAAFFDIRTPTPLPDA
LRGEQYAFVGMPVSEFREGNINDDNVGVGRLCPLDASLADDAMIPGLAIY
TKRAEPLATWMTGLEVAFFKADLKNRELALECGINTQYLVARVQGDQRKE
AQNFEETKRALGGFHFVAVQSDSDADDVAGFWLLKEVKM*
back to top

mRNA from alignment at S-dermatodea_contig9709:2906..6275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9709.17712.1 ID=mRNA_S-dermatodea_contig9709.17712.1|Name=mRNA_S-dermatodea_contig9709.17712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3370bp|location=Sequence derived from alignment at S-dermatodea_contig9709:2906..6275+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAGCACGGCATCAGCGCATGAAGCAAAGGCCATTGACCATGGTGCGGT TGAGTCTCCTGCTGCTAGCATGCCTAGCATTTCGCACAAGTCCCACCACA GCATTCATGCCTCCGCTAGCGAGCGGGCCGCGGGATAGCAGCCTTCGCCA CACCTCGCCAAGTCCAGGTGCATCAACATGCTCTGCATCACCGCAGCGCA ATCATGCGCGAACACGCAGCAGGCGGCCAGCCGGCACAGGACTGGCAATG TCAACCCCAGACGCCGCTACGCCGTCCTCGCCGCCTCGAGTAGAGACCAC ACCGCCCGTGGCGCCGAGTGCAGAGACCACAATAACGCCGGGCGCGAAAA TCAGCAACGAGTGGGAGCTGGACGTGTACTCCAGGCCCGTGGTCGGGGCT GACGGAAAGAAGCTGTGGGAGCTGCTGGTGTGCGACTCTACCGGCAACTT GAGACACGTTACGCCTATACCGAGCAACATGGTCAACTCCCGGGAGGTGC GGAAGATAATCGAGGGAGTGATCGAGGCGGCGCCCGGCGGCTCCAAGCCG ACCGTGATCCGGTTCTTTCGCAACGCCATGTTCAACATGATCGATATCGC ACTCAAGGAGGTGGAGATCGCCGTGAAACCCTGCAGGACGACGTATGCCA TGTACCAGTGGCTCGAGGAGCGAGAACGCGACGTGTACCCGAGCATGCCT GGCTACAAGGAGACCATGAAGCAGGCAGCATTCTTCGATATCAGGGTGAG GCATGACGGGAACTATGTGTGTGTGCATGTGTGCATCCAGAGCGTTCAAG TGCGGGAGAGGAAGCCAACACCTGTGTTGCTTTTTTGTCTCAGCATTCCG TATAATTGGAGCTGTCCCATCTGGTACCCGTGACACTTGTCCGTCCCATC CATCTGGCACACGCGCTACTCTCCAAATGGTGTGTTGCTGGTTGCGCGAA CACGCGATTGAGGGTGTTTCGGATGAAGGCTGTTTGTCCGGTTCAGGCGC TTTTTGTGTGCAGTGGTTGGCATCAATAAAACGGGTTGCGCTGCGCCAAC TGCTGTGCACACTGCCACTCTGTGCTCAGAGACCCCCCGATGTGCCTCGG TGTGGCGTGGCTCGCGGTGCGATGCCGAGCTGTTTGAAGCCGACAGACGC GATGCGAAATCACAGGTCTAGATAACCCACCACCTGGGTTCGCCCCCAAG GACAGCGTGTGCCCCACCTGTGTGATTCGCCTGCCGGGTAGTGGTACGGG CCTCACAGCCCACTGTAGCGTTCGTTGTGCCCAATTACTTTTTCAAGACG GACTCCTGCTGACCGGCGTCAAGCTAAACACGTCGCCCCGTCCTTTCTCT CTCTCTCCCCCCCACCCCCCCCCCTCTCGCATGCTAAGACTCCCACCCCT TTGCCAGACGCTCTACGCGGAGAACAGTATGCCTTCGTGGGCATGCCGGT CTCCGAGTTTCGTGAGGGGAATATCAACGACGACAACGTTGGTGTGGGCA GGTGATGTCCTGTGATATATACAACATGCATACTGCATCCCCCGACAGTA CGGCCCGTCTTCGAAAGCAGTCGAGGAGCCCGCTGTGACCATTGCCGTTG GTTTCGACAGTGGTCGATTTGCTCGCCCCTGATCTTGGGAGCACATTGGT AAGGTCTACATTGTTCTGCCTGCCGTGCCTGCTCGCTCTCGATAAGTAAA TGTCGGTGCTTTTTTTGGACCTGGACGCCTTTACTCTTCCACCAGGCTGT GCCCGCTCGACGCATCCCTCGCGGATGATGCGATGATCCCCGGGCTTGCT ATCTATACGAAGAGAGCAGAGCCTCTGGCGACTTGGATGACGGGTCTCGA GGTGGCATTTTTCAAGGTGGGGAGCTCCCCTGTAGTGCGGGTGTGGGGGT GTCAAGACAGGGGTTGAGGTCGATGGCGGCGTCACTTTTCATTCAGGAGG GTACATGGCAGAACGTCGCGAACCTTCACGCGGTCGTACGTGAAATATTG ATGCCGGCGCCCCTTCCTCGAACTCTGTAGTTACGTTTCACTCGTCCGTG GTGACATGTGTACCGTTCGCTATGGGTGTGGGCGCTGTCATGACTTAAAA TATGCGCTCCGCCCGACCTGTGTTTCCAGGCTGATCTCAAGAATCGAGAG CTTGCGCTCGAGTGTGGCATCAACACGCAGTATCTCGTTGCTCGTGTACA GGGAGACCAACGAAAGGAAGGTGAGCTGGGCGTCCGTCTTCTGGTGTAAC CGATAGCTTCATACAAGCTCCCTTAAGCGTCCGCAGTTGAGGCTGGCTCA TGTAACGGCACAGCCTGCGCGGATCGTCAACGCACTTCTTCGCTGCCATC GTAGCCGTGAGTTCGAGGGGCCGGTTGTTCTTGTTGCTGCTACGAGCATA ATCGTAGTGGCAAGGTCGTCTAGATTCATTTACGCATGGTTACTGCCCTG ATCAGGAGGCGTTCGTTTTTCGAGACTCCCTGCATTTCACGTTGTGTACC GTGAATACACGCCACCCCCTGCCCCCACCCCACCCTCTAACGCTGTGCGC ACTCGATCCTCCCCTTTTCCCTTGTTCTTTCCCACTGTTTTCGCAGCGCA AAATTTTGAGGAGACGAAACGGGCGTTGGGGGGTTTCCATTTTGTGGCGG TGCAGAGCGACTCTGACGCTGACGATGTGGCGGGTTTTTGGTTACTGAAG GAAGTTAAAATGTAGTTGGTTGGAGCTTCGGACTGCCTTGTGTGTTGACG GGCCCCTGTTTCTCGAGCATGCTCGGCGGTGTTAAGGTTTCCCTTGGTTC GTCGATGTAGTGGCCACAGCTGGCATTTTGAGGTCAGTTAATGTGAGACC ATCGTCATCGTCATAATCTCACCTCATATTTGTTTGTATGGCGAAGGGTG CGGGTTCACTGGCCGGTGTCTTGGTCCATGGTGGAAATCAATATGAATCG TCGTCTCGTGGCACCACCACTCGCATGGCATGGCTCTCAAGAAAACATAG GCTGTGAATGAAGAGAGAGGGAAACGGTGCGACCGAGTTTTTTTTGCCAA TCAGAGCCCTCCTTCACAAAACATTGGCCAATAGGAAATGTGGGGGTACA CTTTCCCCATCTCTCGTTGAACTGAGAAAGTGCTGACATGCTCGGCCGAA TCGATTGGTGCGACTTGTGGGTATGGCAGCGTGGAGGGTAGACATCATCC GGAAGCACACGATTGCTGCATACTACACACTCGTGGAGCAACTCCGCTTC GAGTGTTGCGCCACCCGGCTATAACTCAATTTCAGCTGTGACGATGAGCA ATTGGTTCCGTTTATGGATCGCCACTGTCCGTCGGTTTCATAAAATAATC AAACTAATTCGTATAAAAAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9709:2906..6275+

>mRNA_S-dermatodea_contig9709.17712.1 ID=mRNA_S-dermatodea_contig9709.17712.1|Name=mRNA_S-dermatodea_contig9709.17712.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2340bp|location=Sequence derived from alignment at S-dermatodea_contig9709:2906..6275+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCAAAGGCCATTGACCATGGTGCGGTTGAGTCTCCTGCTGCTAGC
ATGCCTAGCATTTCGCACAAGTCCCACCACAGCATTCATGCCTCCGCTAG
CGAGCGGGCCGCGGGATAGCAGCCTTCGCCACACCTCGCCAAGTCCAGGT
GCATCAACATGCTCTGCATCACCGCAGCGCAATCATGCGCGAACACGCAG
CAGGCGGCCAGCCGGCACAGGACTGGCAATGTCAACCCCAGACGCCGCTA
CGCCGTCCTCGCCGCCTCGAGTAGAGACCACACCGCCCGTGGCGCCGAGT
GCAGAGACCACAATAACGCCGGGCGCGAAAATCAGCAACGAGTGGGAGCT
GGACGTGTACTCCAGGCCCGTGGTCGGGGCTGACGGAAAGAAGCTGTGGG
AGCTGCTGGTGTGCGACTCTACCGGCAACTTGAGACACGTTACGCCTATA
CCGAGCAACATGGTCAACTCCCGGGAGGTGCGGAAGATAATCGAGGGAGT
GATCGAGGCGGCGCCCGGCGGCTCCAAGCCGACCGTGATCCGGTTCTTTC
GCAACGCCATGTTCAACATGATCGATATCGCACTCAAGGAGGTGGAGATC
GCCGTGAAACCCTGCAGGACGACGTATGCCATGTACCAGTGGCTCGAGGA
GCGAGAACGCGACGTGTACCCGAGCATGCCTGGCTACAAGGAGACCATGA
AGCAGGCAGCATTCTTCGATATCAGGATGAAGCAAAGGCCATTGACCATG
GTGCGGTTGAGTCTCCTGCTGCTAGCATGCCTAGCATTTCGCACAAGTCC
CACCACAGCATTCATGCCTCCGCTAGCGAGCGGGCCGCGGGATAGCAGCC
TTCGCCACACCTCGCCAAGTCCAGGTGCATCAACATGCTCTGCATCACCG
CAGCGCAATCATGCGCGAACACGCAGCAGGCGGCCAGCCGGCACAGGACT
GGCAATGTCAACCCCAGACGCCGCTACGCCGTCCTCGCCGCCTCGAGTAG
AGACCACACCGCCCGTGGCGCCGAGTGCAGAGACCACAATAACGCCGGGC
GCGAAAATCAGCAACGAGTGGGAGCTGGACGTGTACTCCAGGCCCGTGGT
CGGGGCTGACGGAAAGAAGCTGTGGGAGCTGCTGGTGTGCGACTCTACCG
GCAACTTGAGACACGTTACGCCTATACCGAGCAACATGGTCAACTCCCGG
GAGGTGCGGAAGATAATCGAGGGAGTGATCGAGGCGGCGCCCGGCGGCTC
CAAGCCGACCGTGATCCGGTTCTTTCGCAACGCCATGTTCAACATGATCG
ATATCGCACTCAAGGAGGTGGAGATCGCCGTGAAACCCTGCAGGACGACG
TATGCCATGTACCAGTGGCTCGAGGAGCGAGAACGCGACGTGTACCCGAG
CATGCCTGGCTACAAGGAGACCATGAAGCAGGCAGCATTCTTCGATATCA
GGACTCCCACCCCTTTGCCAGACGCTCTACGCGGAGAACAGTATGCCTTC
GTGGGCATGCCGGTCTCCGAGTTTCGTGAGGGGAATATCAACGACGACAA
CGTTGGTGTGGGCAGACTCCCACCCCTTTGCCAGACGCTCTACGCGGAGA
ACAGTATGCCTTCGTGGGCATGCCGGTCTCCGAGTTTCGTGAGGGGAATA
TCAACGACGACAACGTTGGTGTGGGCAGGCTGTGCCCGCTCGACGCATCC
CTCGCGGATGATGCGATGATCCCCGGGCTTGCTATCTATACGAAGAGAGC
AGAGCCTCTGGCGACTTGGATGACGGGTCTCGAGGTGGCATTTTTCAAGG
CTGTGCCCGCTCGACGCATCCCTCGCGGATGATGCGATGATCCCCGGGCT
TGCTATCTATACGAAGAGAGCAGAGCCTCTGGCGACTTGGATGACGGGTC
TCGAGGTGGCATTTTTCAAGGCTGATCTCAAGAATCGAGAGCTTGCGCTC
GAGTGTGGCATCAACACGCAGTATCTCGTTGCTCGTGTACAGGGAGACCA
ACGAAAGGAAGGCTGATCTCAAGAATCGAGAGCTTGCGCTCGAGTGTGGC
ATCAACACGCAGTATCTCGTTGCTCGTGTACAGGGAGACCAACGAAAGGA
AGCGCAAAATTTTGAGGAGACGAAACGGGCGTTGGGGGGTTTCCATTTTG
TGGCGGTGCAGAGCGACTCTGACGCTGACGATGTGGCGGGTTTTTGGTTA
CTGAAGGAAGTTAAAATGTAGCGCAAAATTTTGAGGAGACGAAACGGGCG
TTGGGGGGTTTCCATTTTGTGGCGGTGCAGAGCGACTCTGACGCTGACGA
TGTGGCGGGTTTTTGGTTACTGAAGGAAGTTAAAATGTAG
back to top