mRNA_S-dermatodea_contig9670.17679.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9670.17679.1
Unique NamemRNA_S-dermatodea_contig9670.17679.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.030e-42
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLLDHSLRTGQPGLAHVLMTSWALDFESRDFRFLAHESGILPTLQAMVTLTNTAGMASSTL 276
            RHHYLKGLEGCSA LL  VQ AFE LYGLLRTLLD SLRTGQPGLAHVLMTSWALDFESRD++FLAH+SGILPTLQAMVTLTNTA +ASS+L
Sbjct: 2482 RHHYLKGLEGCSAGLLARVQGAFEDLYGLLRTLLDDSLRTGQPGLAHVLMTSWALDFESRDYQFLAHKSGILPTLQAMVTLTNTASLASSSL 2573
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.430e-20
Identity = 58/101 (57.43%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLLDHSLRTGQPGLAHVLMTSWALDFESRDFRFLAHESGILPTLQAMVTLTNTAGMASSTLAAMSRASGG 303
            RHHYLKGLEGCSA LL  VQ AFE LYG LRTLLDHS+RTGQ                         +SGILPTLQAMVTLTNTA +ASS+L +++  S G
Sbjct: 2264 RHHYLKGLEGCSAGLLARVQGAFEDLYGQLRTLLDHSIRTGQ-------------------------KSGILPTLQAMVTLTNTASLASSSLDSLNDTSRG 2339
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A3R6YYL3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YYL3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.930e-11
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLLDHSLRTGQ-----PGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQAMVTLTNTA 255
            RHHYLKGLEGCS  +L  VQ AF  LYG L  +L  +   G      P  +HV    L+ +WA+DFE RD  FL H    G+L  L ++ TL++ A
Sbjct: 2190 RHHYLKGLEGCSRPVLKQVQEAFMELYGSLAQMLAKASSQGASSKPTPRTSHVWQQSLIGAWAIDFEPRDHEFLLHVDILGLLTKLFSVATLSSNA 2285
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A024UQY4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQY4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.950e-11
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLLDHSLRTGQ-----PGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQAMVTLTNTA 255
            RHHYLKGLEGCS  +L  VQ AF  LYG L  +L  +   G      P  +HV    L+ +WA+DFE RD  FL H    G+L  L ++ TL++ A
Sbjct: 2190 RHHYLKGLEGCSRPVLKQVQEAFMELYGSLAQMLAKASSQGASSKPTPRTSHVWQQSLIGAWAIDFEPRDHEFLLHVDILGLLTKLFSVATLSSNA 2285
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A3R6XSF5_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XSF5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.270e-9
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLL-----DHSLRTGQPGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQAMVTLTNTA 255
            RHHYLKGLEGC+  +L  VQ AF  LY LL  +L       +  TG    + V    L+ +WALDFE RD  FL H    G+L  L ++ TL++ A
Sbjct: 2091 RHHYLKGLEGCTRPVLKRVQDAFMELYALLAQMLAKASASPTSSTGASSGSIVWQQSLIGAWALDFEPRDHEFLLHVDILGLLTKLFSVATLSSNA 2186
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A397E4G1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E4G1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.290e-9
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLL-----DHSLRTGQPGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQAMVTLTNTA 255
            RHHYLKGLEGC+  +L  VQ AF  LY LL  +L       +  TG    + V    L+ +WALDFE RD  FL H    G+L  L ++ TL++ A
Sbjct: 2096 RHHYLKGLEGCTRPVLKRVQDAFMELYALLAQMLAKASASPTSSTGASSGSIVWQQSLIGAWALDFEPRDHEFLLHVDILGLLTKLFSVATLSSNA 2191
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A418DT83_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DT83_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.760e-9
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLL-----DHSLRTGQPGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQAMVTLTNTA 255
            RHHYLKGLEGC+  +L  VQ AF  LY +L  +L       +  TG    + V    L+ +WALDFE RD  FL H    G+L  L ++ TL++ A
Sbjct:   59 RHHYLKGLEGCTRPVLKRVQDAFMELYAVLAQMLAKASASPTSSTGASSGSIVWQQSLIGAWALDFEPRDHEFLLHVDILGLLTKLFSVATLSSNA 154
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: W4H3C5_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3C5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.830e-9
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLL-----DHSLRTGQPGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQAMVTLTNTA 255
            RHHYLKGLEGC+  +L  VQ AF  LY +L  +L       +  TG    + V    L+ +WALDFE RD  FL H    G+L  L ++ TL++ A
Sbjct: 2216 RHHYLKGLEGCTRPVLKRVQDAFMELYAVLAQMLAKASASPTSSTGASSGSIVWQQSLIGAWALDFEPRDHEFLLHVDILGLLTKLFSVATLSSNA 2311
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BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Match: A0A396ZV12_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZV12_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.020e-8
Identity = 40/88 (45.45%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLL-----DHSLRTGQPGLAHV----LMTSWALDFESRDFRFLAHES--GILPTLQA 231
            RHHYLKGLEGC+  +L  VQ AF  LY LL  +L       +  TG    + V    L+ +WALDFE RD  FL H    G+L  L A
Sbjct: 2096 RHHYLKGLEGCTRPVLKRVQDAFMELYALLAQMLAKASASPTSSTGASSGSIVWQQSLIGAWALDFEPRDHEFLLHVDILGLLTKLNA 2183
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9670.17679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FVC4_ECTSI2.030e-4286.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE1.430e-2057.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3R6YYL3_9STRA2.930e-1144.79Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024UQY4_9STRA2.950e-1144.79Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A3R6XSF5_9STRA2.270e-943.75B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A397E4G1_9STRA2.290e-943.75Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A418DT83_9STRA5.760e-942.71Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
W4H3C5_9STRA5.830e-942.71Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A396ZV12_9STRA2.020e-845.45Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9670contigS-dermatodea_contig9670:5775..6285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.6e-37
Seed eggNOG ortholog2880.D7FVC4
Preferred nameHERC1
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1477@1,KOG1477@2759
EC2.3.2.26
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size343
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925424.371165-CDS-S-dermatodea_contig9670:5774..59001622925424.371165-CDS-S-dermatodea_contig9670:5774..5900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9670 5775..5900 +
1694079923.9999137-CDS-S-dermatodea_contig9670:5774..59001694079923.9999137-CDS-S-dermatodea_contig9670:5774..5900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9670 5775..5900 +
1622925424.3837926-CDS-S-dermatodea_contig9670:6070..62831622925424.3837926-CDS-S-dermatodea_contig9670:6070..6283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9670 6071..6283 +
1694079924.0140169-CDS-S-dermatodea_contig9670:6070..62831694079924.0140169-CDS-S-dermatodea_contig9670:6070..6283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9670 6071..6283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9670.17679.1prot_S-dermatodea_contig9670.17679.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9670 5775..6283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9670.17679.1

>prot_S-dermatodea_contig9670.17679.1 ID=prot_S-dermatodea_contig9670.17679.1|Name=mRNA_S-dermatodea_contig9670.17679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
RHHYLKGLEGCSAELLVGVQSAFEALYGLLRTLLDHSLRTGQPGLAHVLM
TSWALDFESRDFRFLAHESGILPTLQAMVTLTNTAGMASSTLAAMSRASG
GQLEGAVEKEASG
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mRNA from alignment at S-dermatodea_contig9670:5775..6285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9670.17679.1 ID=mRNA_S-dermatodea_contig9670.17679.1|Name=mRNA_S-dermatodea_contig9670.17679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=511bp|location=Sequence derived from alignment at S-dermatodea_contig9670:5775..6285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCATCACTACCTTAAGGGACTCGAAGGATGCTCGGCGGAGCTGCTAGT
GGGAGTGCAGTCTGCATTCGAAGCCCTATACGGGCTATTGAGGACCTTGC
TCGACCACAGTCTTCGAACGGGACAGGTGACTACACCCCAGCGACGGAAC
GCATAGTCGAGCACGAAAACCAACCGTCCGCGCCCCAACGTAATATTGGT
ACGCGGCGAGCGAAAACCGCATCGATCGCTCAACAACTGTATACTCTCTC
GCGCCTCCGTCGCGAACATGTCGTAATATGCGTGTTTTTGCCTCAGCCTG
GCCTGGCCCATGTGCTGATGACGAGCTGGGCTTTGGACTTCGAGTCGCGA
GATTTCCGATTCCTGGCGCACGAGTCAGGAATACTTCCGACGCTCCAGGC
TATGGTGACTCTCACAAACACGGCGGGAATGGCCAGCTCGACCTTGGCCG
CTATGAGTAGGGCTTCAGGTGGACAGCTGGAAGGGGCGGTCGAGAAGGAA
GCCTCAGGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9670:5775..6285+

>mRNA_S-dermatodea_contig9670.17679.1 ID=mRNA_S-dermatodea_contig9670.17679.1|Name=mRNA_S-dermatodea_contig9670.17679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig9670:5775..6285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCATCACTACCTTAAGGGACTCGAAGGATGCTCGGCGGAGCTGCTAGT
GGGAGTGCAGTCTGCATTCGAAGCCCTATACGGGCTATTGAGGACCTTGC
TCGACCACAGTCTTCGAACGGGACAGCGGCATCACTACCTTAAGGGACTC
GAAGGATGCTCGGCGGAGCTGCTAGTGGGAGTGCAGTCTGCATTCGAAGC
CCTATACGGGCTATTGAGGACCTTGCTCGACCACAGTCTTCGAACGGGAC
AGCCTGGCCTGGCCCATGTGCTGATGACGAGCTGGGCTTTGGACTTCGAG
TCGCGAGATTTCCGATTCCTGGCGCACGAGTCAGGAATACTTCCGACGCT
CCAGGCTATGGTGACTCTCACAAACACGGCGGGAATGGCCAGCTCGACCT
TGGCCGCTATGAGTAGGGCTTCAGGTGGACAGCTGGAAGGGGCGGTCGAG
AAGGAAGCCTCAGGGCCTGGCCTGGCCCATGTGCTGATGACGAGCTGGGC
TTTGGACTTCGAGTCGCGAGATTTCCGATTCCTGGCGCACGAGTCAGGAA
TACTTCCGACGCTCCAGGCTATGGTGACTCTCACAAACACGGCGGGAATG
GCCAGCTCGACCTTGGCCGCTATGAGTAGGGCTTCAGGTGGACAGCTGGA
AGGGGCGGTCGAGAAGGAAGCCTCAGGG
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