prot_S-dermatodea_contig967.17678.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig967.17678.1
Unique Nameprot_S-dermatodea_contig967.17678.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length332
Homology
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BLAST of mRNA_S-dermatodea_contig967.17678.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.170e-17
Identity = 180/359 (50.14%), Postives = 195/359 (54.32%), Query Frame = 0 
Query:   22 EDEVAVKTVATTRPGRTAAKNRKPIVEVATDSEXXXXXXXXXXXXXXXXXXXXXX----DGYSP-------PAKARGKAXXXXXXXXXXXXXXXXXK----------RGTKSKVQKEPVQA------DH-------SDACEVVEPLPPAXXXXXXXXXXXXXXXXXXXXX----SDSEDDIFNMDDSDDNAKTPPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------GVKRGSRMSFSDEDEVFSPDKMSPAAKRLSQKATPAASRLRPTKAVGVEDSDDEGSADENXXXXXXXXXVQEVIKTPRPARSRAGRGQKVVYADLDSXXXXXXXXXXXXXXXSEFEG 331
            E+ VA   V  +RPGR AAKNRKPIV+V +D E                          DGY P       P+KA+G+     XXXXXXXXXXXXX           RG + K      +A      DH       SD CEVVE  P                           SD EDD+F M            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           GVKRG R S SDE +VFSP KMSP  KR SQK+TPAASRLR  K +      D+      XXXXXXXXX  EV KTPRPAR RAGR QKVVYA+LDSXXXXXXXXXXXXXXX EFEG
Sbjct: 1399 EEVVAEPVVKPSRPGRAAAKNRKPIVDVMSDDEEEEEAGFDEDMGDSDDFHSAEENDSDDGYEPTPAKARKPSKAKGRPAAEPXXXXXXXXXXXXXXVETKRGAGGVRGARGKTAVAAPEATTMLSSDHEEEEDGDSDGCEVVEAEPAVAPVRGGRGGRATAGKGRAAAKVTLDSDEEDDVFAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAKSKGVKRGKRNSLSDEGDVFSPQKMSPPMKRASQKSTPAASRLRANKPLA-----DDSDXXXXXXXXXXXXXXVEVTKTPRPAR-RAGRTQKVVYAELDSXXXXXXXXXXXXXXXXEFEG 1751
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig967.17678.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFS2_9PHAE4.170e-1750.14DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig967contigS-dermatodea_contig967:14271..21754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig967.17678.1mRNA_S-dermatodea_contig967.17678.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig967 14177..22245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig967.17678.1 ID=prot_S-dermatodea_contig967.17678.1|Name=mRNA_S-dermatodea_contig967.17678.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=332bp
MVESDSEDDDEMFDADDSRVLEDEVAVKTVATTRPGRTAAKNRKPIVEVA
TDSEDDEEEEASDDMFQSAAEEEDDEDGYSPPAKARGKAKAKPEAKAAAA
AKPAAAKRGTKSKVQKEPVQADHSDACEVVEPLPPAAKPAGKKPAAKAKA
AAKPVQASDSEDDIFNMDDSDDNAKTPPKAKTKGRAVTKAKGKAVAAKSK
AKAPAKAKSPPKAKGVKRGSRMSFSDEDEVFSPDKMSPAAKRLSQKATPA
ASRLRPTKAVGVEDSDDEGSADENDSENDSDSDVQEVIKTPRPARSRAGR
GQKVVYADLDSEESEEEASDDDDDDESEFEG*
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