mRNA_S-dermatodea_contig1290.1765.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1290.1765.1
Unique NamemRNA_S-dermatodea_contig1290.1765.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1290.1765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1290contigS-dermatodea_contig1290:3926..4513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924266.5745368-CDS-S-dermatodea_contig1290:3925..39851622924266.5745368-CDS-S-dermatodea_contig1290:3925..3985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1290 3926..3985 +
1694079136.9812927-CDS-S-dermatodea_contig1290:3925..39851694079136.9812927-CDS-S-dermatodea_contig1290:3925..3985Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1290 3926..3985 +
1622924266.583972-CDS-S-dermatodea_contig1290:4399..45131622924266.583972-CDS-S-dermatodea_contig1290:4399..4513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1290 4400..4513 +
1694079136.9991784-CDS-S-dermatodea_contig1290:4399..45131694079136.9991784-CDS-S-dermatodea_contig1290:4399..4513Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1290 4400..4513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1290.1765.1prot_S-dermatodea_contig1290.1765.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1290 3926..4513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1290.1765.1

>prot_S-dermatodea_contig1290.1765.1 ID=prot_S-dermatodea_contig1290.1765.1|Name=mRNA_S-dermatodea_contig1290.1765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
RRRSSQNNATATMRLSISDAGKERHEEEKDRQESADKARNQRRKSSLLQA
SGHRTQL*
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mRNA from alignment at S-dermatodea_contig1290:3926..4513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1290.1765.1 ID=mRNA_S-dermatodea_contig1290.1765.1|Name=mRNA_S-dermatodea_contig1290.1765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig1290:3926..4513+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCAGAAGCTCGCAGAACAACGCCACGGCGACGATGCGTTTGAGTAT
TTCAGACGCCGTCAACACCCAGGCGAGATTACAATTGAAGCCAATCGGCA
TGATGGCGAATTAGCGACGGTAGTGCACTGTCATATCCCAACCCAAACGT
TAAACCACGGCGGTTGTGATTAGAGGTTTTCGTTGGAACTCGCATATCAC
GATCGAGGTTTTGATCTACGCCAGGGGAAAGTAGCGGAACTGAAGCCCGA
CGAGTTATACGACGACTGCTGCTACCGCCGAAAGGCTGACGGACCAACGG
ACCAATCAAGCCACGAAACAACATTCGCAGGCCAATCAATTGTCCCTGTT
CATCACTCACGGATGCGTCCAATCGATCCGTCCCTCAACTCGTAAGACAC
AAGCCATCCGCTCACTCCCACAAACCAGACCAGTCAACACACACAAAAGA
ACACCAGTAAATTCACCGACGCAGGGGAAAGAGCGACACGAGGAGGAGAA
AGATCGGCAGGAGAGCGCCGACAAAGCTAGGAATCAGCGCCGAAAGAGCT
CCTTACTGCAGGCGAGTGGTCATCGAACGCAATTATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1290:3926..4513+

>mRNA_S-dermatodea_contig1290.1765.1 ID=mRNA_S-dermatodea_contig1290.1765.1|Name=mRNA_S-dermatodea_contig1290.1765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig1290:3926..4513+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCAGAAGCTCGCAGAACAACGCCACGGCGACGATGCGTTTGAGTAT
TTCAGACGCCCGCCGCAGAAGCTCGCAGAACAACGCCACGGCGACGATGC
GTTTGAGTATTTCAGACGCCGGGAAAGAGCGACACGAGGAGGAGAAAGAT
CGGCAGGAGAGCGCCGACAAAGCTAGGAATCAGCGCCGAAAGAGCTCCTT
ACTGCAGGCGAGTGGTCATCGAACGCAATTATAGGGGAAAGAGCGACACG
AGGAGGAGAAAGATCGGCAGGAGAGCGCCGACAAAGCTAGGAATCAGCGC
CGAAAGAGCTCCTTACTGCAGGCGAGTGGTCATCGAACGCAATTATAG
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