mRNA_S-dermatodea_contig9593.17610.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9593.17610.1
Unique NamemRNA_S-dermatodea_contig9593.17610.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A6H5KK56_9PHAE (Protein kinase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK56_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 4.320e-106
Identity = 177/308 (57.47%), Postives = 213/308 (69.16%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSIVGSKTYMAPEVLGRRDG-TYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYV-ARQPRRFPF-RQSGDDPLRNLREVMSSRYEHAMAS 915
            VKRAID   G+ VALK+M +L P DP   ++ +RL  EV AM++ G H+H V+L++A F+  YP+RN     A ILVLELCEKGELF+LL + G     + +EYFRQLM G+ +CH+N + HRDLKPENLLLD DF+LKIADFGFAA  R    C SIVGS+TYMAPEVL       Y  + AYD  KADVWS GVILFTMLAGHPPMEKA+ SDWWFRAL+  R DLFW+SH+ T A P PEDAK LI  +L V+P  RI+V +IM   YV A    R PF +   +DP   LRE M   YE +MAS
Sbjct:  244 VKRAIDVQNGKMVALKVMDRLDPRDPSFHRRSSRLNDEVHAMRRCGSHEHTVSLIEAMFDTTYPRRNGELTNAPILVLELCEKGELFELLSQPGGFPPVVCKEYFRQLMCGVKFCHDNGVCHRDLKPENLLLDADFTLKIADFGFAALGRERMNCSSIVGSRTYMAPEVLKLGQSYAYGDDAAYDATKADVWSSGVILFTMLAGHPPMEKANESDWWFRALKLSRQDLFWQSHQNT-APPLPEDAKHLIQAMLTVNPAHRINVDQIMNHPYVVAASASRGPFWKGRPEDPRAVLREKMQELYEQSMAS 550          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: D7FU86_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU86_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 9.880e-105
Identity = 172/297 (57.91%), Postives = 206/297 (69.36%), Query Frame = 1
Query:   28 GEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSIVGSKTYMAPEVLGRRDG-TYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYVARQPRRFPFRQSGDDPLRNLREVMSSRYEHAMAS 915
            GE VALK+M KL P DP   ++ +RL  EVLAM++ G H+H V+L+ A F+A YP+RN     A ILVLELCEKGELF+LL + G     + +EYFRQLM G+ +CH+N + HRDLKPENLLLD DF+LKIADFGFAA  R    C SIVGS+TYMAPEVL       Y  + AYD  KADVWS GVILFTMLAGHPPMEKA+ SDWWFRAL+  R DLFW+SH+ T A   PEDAK LI  +L V+P  RI+V +IM   YV   PR   ++   +DP   LRE M   YE +MAS
Sbjct:  177 GETVALKVMDKLDPRDPSYYRRSSRLNDEVLAMQRCGSHEHTVSLIRAMFDATYPRRNGDLTNAPILVLELCEKGELFELLSQPGGFPPIVCKEYFRQLMCGVKFCHDNGVCHRDLKPENLLLDSDFTLKIADFGFAALGRERMICSSIVGSRTYMAPEVLNLGQSYAYGDDAAYDATKADVWSSGVILFTMLAGHPPMEKANESDWWFRALKLGRQDLFWQSHQNT-APLLPEDAKHLIQAMLTVNPAHRINVDQIMNHPYVVAAPRGAFWKGRPEDPRAVLREKMQELYEQSMAS 472          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A7S2WUS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUS7_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.130e-59
Identity = 113/273 (41.39%), Postives = 164/273 (60.07%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIM--YKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYV 813
            VK      +GE VALK++   KL+P      ++   L+ E+ AM+   +H + + L   ++ A YPK+        +LVLEL   GELFD L   G +G  +++ YFRQL++ +  CH   + HRDLKPENLLLD  F LK+ADFG AA +   + C +  G+++YMAPEV+ R+         YDGAKAD+WS GV+LF MLAG+PP  +A  +DWWF A+R  R D FW +H R+ A  FP+ A+  ++RI V D   R ++ E+ +  ++
Sbjct:    5 VKLGTHITSGEQVALKLIDRTKLTP------RQTEMLEREIQAMQAV-QHPNTLLLRHVEWVAQYPKKRGGFREVVLLVLELGTGGELFDYLMYTGPLGEQVARSYFRQLLSALEVCHSQGVYHRDLKPENLLLDGSFQLKLADFGLAAINCDDHLCATECGTRSYMAPEVMSRQP--------YDGAKADIWSAGVVLFIMLAGNPPFAQAGGNDWWFTAIRHNRYDKFWMAHLRS-APDFPKLAQEFLNRIFVADSGNRATIEELWQHPWL 261          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: D7G6D0_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.660e-58
Identity = 114/273 (41.76%), Postives = 163/273 (59.71%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNA-CLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYVA 816
            VK  +D  TGE VA+KIMYK    D  S +   +L+ E+ +MK    H +++ L D   +  Y K+N       ILVLEL   GELFD +   G     I++ YF Q+++ +  CH   I HRD+KPEN+LLD++F L++ADFG ++     N  C +  G+++YMAPEVL ++         YDGA+AD+WS GV+LF MLAG+PP + A S+DWWFRA+   R D FW +H R     FP  A+  ++RI V DP QR ++ E+    ++A
Sbjct:   31 VKLGVDLRTGETVAVKIMYK----DNMSARAAQQLRREITSMKALD-HPNVLRLKDVHESLTYVKKNGLEKEVVILVLELAVGGELFDFMMYTGAFPEVIARTYFCQMLSALEMCHSTGIAHRDIKPENILLDNNFQLRMADFGLSSIMEDENGVCYTECGTRSYMAPEVLAKQP--------YDGAQADLWSAGVVLFIMLAGNPPFQMAVSTDWWFRAVSSGRHDRFWAAHLRG-CPDFPPLAQAFLNRIFVADPLQRATLEELKSHEWLA 289          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A6A7G7B6_9CRUS (CBL-interacting serine/threonine-protein kinase n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7B6_9CRUS)

HSP 1 Score: 201 bits (512), Expect = 1.710e-57
Identity = 118/271 (43.54%), Postives = 159/271 (58.67%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYK---LSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSI-VGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMR 801
            VK  ID+ TG+  ALKI+ K   +  D    Q     ++ E+ AM K  +H++++ LLD  F+A YPK +   V   ++VLEL   GE FD L   G     IS+E+FRQL+ G+  CH N + HRD+KPENLLLD  F LKIADFGF+      N  ++   G+K YMAPE+L          H +   K D+++ GV+LF MLAG PP + A  SDWWF  L   R  LFW++H RT    F E AK LI R+L  DP +RI++ +IM+
Sbjct:   21 VKLGIDSETGQKAALKILIKNRFILQDTALRQ-----VKAEIQAMSKI-QHENVIRLLDYSFDAQYPKSDGTVVDVMLVVLELASGGEFFDFLSYTGRFPEPISREFFRQLIGGLEACHLNGVAHRDVKPENLLLDDQFRLKIADFGFSKVLSSDNDTMATECGTKGYMAPEIL---------MHNHYTMKTDIFACGVVLFIMLAGFPPFQIATRSDWWFHKLLVGRHGLFWQAHSRTAQ--FSETAKDLIQRLLEPDPEKRITLTQIMK 274          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A067D094_SAPPC (CAMK protein kinase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D094_SAPPC)

HSP 1 Score: 200 bits (509), Expect = 3.810e-57
Identity = 111/265 (41.89%), Postives = 156/265 (58.87%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEI 795
            VK  +D  TGE VALK++   S     S K    L  E+ AMK+  +H +++ LL  K +  YPK+   +    ++VLEL   GELFD +   G+   +I++ YFRQL+AG+  CH NN+ HRD+KPENLL+DH + L+IADFG +A     +  L+  G+++YM+PEVL          + Y+GA ADVWS GV+LF +LAG PP + A   DWWFRA   ++   FW +H RT    F   A  L++RI       RI++ EI
Sbjct:   22 VKLGVDIKTGEAVALKLIKAESL----SNKACHNLFREIEAMKRV-QHPNVLRLLAVKKDVEYPKKKGGSQKVVLVVLELASGGELFDFMMYTGSFSEEIARTYFRQLVAGLHACHSNNVFHRDIKPENLLMDHSYLLRIADFGLSALGDQSSELLTQCGTRSYMSPEVLS--------GNPYEGAPADVWSAGVVLFILLAGFPPFQIATRQDWWFRACAMKQYQAFWAAHARTAV--FSPMAMDLLTRIFDTSAATRITLPEI 271          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A835YM93_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM93_9STRA)

HSP 1 Score: 203 bits (516), Expect = 9.320e-57
Identity = 110/265 (41.51%), Postives = 161/265 (60.75%), Query Frame = 1
Query:   25 TGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRA-AVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGN-ACLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYV 813
            +GEYVALK++ K +     S +   ++  E++A++    H H++ L D  + A  P  + A +  + +LV ELC  GELFDL+   G     +++ YF QL   IS CH   + HRDLKP+N+LLD +F LK+ADFG +A    GN  C +  G+++YMAPE+L           AY G KAD WSVGV+LF +LAG PP+  A   DWWF+AL  RR D FW++HE+ +   FP  A+ ++SR+LV +P +R  V E++ D ++
Sbjct:  130 SGEYVALKVIDKHNL----SLRYQEQINREIVALRSVS-HPHVLRLRDVVYEARLPSSDPAQSRDSCVLVTELCTGGELFDLMLYLGGFPEPVARTYFVQLAGAISACHAAGVYHRDLKPQNILLDANFQLKVADFGLSALHAAGNDLCYTYCGTRSYMAPEILA--------GAAYSGGKADAWSVGVLLFILLAGSPPLRSATVDDWWFKALLLRRADKFWQAHEQ-MTPAFPRSAQGIVSRLLVAEPAERAHVDELVDDPWL 380          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A1V9Z6T2_9STRA (CBL-interacting serine/threonine-protein kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6T2_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.020e-55
Identity = 106/271 (39.11%), Postives = 157/271 (57.93%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYV 813
            VK  +D  TGE VALK++      D  S K    L  E+ +MK+  +H +++ LL  K +  YPK+    +   ++VLEL   GELFD +   G+   +I++ YFRQL++G+  CH   + HRD+KPENLLLD ++ L+IADFG +A        ++  G+++YM+PEVL            Y+GA ADVWS GV+LF +LAG PP + A   DWWFRA   ++   FW +H RT    F   A  L++RI   +P  R+++ EI +  ++
Sbjct:   22 VKLGVDLKTGEAVALKLIKA----DTLSNKACHNLFREIESMKRV-QHPNVLRLLAVKKDVEYPKKKGGVMKVVLVVLELASGGELFDFMMYTGSFSEEIARTYFRQLVSGLHECHSKQVFHRDIKPENLLLDQNYILRIADFGLSALGDQSTELMTQCGTRSYMSPEVLS--------GSPYEGAPADVWSAGVVLFILLAGFPPFQIATRQDWWFRACAMKQYHAFWAAHSRTAV--FSPMAMDLLTRIFDTNPASRLTLPEIWQHPWM 277          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A8K1C926_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C926_PYTOL)

HSP 1 Score: 194 bits (493), Expect = 2.410e-54
Identity = 114/275 (41.45%), Postives = 161/275 (58.55%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAAT-DRPGNACLSIV---GSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEIMRDSYV 813
            VK  I+T T E VALKI+     +    +K    +  EV AM +  +H +++ LL    +  Y K+N       ++VLEL   GELFD +   G     I++ YF+QL++G+  CH+N + HRD+KPENLLLD  F+LKIADFG +   + P  A   +    G+++YM+PEVL       P    Y+G  ADVWSVGV+LF MLAG PP + A   DWWFRA   ++ + FW +HER+    F   AK L++RI  V+P +RI++ EI  D +V
Sbjct:   45 VKLGINTETQERVALKIIDTAKLN----RKAMVNVYREVEAMSRV-QHPYVLRLLGVFDDLPYVKKNGTTKQVILIVLELATGGELFDFMMYTGCFSESIARAYFQQLVSGLEACHQNGVYHRDIKPENLLLDDQFALKIADFGLSGLREGPNGAIFELYTQCGTRSYMSPEVL----SCMP----YEGEPADVWSVGVVLFIMLAGFPPFQIATRQDWWFRACAAKQYEAFWAAHERSAT--FSPGAKALLTRIFSVNPQERITLQEIKSDPWV 304          
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Match: A0A1V9Z432_9STRA (CBL-interacting serine/threonine-protein kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z432_9STRA)

HSP 1 Score: 192 bits (487), Expect = 8.940e-54
Identity = 108/265 (40.75%), Postives = 153/265 (57.74%), Query Frame = 1
Query:    1 VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQHMVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDISQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDRPGNACLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTMLAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISRILVVDPFQRISVAEI 795
            VK  ID  TGE VALK++   S     S K    L  E+ +MK+  +H +++ LL  K +  Y K+        ++VLEL   GELFD +   G    +I++ YFRQL++G+  CH NN+ HRD+KPENLLLDH + L+IADFG +A        L+  G+++YM+PEVL            Y+GA AD+WS GV+LF ++AG PP + A   DWWFRA   ++   FW +H RT    F   A  L++RI   +P  R+++ EI
Sbjct:   39 VKLGIDLKTGEAVALKLIKAESL----SNKACHNLFREIESMKRV-QHPNVLRLLAVKKDVEYAKKKGGFQKVVLVVLELASGGELFDFMMYTGRFSEEIARTYFRQLVSGLHACHANNVFHRDIKPENLLLDHQYILRIADFGLSALGDQSPELLTQCGTRSYMSPEVLS--------GVPYEGAPADIWSAGVVLFILIAGFPPFQIATRQDWWFRACSMQQYQAFWAAHARTAI--FSPMAMDLLTRIFDTNPATRLTLPEI 288          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9593.17610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK56_9PHAE4.320e-10657.47Protein kinase domain-containing protein (Fragment... [more]
D7FU86_ECTSI9.880e-10557.91Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2WUS7_9STRA2.130e-5941.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7G6D0_ECTSI2.660e-5841.76Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6A7G7B6_9CRUS1.710e-5743.54CBL-interacting serine/threonine-protein kinase n=... [more]
A0A067D094_SAPPC3.810e-5741.89CAMK protein kinase n=2 Tax=Saprolegnia TaxID=4769... [more]
A0A835YM93_9STRA9.320e-5741.51Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A1V9Z6T2_9STRA4.020e-5539.11CBL-interacting serine/threonine-protein kinase n=... [more]
A0A8K1C926_PYTOL2.410e-5441.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9Z432_9STRA8.940e-5440.75CBL-interacting serine/threonine-protein kinase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9593contigS-dermatodea_contig9593:3592..7930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.4
Seed ortholog evalue2.2e-88
Seed eggNOG ortholog2880.D7FU86
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0588@1,KOG0588@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size917
Cds size915
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9593.17610.1prot_S-dermatodea_contig9593.17610.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9593 3593..7930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925418.4835627-CDS-S-dermatodea_contig9593:3592..37311622925418.4835627-CDS-S-dermatodea_contig9593:3592..3731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 3593..3731 -
1694079920.4552846-CDS-S-dermatodea_contig9593:3592..37311694079920.4552846-CDS-S-dermatodea_contig9593:3592..3731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 3593..3731 -
1622925419.434044-CDS-S-dermatodea_contig9593:4180..42931622925419.434044-CDS-S-dermatodea_contig9593:4180..4293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 4181..4293 -
1694079920.4678857-CDS-S-dermatodea_contig9593:4180..42931694079920.4678857-CDS-S-dermatodea_contig9593:4180..4293Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 4181..4293 -
1622925419.4509268-CDS-S-dermatodea_contig9593:5016..51181622925419.4509268-CDS-S-dermatodea_contig9593:5016..5118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 5017..5118 -
1694079920.4787624-CDS-S-dermatodea_contig9593:5016..51181694079920.4787624-CDS-S-dermatodea_contig9593:5016..5118Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 5017..5118 -
1622925419.465187-CDS-S-dermatodea_contig9593:5349..54931622925419.465187-CDS-S-dermatodea_contig9593:5349..5493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 5350..5493 -
1694079920.4873238-CDS-S-dermatodea_contig9593:5349..54931694079920.4873238-CDS-S-dermatodea_contig9593:5349..5493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 5350..5493 -
1622925419.4746757-CDS-S-dermatodea_contig9593:6078..61461622925419.4746757-CDS-S-dermatodea_contig9593:6078..6146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 6079..6146 -
1694079920.49785-CDS-S-dermatodea_contig9593:6078..61461694079920.49785-CDS-S-dermatodea_contig9593:6078..6146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 6079..6146 -
1622925419.48764-CDS-S-dermatodea_contig9593:6666..68021622925419.48764-CDS-S-dermatodea_contig9593:6666..6802Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 6667..6802 -
1694079920.507863-CDS-S-dermatodea_contig9593:6666..68021694079920.507863-CDS-S-dermatodea_contig9593:6666..6802Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 6667..6802 -
1622925419.500656-CDS-S-dermatodea_contig9593:7084..71831622925419.500656-CDS-S-dermatodea_contig9593:7084..7183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 7085..7183 -
1694079920.5180917-CDS-S-dermatodea_contig9593:7084..71831694079920.5180917-CDS-S-dermatodea_contig9593:7084..7183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 7085..7183 -
1622925419.514021-CDS-S-dermatodea_contig9593:7816..79301622925419.514021-CDS-S-dermatodea_contig9593:7816..7930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 7817..7930 -
1694079920.5290446-CDS-S-dermatodea_contig9593:7816..79301694079920.5290446-CDS-S-dermatodea_contig9593:7816..7930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9593 7817..7930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9593.17610.1

>prot_S-dermatodea_contig9593.17610.1 ID=prot_S-dermatodea_contig9593.17610.1|Name=mRNA_S-dermatodea_contig9593.17610.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=305bp
VKRAIDTFTGEYVALKIMYKLSPDDPGSQKKFTRLQGEVLAMKKYGRHQH
MVTLLDAKFNAIYPKRNRAAVPAHILVLELCEKGELFDLLCRGGTVGHDI
SQEYFRQLMAGISYCHENNIMHRDLKPENLLLDHDFSLKIADFGFAATDR
PGNACLSIVGSKTYMAPEVLGRRDGTYPPNHAYDGAKADVWSVGVILFTM
LAGHPPMEKADSSDWWFRALRFRRLDLFWESHERTVATPFPEDAKRLISR
ILVVDPFQRISVAEIMRDSYVARQPRRFPFRQSGDDPLRNLREVMSSRYE
HAMAS
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mRNA from alignment at S-dermatodea_contig9593:3592..7930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9593.17610.1 ID=mRNA_S-dermatodea_contig9593.17610.1|Name=mRNA_S-dermatodea_contig9593.17610.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4339bp|location=Sequence derived from alignment at S-dermatodea_contig9593:3592..7930- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGAAGAGGGCGATCGACACCTTCACTGGCGAGTATGTGGCGCTCAAGAT TATGTACAAGTTGTCGCCCGATGACCCGGGCAGCCAGAAAAAGTTCACTC GCCTGCAAGGAGAGGTGAGCCCTTTCAAGCAGATAAAGAGGCGGGGCGGC CGGGGGAGGGGGGGGGGGGGTACGTTATTCTCTTTATTTTAAGTTGGAAG CCTGGCATGCACGATCCAAAATCCATGTAGGACGACATTGGCAATAAAGG ATGGGCCTAACGCCTCGACGCTCATGCCTTAAAACAATAGTGGGCGTGCT GAGAGCGGGTTGGCTTTCGGTTGCTGTCTGCTTGCGTGCGCGGTTTTGGA AAGGATCGGAGCTGCCGTAGTAGTCTTGGCGCAGATACCACCAACTGCTG GACCTTTGCATGTAGTCAAGTTTCCGCTCAACTATTATAGCTCGCGTGCA GACCCCCTCGGGATGAGCAACACGGCAATTTATTTGGAAACGTTGTAATG CTCGAAGAAGCGAGCAAGAGCACCGAGAGAAGAGGCATGCTCGTGTTTTT CGGAGAGGTACAACCCCGAGCATAAAGGCTTGCTGTAGCCGGGGGCAGGG GGTCGACGGCTGGCTGGAATCGCCTCGGCCACGGTAGAGCGCCCGATCTA GGGGCGCATCCCGTGCCCCCCTCAGGGAGTGAGATTTCTGACGGTACTCC CCGTTTCCCCCCTTGTCGTTTCTCACCCTCGCCCTCGAACGAGCCAGGTC CTGGCGATGAAGAAATACGGCCGACACCAGCACATGGTGACGCTCCTCGA CGCGAAGTTCAACGCGATATATCCTAAGCGGAACCGCGCTGCGGTGGTGA GCCCGACTTTTTTTTTCCTTTTTCTTTGGCAGCTGGCGCTGCCGCCCGGC GCCAATATTCCCCAGTCCCCGTCCCCGCCTCTTTTTGTCAGTATCAGTTG CAGCAGGCACTGCCGCCCGCCGTTCCACCCACAATGCAGCGCGAAGTCTC CGCAAAGTCCGCGGGCCATGACCATCGCCATCATACCTCACAGCTCTCGA CATCATGGCACGAAAACGAACACCCTGTGTTTTTTGTTTTTGTTTTTTGC TTTTTCCCGTGATTTTTTGGACACGCAGCCGGCGCACATCTTGGTTCTAG AGCTGTGCGAGAAGGGCGAGCTGTTCGACCTGCTCTGCAGGGGCGGGACC GTGGGGCACGACATCAGCCAGGAGTACTTCCGCCAGCTGATGGCCGGGAT TAGCTACTGCCACGGTGCGTTCCCACTCGGCCTGTGCTCGCAAAAGTGTA TTGGCGTGTTTTGCCCGGTACGCTTTCAGACACGGCGCCGCATGGCGAGT CGTGTGCCATGCGTCAGAGGAAGTGCTGGCGGGTACTTCGCGGCAACATT GACGCTTGCTCTGCCGACGGGAAGGTTCTAGCAGCGCCGAAAAGGATGCT ACTACTTGGGTCGAAAAGCAAGGGAGCTAGCTGGCCGACCTCAAATTTGG TCCTTATTGTAGTGTGTGTGTGGGTCTCCTCGTTCGTCGTGTGACGCTCT AACGCTTTTTCCTTCGAGAACGATGGGGGTCACAACCGAGTTCGAGCAGA GATTTTTGTACAGTTGTCCCCTCTCTTTCTGCTTGAACGTGTTTGTATTT TGTACCAGTACATTTAGAGGTATACCTGCTCGGCCACGCACTGATGGCAC TCCCCCGTCCTGGCTTCTATGTATTTTGTGCGTGCTCGTTTCTTTTTCGC GCTTGTATCGTTTTCTTGTTTCTTGTTCTTGCAGAAAATAACATCATGCA CCGCGATCTGAAGCCCGAGAACCTCCTCCTCGACCACGACTTCTCGCTCA AGGTGCCGTCCACGGAACTCGGTTGGTTAGCATTTGCTCGGTGCCTCTTA AACGGTAGCTGTTCGGGCGCGTGTGATTGTTCAGATGTTAAGCCATTCGG GCGACCCTGCTCCGCTGACTTGCTCTCTACGTTTGACCAGCCACCCCTAT TTGCTGTTTTTTCGCGTTAGCTGATTCGCTACTAATATATGAATTCCGCA GTGGTCACGGTGATAAAATGGATAACTTCCAGGAAACCGTTACTACGTAG TAGGCGATTTGGGGTCAGGGTAGGGTAAATGTACGGGTGCTTTCCGTCCG GGGCGTTGGGCTTCTTGAAGCCTTGGAAGGGCGCGAACAACCAGGGCGCT ATTGTCGTACCAGTAGAGTCGAAACCGACCGAGCGGCAGCTGTACGGCCG ACGGCACGCACTTGTGCGGCTTCCATGGAGCCACTCCTGTATTTTCCCCG AACACCTCAAAAACGAGTTGTCAAAACTTGGCCCTTTCTCTCTTCTCTCT TCTTTCTTGTCTCTTCTAACAATCGCTGTCCCCGCGTAATTTCTCGCTGT CGATATTTCGTACGAATGTGCGAACCTGCCAACACAGATCGCGGACTTTG GGTTCGCGGCGACGGACCGGCCGGGCAATGCTTGCCTGAGCATCGTCGGT TCGAAGACGTACATGGCCCCCGAGGTGCTGGGTCGCAGAGACGGCACCTA CCCCCCCAATCACGCGTACGATGGGGCGAAGGTGAGAGATAAACTGGGCC GGACAGGGTGTCACTCTATGTCTGCAGCGAACGTTTGCGTTGTTTTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCCTCATCGTGTTCTGTT TTCTTTGCACTTTTCACCGTGACGGGGAAGACTTCGCGAGAGAAACAACG CCTCCGCGAAACTGAAAACCCGCTTTTAACTGCTCGGACGCGCGCGGCTT GCACATCGCCAGGCTGACGTGTGGAGCGTTGGGGTGATCCTTTTCACGAT GCTCGCGGGTCACCCCCCTATGGAGAAGGCGGACTCGTCGGACTGGTGGT TCCGTGCCCTGAGAGTGAGTCATGTTTGGGTTGTGGCTTGTTGAGGTTGT GCCTGCAGTCCTCTTCGCTGCTGCCGCTAAATACTGCTGTCTGATTTACC TGCTGCTGATGGCTTTTCTGATGGGTTTCACGCCTGACCTCAATCACTAC AGGGCTAACGCTAATCCAGCCGTTTTCGCCGCGACGCACGGGAGTCAAGG CGTCGAAGACGTAAAGGCGAAAGCAGATTGTTATTTTTCCTCTTCTTTTT TTTTCTTGCTTCTTGTGTGGACGGCGCCAGATCAGCCTCTCTCCGATGCG ATTTAAGTGTTGTTTTGTGTCAAATTCAGACCCCTAATGTCCGTGGTCGC AAGAGACCCTAGCCCACCCCCTACCGGCACGCCCCTGTGATCTTGCATCG GACATTGGGGGGTCGGCTCTCCCGCAGCTCAGCTACTCGCTGGCCGATCT GTGCTTTCTCCAGTTTTCGATTTCCCCCGTACATTTGCCTTCATACCGGC ACATACCTTTCGTCAAACCAGCTCAACCTATGATACTTGTATAATAAAAA CAGCTCGCAGGCTTTGCCCATGTCTATATTGTATACCACATGTCAGTCCG GGAACGTTGGAACCACTGCTTTGGATGTTGATGCAGTACATGCACTTGTT GGTATATAGTTGACACACGTATCAAATTCTAACAAGCACCCCCTGAAAAA AATTGCTCGCCTTTTCTCTGTCGCGCCCGCTGTGCAGTTCCGCAGGCTAG ATCTGTTCTGGGAGAGCCACGAGCGCACAGTCGCTACCCCATTCCCCGAA GACGCGAAGCGTCTGATTTCCAGGATACTCGTGGTCGATCCTTTCCAGCG GTGAGTGATCAGAGATGAGCGGCCACAGCCCACGGGCGGCTTCTGCACGG GCGGCTTGCCCCCGCGAGTTGCTGTCGGGCCGACGGGAAAAGCAGAGAGC CATGGTACCCGCTGTATTCGGACAGATACCCTAAAATGTAACGCCCGCGG CGAGCAGGAGGACTCCGGCGATGGCCACGTGTTTCGCCAGTGTGGAGCAG TCCCTGGCACGTTCACTGTCATCGTGCGTACTCGTTTTGTCGCCTAAGGC GCGTGCTGTGATATGAACCGGTTCCGGGGGAGGGGGGGGGGGCAGATCTC GACGTATCACAAGTACTCGGAGTCGAAGACGAGACGAGGAGCGTGTCGCT ACCGTATGTATCGTCGATGAGAACACGAGCGCCCAGCTACAAGATAGTCA CGCACACGGTGTAAACCACACCCCCCTCTTCCACTCGTGCCGCCCGCAGA ATCTCGGTCGCGGAAATCATGCGCGACAGCTACGTAGCGCGCCAACCTCG ACGCTTCCCGTTCCGCCAGAGCGGCGACGACCCGCTGCGCAACTTGCGCG AGGTGATGAGCAGCCGGTACGAGCACGCTATGGCCTCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9593:3592..7930-

>mRNA_S-dermatodea_contig9593.17610.1 ID=mRNA_S-dermatodea_contig9593.17610.1|Name=mRNA_S-dermatodea_contig9593.17610.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at S-dermatodea_contig9593:3592..7930- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGAAGAGGGCGATCGACACCTTCACTGGCGAGTATGTGGCGCTCAAGAT
TATGTACAAGTTGTCGCCCGATGACCCGGGCAGCCAGAAAAAGTTCACTC
GCCTGCAAGGAGAGGTGAAGAGGGCGATCGACACCTTCACTGGCGAGTAT
GTGGCGCTCAAGATTATGTACAAGTTGTCGCCCGATGACCCGGGCAGCCA
GAAAAAGTTCACTCGCCTGCAAGGAGAGGTCCTGGCGATGAAGAAATACG
GCCGACACCAGCACATGGTGACGCTCCTCGACGCGAAGTTCAACGCGATA
TATCCTAAGCGGAACCGCGCTGCGGTGGTCCTGGCGATGAAGAAATACGG
CCGACACCAGCACATGGTGACGCTCCTCGACGCGAAGTTCAACGCGATAT
ATCCTAAGCGGAACCGCGCTGCGGTGCCGGCGCACATCTTGGTTCTAGAG
CTGTGCGAGAAGGGCGAGCTGTTCGACCTGCTCTGCAGGGGCGGGACCGT
GGGGCACGACATCAGCCAGGAGTACTTCCGCCAGCTGATGGCCGGGATTA
GCTACTGCCACGCCGGCGCACATCTTGGTTCTAGAGCTGTGCGAGAAGGG
CGAGCTGTTCGACCTGCTCTGCAGGGGCGGGACCGTGGGGCACGACATCA
GCCAGGAGTACTTCCGCCAGCTGATGGCCGGGATTAGCTACTGCCACGAA
AATAACATCATGCACCGCGATCTGAAGCCCGAGAACCTCCTCCTCGACCA
CGACTTCTCGCTCAAGAAAATAACATCATGCACCGCGATCTGAAGCCCGA
GAACCTCCTCCTCGACCACGACTTCTCGCTCAAGATCGCGGACTTTGGGT
TCGCGGCGACGGACCGGCCGGGCAATGCTTGCCTGAGCATCGTCGGTTCG
AAGACGTACATGGCCCCCGAGGTGCTGGGTCGCAGAGACGGCACCTACCC
CCCCAATCACGCGTACGATGGGGCGAAGATCGCGGACTTTGGGTTCGCGG
CGACGGACCGGCCGGGCAATGCTTGCCTGAGCATCGTCGGTTCGAAGACG
TACATGGCCCCCGAGGTGCTGGGTCGCAGAGACGGCACCTACCCCCCCAA
TCACGCGTACGATGGGGCGAAGGCTGACGTGTGGAGCGTTGGGGTGATCC
TTTTCACGATGCTCGCGGGTCACCCCCCTATGGAGAAGGCGGACTCGTCG
GACTGGTGGTTCCGTGCCCTGAGAGCTGACGTGTGGAGCGTTGGGGTGAT
CCTTTTCACGATGCTCGCGGGTCACCCCCCTATGGAGAAGGCGGACTCGT
CGGACTGGTGGTTCCGTGCCCTGAGATTCCGCAGGCTAGATCTGTTCTGG
GAGAGCCACGAGCGCACAGTCGCTACCCCATTCCCCGAAGACGCGAAGCG
TCTGATTTCCAGGATACTCGTGGTCGATCCTTTCCAGCGTTCCGCAGGCT
AGATCTGTTCTGGGAGAGCCACGAGCGCACAGTCGCTACCCCATTCCCCG
AAGACGCGAAGCGTCTGATTTCCAGGATACTCGTGGTCGATCCTTTCCAG
CGAATCTCGGTCGCGGAAATCATGCGCGACAGCTACGTAGCGCGCCAACC
TCGACGCTTCCCGTTCCGCCAGAGCGGCGACGACCCGCTGCGCAACTTGC
GCGAGGTGATGAGCAGCCGGTACGAGCACGCTATGGCCTCGAATCTCGGT
CGCGGAAATCATGCGCGACAGCTACGTAGCGCGCCAACCTCGACGCTTCC
CGTTCCGCCAGAGCGGCGACGACCCGCTGCGCAACTTGCGCGAGGTGATG
AGCAGCCGGTACGAGCACGCTATGGCCTCG
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