mRNA_S-dermatodea_contig9578.17596.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9578.17596.1
Unique NamemRNA_S-dermatodea_contig9578.17596.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9578.17596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9578contigS-dermatodea_contig9578:1650..6561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.7109628-CDS-S-dermatodea_contig9578:1649..19961622925417.7109628-CDS-S-dermatodea_contig9578:1649..1996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9578 1650..1996 +
1694079919.9673233-CDS-S-dermatodea_contig9578:1649..19961694079919.9673233-CDS-S-dermatodea_contig9578:1649..1996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9578 1650..1996 +
1622925417.7238357-CDS-S-dermatodea_contig9578:6500..65611622925417.7238357-CDS-S-dermatodea_contig9578:6500..6561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9578 6501..6561 +
1694079919.983416-CDS-S-dermatodea_contig9578:6500..65611694079919.983416-CDS-S-dermatodea_contig9578:6500..6561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9578 6501..6561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9578.17596.1prot_S-dermatodea_contig9578.17596.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9578 1650..6561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9578.17596.1

>prot_S-dermatodea_contig9578.17596.1 ID=prot_S-dermatodea_contig9578.17596.1|Name=mRNA_S-dermatodea_contig9578.17596.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
QQARVPSKQATLRRLSTVRSRTRTVAACGRVRSDRRRAKAPLLVDKRGAH
ISLNMMTPALVNRALLGSSLLLAAASLAQGFVAPPAGSASSLLFSRGDAS
VGWKRSAGAAGAAGRRRPLASTMAAVAGPGDAARVV
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mRNA from alignment at S-dermatodea_contig9578:1650..6561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9578.17596.1 ID=mRNA_S-dermatodea_contig9578.17596.1|Name=mRNA_S-dermatodea_contig9578.17596.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4912bp|location=Sequence derived from alignment at S-dermatodea_contig9578:1650..6561+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCAAGCCAGAGTGCCCAGCAAGCAAGCCACCCTCCGCAGGCTCTCGAC
AGTGCGCAGCAGGACACGGACTGTTGCAGCGTGCGGGAGGGTTAGGAGTG
ATAGGCGGCGAGCAAAAGCGCCGCTCTTGGTGGACAAGAGAGGAGCTCAT
ATTTCTCTAAACATGATGACGCCAGCTCTCGTCAACAGGGCGCTGCTGGG
ATCATCGCTGCTGCTCGCTGCGGCATCGCTCGCACAGGGCTTCGTGGCGC
CCCCGGCAGGCTCTGCGAGCTCGCTCTTGTTCTCGCGCGGCGATGCATCC
GTCGGGTGGAAGAGGAGTGCTGGCGCGGCCGGGGCAGCAGGCAGGAGGTG
AGTTTGTTCAACATGATTTGAGCGGGCCTTTGTGTTTGCTCTGTAATGCT
GCTGTACACAGGTTGCTCTCCTTGGTTGCTTCAGCAGGAGGCTGAAAATG
CGTTGGGGGGTGGGTGTAGCTGGCAGGCATGCTATCAGCAGCGGGCGGCA
TTTCCTAATTTTCCTTGGCCTGTAGACGCCCTCGGCCTAGAGCCATCTCG
ACACACAAGCCCTGGTGGGGGAGGGCGTGTTTGTGTGGGAGTTTGATGGC
GCGATCGATCGACACAGCAGCAGTATGATAGTGCGGACACCAAACATGTG
TGTGCATGTGTGCATGCAATCTTGTTGCTGTTTTCGTTGGGTTGGCTGCT
TGATGGCCTCTGTTTGGCACACAAAGCAGGCTTCGACGACGCGTGGAGTT
CGGCCTCGCAAAACGTGCAATGTTGGCAGGAAAGCATGCACCACCTATCC
ATAGCTCCAGACGTTGGCGCTTGCAGCAGCGGTAGCTCCTTGGTGGGGCA
TTCCCCTCCCTCGAAAAAACCACGACAGCGACGGGGTTCTGGGGCTCATG
TTCTCGCGAAATATGCGCGCGCGGAACTCGCGCGTGTGTTGTGTTGCTAT
CTTATATTCATTCATCAATATCATGCTCGGAACGTTTTCTAATATTAATA
GCGATTTTATATAAGAGTGACCATGCCAACACAAGTTCCTCCTATTAATA
TGATACAACCGCAGAATATGTTTTTGTCCTACAAACAACTTGCGTTCGAT
TTTCGAGACCGATTTGTGATGCCAAACAGCTTGATGTTTGTGCTGGTCGC
CAAACAGCTTGATTTCAGAGACTTGAGCGACCACGCACGCACACCTCACG
GGAGCTGCCGTGGCTACCTACTTAGATGACTTGTGGCAAATCGATAAATG
CAAGCTACACAGACAACTGCTGTGTAGACTACTACCGTACCGAGTATGAT
CGTAGATAAAATAATATGGGAGTCATGATGACTCACAATTTGGAAATGGA
GTTTTTCTTGTCGCGCGATGTATACACACTATGATATCATAGTCCACCTG
TACATTTGTAGACCCCCCAGCACATACAGTATGCCTTACTGAGAGAGTAA
AGGACGTACCTAGTTTCAGTTTCCCCTGAATCAGTGCGCTCGTGAGTTAG
GGGTGTACATGGGAACTAGATTTTGTTTTTTTATAAATACGTTTTGCATG
CCCCTGTCACTGACTGCGATACCCCCCCGTATGTACCTGTAGTGACGACT
CGGCCCTACGTATAATACTATTTTATGAATACAGTACTAGCCCGCCGTTG
TGGAAAGCGCGAGAAAAATGGGGTCGTAAAAAGCCAAAGTCGGATGGAAA
TCGCCGAGCCGAGGGCGACTTTTGGTCTTGACCGCACTGCACGATAAAAA
CTTTTTACTGCACAGAAAACAGTAGTACGACAAAGCTGTTGTCAGCAGAG
AGGGAGATATGTATGGGATGACCTGATTGGTCCGTCCCTTGCTACCGCGG
ACTGTGGAGACGTGCTGTGCTGATGGCTGGAGTGGGGGGGCTAAAGGGCT
AAAGTTGTGGATGCCTTAGGCTTTACGTCATTGACCAGGCGTCGGGTGGG
GGTGTGCTTGTGTTAAATGCATGTCGTACCCGTACGGACAGAGACCACCC
GTCCCAACAATGCCGGTACGGAGTGATATGCCGGGTTTTCGCCGGCCAGG
CTGCGTTTCACAAGGATTATACCAGCTATGATACTAGCCATCACCCTTGC
GTTTGCGACGCCAAAGGATATACCATGGGTCGATCGGAAATACCGGGTAA
CCAAATGTTGAACATTCAGTGGGTGTGACTATACTCCAAGTACCGCAAAG
GGACAGTGATCACCGTGCGAATGCATAGGCTCCGCACGCACACAATATAC
ACGACGGTACGTGTGTGATTCCCTCGGACTGTGATCTGATCATGAGTACT
CCTGGCGGAGTACCATTCATAAGGCAATGGGTGCTCTAGCGGCTCCAACA
ATCCAATGTTCAGCAGGTGTCCTATAGGATGTGATGCGTTTCGCCCCTTT
GAGGAGAGACAAGACTCTTCGACCGAGGTCTCCGAGCTCACAGAACATAC
AGCATGAACCACCCCATGCCCTATAAATAGTACCAGGTAGCTGTTACAGC
CCCATGCCACAAGAGCCAACCCTACCTCGACCAACCCCACCTCAAACGTC
AAAGGCAGGGGGGGTGTAGGTTGCAGTTTCCCGTGGGGGGGGGGGGGGGG
GGGTAAATTTTTGCATGCCCGAGGTTTTGGGCGGTTGAGCGGGGGGGGGG
GGGGGGGGGGATTTNNNNNNNNNNGGGGGGGCGCCGGGGGGGGGGGTGGG
TTGGGGGGGGGTGAGTTGTGGGTGGCTGGATTCTTCTTGTTTTGTTGTGC
CCCGCGCCGGGGGGGGTTGTGTGTGGGTGTGTTGTTTTTTGGTTGTGTGG
GGGGGGGGGGGGGGGGGGGGGCTAAATTTTTGCATGCCCTAGGTTTTAGG
CGATTGACCAGGCGTCGGGCGGACGGAGCATTTGTATTTTTCTTTTTTCT
TTTGTTTTTCCCCTTTTTTTTTGCACCTACGAATATTAGTATCATACACT
AATATTAGTATGATACACCGGGTTTTCCGAGGTCCGTCTGTGTGCACAAG
GGATTGATTGATCATCCCATCTCTCTATTATCTTATCTTATCTTTTCTGA
TCTTATCTTTTCTTATCTTATCCCCGGTTCTTACATTGGGTTTTTATCGC
GAATGCTTTGAGTTCGGCACTTCCGCAGCTTGCCGATATTTATCGGATTT
TGCTTACTCACGCTGTCTCGCTTTCCGCGGCGGAGGTTGAGAAAACGAGT
GATTATCGACTCTGCCTGGATTCGAATCTAGGTCCTCCTCTCCGCCTTAC
TCGCCGTTGGTGTACTATTAATAGTTCAATGTTCCCACATAATCCATCGC
CGATGACCAATCGTTCCTTCCTACTTTGCCAAAGGTGACTAAGAATCGTT
TCCCCTCTTTAGTCTACTTCAAGTTGTTGCCTTTTCGGGCCACTTGCTCT
CATCTGCCCCCCAGTGATGCTACTGGTGTCTTCGTCTGGCTGCCCCATGC
TTCCAAAGCAGATAGATCTACTGCTGTATCGCATGTTCGCATTTTGGGTG
CTCTACAGATCAGAGGTGTAGGCTGGTTTTATGGAAGTAACGTGTTATAT
GACGATGAAGGATAGTACCGTTATAGATGCGGCGGAATAATATACAGTTT
CGTGGTGAACCGAAACATTGTAGAGGAAGGCGAGCCCCACCGAGCTGACC
TCCATACATCCAATTGCCGCGCGAGTCAAGGTTTCTAGCCTGTTGAGTTC
TCTACGAGGAGAACCAACCGTAGCGGTGGATATGAGACAGGGCTAAGGGA
GAAAATATATAAGACCATAAATAGGGATAGCATCAACTTATTTCTGGGAC
ACGCCTGAGACTTCAAGAGTCAAAAGGGGGAAGCCGTGTCATAATTCATC
GAGGATATCGGACATCGGATATCGGAGAATATCGAACATCTCGACCTTCC
GATTTTCCTCAGTTCCGTCGTGTACACCGCTCTCCTCTGTGTCGTACATG
GGCGTTCTGCCACTGCATACGCGGACACGGTCTCCCCGCTCGCGCGAACC
GCAATCACATTTGTACGTGCCCTCGTCTTTCTCGCTTTATTTCTTAACCC
TTTTGATACTATTAAGTCAGTACTATTAAATTAGTATTAATAGGGCTCTC
TGAAACGATCCAAAACTCTCTCAATGCCAGTCGACAGCTACATCGGCGTT
TTCCTTGGGCTTGGTTCTCTCTCATTCCTGCGTCATAACCCATGGGGTTC
GCCAGGGCCCCGCTTCAAGCGCGCCTCATTACGTGCTAACCGGCGCTCCA
AACAAGGGGCTAGTACCAAAGGGTTACGTATCTTACCATATGTTTTTGAA
ATAGTAACTGTATTTTCTAGGGGGTTGCCAAGGTATCCCCCAGACAAATT
AATTTTGCACATTGGCCCTACTACTGCTGTATATAAGTACATGTAAGCAT
GCATGATACAACCAGGGCATTAGACCTATAACGTAAGCCTCCATAGAGTG
GTAACCTTGGACCACATTTAGTTCCTTTTTAAAGGTGGGATCCCAACCCC
CGCTCTACATGTTTAGTTTAGTTTTTTTGTTTTGTGCCGGGGGGGAGGTT
CTAAACACCGAAACACGACAGCAGCGGCAACACACAGACACAAACTCAAC
ACGTACTTGTACAGAGTAGCATAATATGCTACGGCAGTTGTGTGTGTACA
GTTGTGTATGTATATAATATATATACAGTATATATATTTAGATGCTCAGG
CACACTCTCATCCAATCCCTTCATCCACAATGTTTTTGCTCAAAGCGCCG
TTCCTTCCCTTCCCTTCCCTTCCCCTCCCCCCTCCCTTTTCCGTAATGCT
ATATGCGGCATGCGGCATGCGCGTGTTTGATGACCTCGCCCGCTCGCTCA
GGAGACCGCTAGCGTCGACCATGGCAGCAGTGGCCGGTCCCGGGGACGCG
GCGAGGGTGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9578:1650..6561+

>mRNA_S-dermatodea_contig9578.17596.1 ID=mRNA_S-dermatodea_contig9578.17596.1|Name=mRNA_S-dermatodea_contig9578.17596.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig9578:1650..6561+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCAAGCCAGAGTGCCCAGCAAGCAAGCCACCCTCCGCAGGCTCTCGAC
AGTGCGCAGCAGGACACGGACTGTTGCAGCGTGCGGGAGGGTTAGGAGTG
ATAGGCGGCGAGCAAAAGCGCCGCTCTTGGTGGACAAGAGAGGAGCTCAT
ATTTCTCTAAACATGATGACGCCAGCTCTCGTCAACAGGGCGCTGCTGGG
ATCATCGCTGCTGCTCGCTGCGGCATCGCTCGCACAGGGCTTCGTGGCGC
CCCCGGCAGGCTCTGCGAGCTCGCTCTTGTTCTCGCGCGGCGATGCATCC
GTCGGGTGGAAGAGGAGTGCTGGCGCGGCCGGGGCAGCAGGCAGGAGCAG
CAAGCCAGAGTGCCCAGCAAGCAAGCCACCCTCCGCAGGCTCTCGACAGT
GCGCAGCAGGACACGGACTGTTGCAGCGTGCGGGAGGGTTAGGAGTGATA
GGCGGCGAGCAAAAGCGCCGCTCTTGGTGGACAAGAGAGGAGCTCATATT
TCTCTAAACATGATGACGCCAGCTCTCGTCAACAGGGCGCTGCTGGGATC
ATCGCTGCTGCTCGCTGCGGCATCGCTCGCACAGGGCTTCGTGGCGCCCC
CGGCAGGCTCTGCGAGCTCGCTCTTGTTCTCGCGCGGCGATGCATCCGTC
GGGTGGAAGAGGAGTGCTGGCGCGGCCGGGGCAGCAGGCAGGAGGAGACC
GCTAGCGTCGACCATGGCAGCAGTGGCCGGTCCCGGGGACGCGGCGAGGG
TGGTGGAGACCGCTAGCGTCGACCATGGCAGCAGTGGCCGGTCCCGGGGA
CGCGGCGAGGGTGGTG
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