mRNA_S-dermatodea_contig9577.17595.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9577.17595.1
Unique NamemRNA_S-dermatodea_contig9577.17595.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.180e-55
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1
Query:    1 EANPLLADKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLTQAVDTEVNTQLGEFTLRRHT 312
            EANPLLADKVLEGVVRVITLTGDRTG SRK DVLFKDRHWESI+RINCRGRFVPDTEVV+HQLAQQE+EG AALSYEEYLRRLTQAVDTEVNTQLGEFTLRRHT
Sbjct: 1454 EANPLLADKVLEGVVRVITLTGDRTGLSRKTDVLFKDRHWESIQRINCRGRFVPDTEVVRHQLAQQELEGSAALSYEEYLRRLTQAVDTEVNTQLGEFTLRRHT 1557          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.000e-20
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   22 DKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAA-LSYEEYLRRLTQAVDTEVNTQLGEFTLRRH 309
            D V+EGV+RVITLTGDR  A +  D  F +R W ++ R +C GRFVPD  +VQ QLA ++       +SYE++LR  TQ VD E+N QLGEFTL+RH
Sbjct: 2249 DDVMEGVIRVITLTGDRH-APQGDDTSFVNRQWTTMLRTDCIGRFVPDVALVQQQLADEQSGARHYHMSYEDWLRLTTQGVDVEINVQLGEFTLKRH 2344          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A7R9UG66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG66_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.540e-20
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    7 NPLLADKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLT-QAVDTEVNTQLGEFTLRRH 309
            NP +AD+ LE VVR++T TGDR           + R W SI+R  C GRF+PDTEV     A   V     L+YEE+LR  T +AVDTE+N QLGE+TL++H
Sbjct: 1044 NPSIADEALEAVVRIVTFTGDRNAPHDDHSGHLQARRWVSIQRQGCFGRFIPDTEVASLDEALDRVNSDGKLNYEEWLRATTTEAVDTEINVQLGEYTLKKH 1145          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.750e-17
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 EANPLLADKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAAL--SYEEYLRRLTQ-AVDTEVNTQLGEFTLRRH 309
            +ANP   D+V+E V+R +TLTG R     K +   K RHWES+ R  C GRF+PDTE+   +   + ++  A++  ++EE+LR  T  + DTEVNTQLGEFTL++H
Sbjct: 1059 QANPADCDEVMEAVIRTVTLTGKRD--IPKGEERMKSRHWESMTRQGCFGRFLPDTEL---KGVMEMIQNQASIHENFEEWLRATTTLSADTEVNTQLGEFTLKKH 1159          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.280e-12
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 EANPLLADKVLEGVVRVITLTGDR-TGA---SRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLT-QAVDTEVNTQLGEFTLRRH 309
            EANP   +K +E +V+VI+LT +R TG    S+  +     R W+S +   C GRF+PDTEV + +      E +    +EE++R +T Q+VDTE+N QLGEFTL++H
Sbjct: 1458 EANPADCNKTMEAIVKVISLTDERQTGMVTESKGDEDEMLIRSWQSPEIAGCLGRFMPDTEVSELRRCLSAAEEVR--DFEEWMRVVTTQSVDTEINVQLGEFTLKKH 1563          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A7S2PE02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PE02_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.700e-11
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 ANPLLADKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLT-QAVDTEVNTQLGEFTLRRH 309
            +NP  A++V E VVR+ T TG RT  ++  +V+   R+W SIK   C GRFVPDTE    +      +     +YE+++  +T +AV TEVN Q+GEFT++ H
Sbjct:  148 SNPDDANEVFEAVVRLATGTGTRT-KTKDGEVMKGKRNWRSIKHPTCYGRFVPDTEDKNLRDGSYR-KPKPGQTYEQWMLEVTTRAVGTEVNVQIGEFTIQNH 248          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A0L0DVD2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVD2_THETB)

HSP 1 Score: 66.6 bits (161), Expect = 1.370e-10
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    7 NPLLADKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLT-QAVDTEVNTQLGEFTLRRHT 312
            +P  A+ +LE ++RV+T  G        +      R+W S+ R  C GRFVPDTE       +  +  +   SYE++LRR+T  +V TE+N QLGEFTL+++T
Sbjct: 1205 HPPAANAILEAIIRVVTFAGSLAAVHDPSAP--PPRNWASLPRPFCSGRFVPDTE----DSLKASMAPLDGESYEDWLRRVTTDSVGTEINVQLGEFTLKKNT 1301          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A7S3JZH5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZH5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.760e-10
Identity = 48/134 (35.82%), Postives = 68/134 (50.75%), Query Frame = 1
Query:    1 EANPLLADKVLEGVVRVITLT-------------------GDRTGASRKADVLFK----------DRHWESIKRINCRGRFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLTQ-AVDTEVNTQLGEFTLRRHT 312
            EA+P     VLE +VR IT T                     R+G+ ++  V  +          +R W +++R +C GR+VPDTE +    A       A  ++E +LRR+T  AVDTEVN QLGEFTL++HT
Sbjct: 1544 EAHPAERSSVLEAIVRTITFTRQAEEESDDQALVSGKAVSSGRSGSGKEGAVAARRTTVSTSKLTERTWAAMERADCAGRYVPDTERIVVANANYV---NANENFETWLRRVTTTAVDTEVNAQLGEFTLKKHT 1674          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A0L0D658_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D658_THETB)

HSP 1 Score: 63.2 bits (152), Expect = 2.260e-9
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   19 ADKVLEGVVRVITLTGDRTGASRK-ADVLFKDRHWESIKRINCRGRFVPDTEVVQHQL----------AQQEVEGMAALSYEEYLRRLT-QAVDTEVNTQLGEFTLRR 306
            A+ V+E ++RV+T  G      ++  +     R W S+ R  C GRFVPDTEV +  L          A   +    A SY E+LRR+T + V TE+N QLGEFTL++
Sbjct: 1352 ANLVMETIIRVMTFKGSLLEMEKQMVEANLSLRSWSSLTRTGCYGRFVPDTEVSELALNSAAPLVAEPASDPLRAPFAESYVEWLRRITTKEVVTEINVQLGEFTLKK 1459          
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Match: A0A7S1XZY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZY9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.010e-9
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    7 NPLLADKVLEGVVRVITLTGDRTGASRKA----DVLFKDRHWESIKRINCRGRFVPDTEV 174
            NP  +D+ LE VVR++T TG+R G++        V F  RHW +++R  C GRF+PDTEV
Sbjct:  104 NPETSDEALEAVVRIVTFTGNRNGSTTSDPANHSVRFSARHWVTMQRQGCFGRFIPDTEV 163          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9577.17595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI2.180e-5594.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7Z7_9STRA1.000e-2053.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UG66_9STRA2.540e-2049.02Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TMJ4_9STRA1.750e-1746.23EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A2R5FYY4_9STRA1.280e-1242.59Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7S2PE02_9STRA3.700e-1141.75Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A0L0DVD2_THETB1.370e-1038.83Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S3JZH5_9STRA4.760e-1035.82Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A0L0D658_THETB2.260e-938.89Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S1XZY9_9STRA6.010e-946.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9577contigS-dermatodea_contig9577:4599..5883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue4.9e-48
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size313
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9577.17595.1prot_S-dermatodea_contig9577.17595.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9577 4599..5883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925417.6523666-CDS-S-dermatodea_contig9577:4598..46401622925417.6523666-CDS-S-dermatodea_contig9577:4598..4640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9577 4599..4640 -
1694079919.9243565-CDS-S-dermatodea_contig9577:4598..46401694079919.9243565-CDS-S-dermatodea_contig9577:4598..4640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9577 4599..4640 -
1622925417.66479-CDS-S-dermatodea_contig9577:5126..52441622925417.66479-CDS-S-dermatodea_contig9577:5126..5244Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9577 5127..5244 -
1694079919.9397433-CDS-S-dermatodea_contig9577:5126..52441694079919.9397433-CDS-S-dermatodea_contig9577:5126..5244Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9577 5127..5244 -
1622925417.6790223-CDS-S-dermatodea_contig9577:5731..58831622925417.6790223-CDS-S-dermatodea_contig9577:5731..5883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9577 5732..5883 -
1694079919.955098-CDS-S-dermatodea_contig9577:5731..58831694079919.955098-CDS-S-dermatodea_contig9577:5731..5883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9577 5732..5883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9577.17595.1

>prot_S-dermatodea_contig9577.17595.1 ID=prot_S-dermatodea_contig9577.17595.1|Name=mRNA_S-dermatodea_contig9577.17595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
EANPLLADKVLEGVVRVITLTGDRTGASRKADVLFKDRHWESIKRINCRG
RFVPDTEVVQHQLAQQEVEGMAALSYEEYLRRLTQAVDTEVNTQLGEFTL
RRHT
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mRNA from alignment at S-dermatodea_contig9577:4599..5883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9577.17595.1 ID=mRNA_S-dermatodea_contig9577.17595.1|Name=mRNA_S-dermatodea_contig9577.17595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1285bp|location=Sequence derived from alignment at S-dermatodea_contig9577:4599..5883- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGCCAACCCCCTCCTGGCCGATAAGGTATTGGAGGGTGTGGTGAGGGT GATCACGCTCACGGGCGACAGGACAGGCGCTTCTCGCAAGGCCGACGTGC TCTTCAAGGACCGCCACTGGGAGAGCATCAAGCGGATCAACTGCCGCGGA AGGCGAGGGCGCCCTTGTTGTTGCACTTCCACGATATGTCTCTGGTATTG CCTTTTGTTTTGGTCAATGGTGCGTGTTGACCCTGCTATTTCGTCGCAGC GGTGCTGCAAAAGTTGCGGAGGGGGAAGCAGACCGGACGGGTTTGTTGTA GAACCGGCGTAATTTTGTCGTAGAGGTACACGGGCGTATTTTACAGAAAT TCGGTTACACGGCCGGGGGCGTAGCGCTTGATTTCCTGTCGACATCCCCA CAGGCGCCGTAACTGTTATCAACAATCCCCTGTTGTTGCTCGGATAGTTC CCTGCCGGGGCTTTGGTGCCCGAAACGTCTGTACCCAGCGGCGTCGTGCG CCCCGTGCCTGGCAGGCGTTCTTGGCTTTCGGCGGAAACCAGCAACGTGG TGCCATGAGCCTCAAACTTCGGCATAGCGTGCTTTTTCAGAGCTTGTCGT TGCTTTTAAGATACTTCCTCTCATCGCGATTTGGAACAGGTTTGTGCCAG ACACGGAAGTGGTACAGCACCAGCTGGCACAGCAAGAGGTGGAGGGGATG GCAGCGCTGTCGTACGAGGAGTACCTGCGAAGGCTCACGCAGGCGGTGGA CACGGAGGTGCGTTGCTGGAGGCGCATTGTCCAGCTGGCGTACCTCGTTC GTCTCCTCCCGTGTAGTTTTGCTAAATTCAAAAGGCGGCTCTTTTTGAAG TGCTCCTTCCGCGTGGTTTGCGAAGCCCAAACGCTGGCTTGTTTCAAAGC GCTGTATTTATGCTGGGGGGTTCCTGGTATCGTGTGTTGTACTGTCTCGT GATCGGGTCAGAACGGTAAGTTTACACTTGTGTAGCTGAGCTGGCTCGTC TGCCTCTCTCGCAAAACCGCGCGATAGCATGCGCTGCATGTCACGAGTCG CGAATCAACGCCACCTGCGTTGCTACCGATTTTCGGTACAGTATTCGGTG TACCTCCACAGCAGCAGCTGACCTGTGCCTCGCATGTGGTGGGACCCAGG GCTGTCCAAATCTGGCGTAGCATCCAGCTTTTGAACGTGATTGTCACTAA CGTGTTCTACTTGTAACCCCCTCCACATACACGCCTTCTTTAGGTGAACA CCCAGCTCGGGGAGTTTACTCTACGTCGACACACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9577:4599..5883-

>mRNA_S-dermatodea_contig9577.17595.1 ID=mRNA_S-dermatodea_contig9577.17595.1|Name=mRNA_S-dermatodea_contig9577.17595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig9577:4599..5883- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGCCAACCCCCTCCTGGCCGATAAGGTATTGGAGGGTGTGGTGAGGGT
GATCACGCTCACGGGCGACAGGACAGGCGCTTCTCGCAAGGCCGACGTGC
TCTTCAAGGACCGCCACTGGGAGAGCATCAAGCGGATCAACTGCCGCGGA
AGGAAGCCAACCCCCTCCTGGCCGATAAGGTATTGGAGGGTGTGGTGAGG
GTGATCACGCTCACGGGCGACAGGACAGGCGCTTCTCGCAAGGCCGACGT
GCTCTTCAAGGACCGCCACTGGGAGAGCATCAAGCGGATCAACTGCCGCG
GAAGGTTTGTGCCAGACACGGAAGTGGTACAGCACCAGCTGGCACAGCAA
GAGGTGGAGGGGATGGCAGCGCTGTCGTACGAGGAGTACCTGCGAAGGCT
CACGCAGGCGGTGGACACGGAGGTTTGTGCCAGACACGGAAGTGGTACAG
CACCAGCTGGCACAGCAAGAGGTGGAGGGGATGGCAGCGCTGTCGTACGA
GGAGTACCTGCGAAGGCTCACGCAGGCGGTGGACACGGAGGTGAACACCC
AGCTCGGGGAGTTTACTCTACGTCGACACACGGTGAACACCCAGCTCGGG
GAGTTTACTCTACGTCGACACACG
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