mRNA_S-dermatodea_contig954.17562.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig954.17562.1
Unique NamemRNA_S-dermatodea_contig954.17562.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig954.17562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig954contigS-dermatodea_contig954:2885..10534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size566
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig954.17562.1prot_S-dermatodea_contig954.17562.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig954 2885..10532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925415.2690086-CDS-S-dermatodea_contig954:2884..30601622925415.2690086-CDS-S-dermatodea_contig954:2884..3060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig954 2885..3060 +
1694079918.2807508-CDS-S-dermatodea_contig954:2884..30601694079918.2807508-CDS-S-dermatodea_contig954:2884..3060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig954 2885..3060 +
1622925415.2826686-CDS-S-dermatodea_contig954:9762..99841622925415.2826686-CDS-S-dermatodea_contig954:9762..9984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig954 9763..9984 +
1694079918.2897506-CDS-S-dermatodea_contig954:9762..99841694079918.2897506-CDS-S-dermatodea_contig954:9762..9984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig954 9763..9984 +
1622925415.2921667-CDS-S-dermatodea_contig954:10366..105321622925415.2921667-CDS-S-dermatodea_contig954:10366..10532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig954 10367..10532 +
1694079918.3008482-CDS-S-dermatodea_contig954:10366..105321694079918.3008482-CDS-S-dermatodea_contig954:10366..10532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig954 10367..10532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig954.17562.1

>prot_S-dermatodea_contig954.17562.1 ID=prot_S-dermatodea_contig954.17562.1|Name=mRNA_S-dermatodea_contig954.17562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=188bp
NCKGAAWHRRSVYHRGPEEDLAGAAEQSRSPVGGRRRPSSAYLGRAARTA
NGHTLHFGRNTQTWPSRQKGAELSAHWWSAPPCIPTTSPTPSGGKGRAST
SIASPVLPVIRGRMRSGRGDQSPTGPRRTPRSSRTVCSPTVALPTAAALL
TRPPLLPAPQRDQASQALGPSLGRRGRPPLIPALPVVH
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mRNA from alignment at S-dermatodea_contig954:2885..10534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig954.17562.1 ID=mRNA_S-dermatodea_contig954.17562.1|Name=mRNA_S-dermatodea_contig954.17562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7650bp|location=Sequence derived from alignment at S-dermatodea_contig954:2885..10534+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATTGCAAAGGCGCTGCGTGGCACAGGAGATCTGTCTATCATAGAGGTCC
AGAGGAAGATCTAGCCGGGGCAGCGGAGCAATCGCGCAGCCCTGTCGGCG
GTCGGCGCCGACCTTCCTCTGCTTACCTAGGGAGAGCGGCAAGAACTGCG
AACGGACACACATTGCACTTCGGAAGGTGAGTGCATCTTGGGTGTCGGGC
GTACATCGTACATACAATCGTTTGCGCAAGCGCACGCGCCCCTGGTATTT
TGCTTGCTTTGCGGGACAACGCGGCAGGCAGTGCCTTGCATCAGGAGCTA
GCTGTTTGGACGTTGATCGGCCGCAACCTGCAGGGTGGCCGCCTAGCCTA
AGGTGCCCTGAAGCAACCCATTTGTAAAATATGAGCGTCGACAATTCATG
CACGCGCAAACTACTGCTGTACTATCATACTATAAATACTACCATACTCT
GTAAGTACCATATCATATACCACATACATGGTATATGGTCCTCGTGTGCG
CGCTTCGAAAAGCAGAGCATATGATACTCGCCCTCAGGTTGAACTCGCGC
ATACATACACAGTAGACAGAGCAGTGAGCTCGGTGGAATGTCTGACCCGC
CGTGCTGCTCTTGATGCGTTGCTGTGCACAAATGGGTACTCTTTGTCGAA
GCCATGTGCTCTCCTTCGCGTACAAATACTCGTACATCCCACGAGCCGCG
GGTTCGTGTTTTGTTCAGCACAATGACAGGACTTGGACAGCATGTGAACG
GTTATGTACCAATAATAGCGTCCCCTCGATTTCGTTCTCGAATTCAAATG
TCGGGAGGCCTAAGAGACAGCAGGGGGTTTGGTGAATCACCTGTACTTGT
AGTAGGTGGAAGGTGGCGATACCGTTGTTATACTACTGCTGTTGTATCTA
TGTCATATATCCCACACATGGGGGTAGGTCGAGGGTGCATTGGATGCTAT
GATAGCCCAAAAGAGGAATGTTTTCTTTGGAACCAGAGTACCAAGAACTT
GCCCAGGTACTCTAATGCTTTATGATACCACACCTTTGAATGAATACAAT
ATACATGTGCTGCTGTATACAGAGTATAGCTCTAAAACATCATATGCAGG
CTCACTTTCAGCTGAACAACACACGTAGCGGCCACAGCAGCACAAGTACA
CACTTGTACTGTACCAAACTCAAAAATTCACTCGTGACACACCAAATCAG
TGCGCAAGGAAGCACAGCCCCAACCCGTGTGGGTAGCTTCTCTCTTTCTG
CATCTGCCCTCATTCTATGACAGCCTGGCAGTGAGGAAACAACAAGAATC
GATACATACCAGTAGGTAGCCACGGCAACGCCCGTGAGGTGTGTGCGTTG
GCAGAACGATATGGCGGCGGCGGTAATAATCGAGCGAAGCGGTCGACCGC
GGCGGCCGACCGCGCTATTAATCTCTATGAATAGCGGGGGCCAAAACTTG
AAAATAAGAGACTCTGAAATCGCTATGAGTATCGGGGGCCAAACTACTTG
AAAAATGAAAGACTCTAAACTCGCTATGAATGTCGGGGCCCAAACCACTT
GATAATAAAATACTCTAAATCGCTATGAATAAGAGGGTTCACTCTTGTAT
TAATTAATAAGGATAAGCTTGACAGAGAACAAAAACAACTATTTATTGTC
AGTTGTACAAAGTACAAGCTGGGCCGGCTACAGAGCCAATATAGTTTCAG
ACTACGATAGCTTTCGAACGAGACCGAATCAGCGCAATCTGCGGCAGATC
GTCGTGATCGGCAGACTAAGGCGGTGGCGCGGAGCCTTTCAACCTTGTAT
TCCGCTTCGTTGGTGTCGGGAAAAGCGCATCTCGGCGGTGGCAGCTCTTT
CAACATTTTGCTACAATAGACTGTCGTGCAAGTAGGTACCATATGCTACA
AGTTTGTCTTCCAGCTGCAGCGAGTCCTGCGGTCTCCGCGCGGGCGACCG
ATGGCCAAGGTTTCCGATCGGCGAAGGAGCAGCTGGCTGTCGCCCCCTCC
CACGTACCACAGGCGATGACGCCGCGTGCTCTTAAAGGCAATACTTGGAG
CTAGTGAGCAGAGGGGAAACACGTGTCGCTCGTGTGGCGGTGGCCGCTTT
CGTGTACTGTATGATCGGGGCGATCTTCAAAAGCCTCACTCCCCGGAAGT
ACATTGGTTCGGTCGTGTTTGAACAGCCCGGCAACCGCTGGCTTAAGATG
TTGGAGACCATCCATCCCTCTTTGGGGTCAGAATGTAAGAGCTTTCGAGC
TGGTCTGAATTGCATTAAAGTTGAGTTTAGACTAAAAAAACATACTGTAT
ACTTGTAGGGTGTTTGCGACGGGCGGCTGAACAAACGGGCTCTAACCGGG
GAAAGTTATCGTGTGAAGATACGATACACATTCGATATTTTGCGACGGTA
AACCAGGCACACCCTAAAAAACGAACGAAAATCGACTGGTGGCATGGCGG
AAGATCCAGGTTTTTGACGGTTGACTAATTTACGTATTTAAAAATACAGG
ACTTTTTTTTGCAAGCGTGTGTGTCCACCCTAGCACGCTCGGGGATACGA
TTCCTTGGGTATGTTGTAGGCGTGCGCTCGAGCTGGACATGCGCCGAACC
GTCGTTGGAACTCAACGCTAGCGGCGTCGCGGCGAGGGCTCCTCCCCTTC
GAGGGGCAGCGGCGTTCGCGGGACGGGCGAGGGCGTCAGGATCTGTGCCC
CCCTCTACCAGGGTCGCACCGGCCAGGTCCTCGAAAGTTGCTCGCCACCA
TGCTTCCTTTTTTTTCTTCTTTCCAAGCCCAGCACTCTGATGTAGCACCA
ACCGCAAAGCGTCGCAAACTAGCTAAGCTTCGCCAGTTCAGCCATTTCGG
CGGCGCAGCGTCCATCCCCGCGCTGTGGGTGCGCGATCTCGCGGATCGGC
TTGCTTGCGATGAACTTGCCTCATACTTTATTCGCGCAACACGTTACCGA
GCACAGCAGGCACGCTGCTTGTAGCAGTTTGGGCGGTGTGGTGCCCACGC
AGCTGGCAGCTGGCAGCAGGCACTTGGTTGCCCCGCTTGCGACATCTCTG
CCTGACTCTTTAGCCGATTCCTGCGTTTTTTACCCGTCCACGGCTCTTCC
CACCAACGTAGATCATCCGTTCCCCCATCGAAAATCGCGATGTTTTTTTT
TTTTTAAGTCCATGAAAATCCCGTTCTTTTGCTCCCGGGGGGCCATCGCA
AACACCCCATTACTGTGTGTATCATGGGAAGTTAAAAGGTTTTCACCAGG
GGCCGAAGTATGGTAGTAGTAAAAAAAAATGCTTTGTGGTCAGAATTTTT
CAGTTTGCATTAAATTTGCATGCAGTGTAAAATGTGTACTATTTATACAT
AGCTGTCCAGCCCCGTCGGCGCTCACAGCAGCAGCAGGCGCGTGCGCCAA
ATGGCCCACTCTGGTTGTGCCGGCTGTTTCCTTGCCATGGCGGGCGTCGA
CACAGAAAAGCGCATCGAAGAGCCGGGCGATTAAAAGGTCCCAAGTCTTC
TTGACACACGGAATGGTGGTTCGAGAGGCAATTGGGTTTCTCAGCCGCTC
GCCTTTCTTCCTCAGCACCACGGCCCACGGGCTGGCGCGGCGTAGTAGCC
GCGGGGCAACGTGCCGCCGTCGCTCGGTTGTGTGGCGATCAGAGCAATAA
CAGCCCTCCCGGCCGCCCACATATACTGTATCATCGGCAGGCCTTGCGTT
CATCATACTGCTGTCAATTGTTTTATACTATACATCATGATAGGTCTGCT
GGTGTTGGGGTGGGTGATGTATGTACATACGGTGTAAAACGCGGAGCAAC
CTCGTCGTTCATGTTCTGATCGGCGGCCGAGCCGGTTGGTCAGAATTGAA
GCCGAAATTCTGACGAACTACGGAGGGGGTTTGGCCGGCCAGAAAGAGTT
GCTTGGGCCAAACTCTGGTAAAAACTATAAAAGGCCGGTAACTTTTGTCG
ATCAGTTTTCAGTCAGAACTTCGACTGAATTGCAACTCTGACCCAAAGTT
CTGACCCCACAAGGGATGGTTTGAGTCAGCAGCAGTCAGCTGGTGTTCAT
AGAAACGTCTTTAATCCAGAGGCGTTTCTACAGGGTAGGTGCGGAGGGAG
CACCAAGCGTGCAGAAGGTATCTATGGTTTCAAAAGCACGATTGTCTTGT
CACGCGACATTCCTGCGATGTTATTCTCTCTGACGGGGCTAGACTGCGGT
GTGCTGGCCCCAGCTCCGGCAGGATCGCCCAATGACGCGCGCACGACTTG
TGGCACTGGGCAAATAGTAATCTTAGGGTGTGGTAAGGGAGAGCAATCTT
GACCAAAACGGGTGGAGCTTGGGAGAATGGCGACAGGCGTTTTTTTAGAC
CGTTTACGGTGCAGTCGGGAGGGATACCTCATTGCCTAGTCCACGCCTGG
TGTACGATTCGCTGCAGTTCGCGAGAGAGTCGATTCGGCAGCACGTGGCA
TGACGAGTGGCTGACGCTGGGGTTGGGTGTCCGACCCAGTATCAAGGAGA
CAGACAAAAAATACGCTCGAGACGATTTCCCCTTCCAAGTCATTATATCT
GCCGTAGTTGCTACTCTTGTGAGCAACTGGTAGCTGGTGTTTGGTGAGTT
TTCTGAAAATGCCTTCGCTCATCTTCCCCCTCCGTCCTCTCGAGGACGCG
TGGTCAATGGTCTAACAGCTAAGGCATGCAAAACATGAGTACGCCCCCCC
CGACCATATACTTGTACTTCGTAAGTGATCGTAGGTTTGCGGGGTGGAGG
CTTGTTCCAAGAAGCTAAGAACCAGGAATCTGATTGGCCGAGGAGACCCT
CACACGCCGAAACAAAGCCCAGTTTTTTTGTTTTAGAAAGAAGCAGAACA
GAGAAATTGTACAATTTATAACCCATCGGGACCGGGCCCGGGTGGACTTT
GTTTACACAAAACTGAGATACCGTATATCATTGGCCGCCCGAAAGAAAAA
ATCCTGGCTTAGAACATGGTATATTAATAGGCGACTCCCCAAGTATAATA
CTTGGCTCAGCAGATAACGTACCCCGGCGAACCATCAGTCAGTCTTAATA
TTCTGCGTGCGTGCTACCGCATTTACTCCAAGGGAACGCGTATTTAATGT
ATTGCAGCTTTTAAGTCCTGCGTTGTTAGTATGCAGACGAGCAGACAGTT
GCGCCGAAAACACATTCAGCATTTTTCTCTGTAAGAGACAGCACGCCGCG
ACTTTCCCTCCGGCTGTTGAACCCGCGTTTGTGGAGGCGTGTGACCGATC
GTGTGTATGAGCCAGCCGAACCTCGTACGGCGGAACTAGTACTGTATGTA
GAACGGCTACGCCCGTGAGGTGTGCGTGGTCGCTCAACTCCAAAATCAAG
TGTTTTGTCGCTCAACACAAACATGAAGTTGTTTGGCATCGAAATCGCAT
AGGAGTTTAATGCACAAAGTCGGCCTCAAAATTGTATAGGACTTTAGTGG
ACAAAATCGCCCTCACAATCGTATAGGGAATACTGTAGTGTGCAAAAAAA
ATTAATACGGTAGTAATTCATATAGACCATCTGCTCGTGTACTTAAGACC
CCCACTATTTTGTTTTGTTGGTTCGAGCGTTGCTCTGATACATACTCTCC
GGACGTACTATCGAGTAAGGCTGAAGGATGTACACCAAATCATCCTCAGC
AAGTCCGTCACCATCTGCTACGCCGGACTTTCCTGAAAGGAGCAGCAAAT
GTGACACGAGATACCTCGAGTTGGCAGTGTGTGTGAGCTTGGACGTTCGT
AACATTTGTCTCGATCGGCGTTAAGGAAACTAGCGTGGCCGGTAGCACAA
GCTAGCGAGCACTTGGCCCGATCTTCAGCCCACGTAGGCATCTACCACTT
GTTTATGAAAAGACCTCTGGTGGCAGAACGGGCCTGCTTAATCTCCCGCA
GCTCAGTGCTTTGCTGTAGGCATGTGCGACAAACCGAAGAAGTGCTTCGC
ATCATGGTCTACGTGGAGGGTGCTGGACTAGAAGTCTCTCCGTCGAAATT
TGCCTGGTCGAGTCTTCCGGTGCCCTGTCGACATCTAATCGAAATGCGAA
TGCACATAACTTGGGTTGTGGACGGAAGGGGGAATCGACCCGGTGCTGAT
ATGCATACTTGTACATATGTTTATGTCTTGTTTCATTCGCTAGCTGGCGT
GTTGAGGAGGATCGCAGTGTTTCACACCGGATGGCTTCTTTATCTTCACG
TATCTTGCAGAGGATCGTATACGCAAGTCGGTGCACAGCAGCGCCTGTTG
CGTGTCGGCACCTTTGCAGTGCATGGCGGCCTTCATTTCCAGATTGAAAA
TGCACAAGTTCTGGTATTATGTTTGTAATCCGAATAGCCGTTTCCGGCTC
AAAGCCCATGGGGAGAGATTGGCGACCATTTACTTGACTGTTGTGTGTCT
ATCGGACCGGAGAATCCTGCAACCCACAAGATGTATGTACATAGGGGAGT
GCTGGCAACCTGGTCGTGGAACGTCTGGCAAGCACCGCACGCCGATAGAT
GCGAGCTGTCCGGAAGTATCTGAAGAGGTGCATCGCGTCGGTTCACCCTC
CAGCATACCCTGTCTTGGGCGGCATAGGGGTTACTTCTCACCCGTGTGTA
TTCTCTCCAGTCAAATGAGCTCCATAGCCACTGCTTGTACGACCCCTGTG
CGTCTCCACGATATGTAATATACCACAAGATTCGCTGCCTACTATTAATA
ACATGTTTCGATACTCGCTCCCACATCCAAGGGGATTCGGTCTACAGCAG
TTTAGTGGTATACATACACGACGCGGCGCGGATCACACACTCTCATCTGC
GCAATTTTCGTGTACCTGTATTTTGCGCGCTGGCATTTCTGCGTTACCCC
CCTCCCCTCCCCTGGCTGCGAAATCAAGGAACACACAAACATGGCCCAGC
AGGCAGAAAGGGGCAGAGCTCAGCGCCCACTGGTGGAGTGCTCCCCCCTG
CATTCCAACTACTTCGCCTACACCTTCGGGGGGAAAGGGTCGGGCATCGA
CCTCTATCGCATCTCCCGTCCTTCCAGTGATACGGGGGCGGATGCGGTCG
GGACGAGGGGATCAATCACCGACCGGCCCGAGACGCACTCCACGCAGCAG
GTGACCCGAGAAGGTTGGAAAAAAACGAACCATGCGCACGCACTTGGCTG
CCAATTTTGGATTTGTTTGTCGACTCTAACGATATGACATTGTTTCGCGG
GGTCTTCGCCACCGGGGCTGCCGAGTTAAGCATTGAACAGGCGCTCCCGT
GCATGTGATGCCCTGCAGGCTGGGTGGCGCACGCTTTTCCTACGTGGTCG
CCGTCACACTTTTTTCCCGTGCTGCGCCAAGAGTCGGATTTTGATTTACG
TGATGCCCGCGTGCCGTGAGAGGTAGATCCCATGAGCTCAACGAACGCGT
CCCCCCCCCTCACGCCGCCCTCCACATCTGCCGCCGTTCCCACGCGTACC
CGTCTTCCACTCGATCTATACGCCCGCCATAGCCGTACCGTGTGTTCGCC
GACAGTAGCCCTACCGACAGCGGCGGCGTTGCTTACGCGACCACCGCTAT
TGCCGGCCCCACAGCGGGACCAGGCTTCTCAAGCCCTTGGCCCCTCGTTG
GGGAGAAGGGGACGGCCGCCTCTGATCCCCGCGTTGCCGGTGGTGCATCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig954:2885..10534+

>mRNA_S-dermatodea_contig954.17562.1 ID=mRNA_S-dermatodea_contig954.17562.1|Name=mRNA_S-dermatodea_contig954.17562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at S-dermatodea_contig954:2885..10534+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATTGCAAAGGCGCTGCGTGGCACAGGAGATCTGTCTATCATAGAGGTCC
AGAGGAAGATCTAGCCGGGGCAGCGGAGCAATCGCGCAGCCCTGTCGGCG
GTCGGCGCCGACCTTCCTCTGCTTACCTAGGGAGAGCGGCAAGAACTGCG
AACGGACACACATTGCACTTCGGAAGAATTGCAAAGGCGCTGCGTGGCAC
AGGAGATCTGTCTATCATAGAGGTCCAGAGGAAGATCTAGCCGGGGCAGC
GGAGCAATCGCGCAGCCCTGTCGGCGGTCGGCGCCGACCTTCCTCTGCTT
ACCTAGGGAGAGCGGCAAGAACTGCGAACGGACACACATTGCACTTCGGA
AGGAACACACAAACATGGCCCAGCAGGCAGAAAGGGGCAGAGCTCAGCGC
CCACTGGTGGAGTGCTCCCCCCTGCATTCCAACTACTTCGCCTACACCTT
CGGGGGGAAAGGGTCGGGCATCGACCTCTATCGCATCTCCCGTCCTTCCA
GTGATACGGGGGCGGATGCGGTCGGGACGAGGGGATCAATCACCGACCGG
CCCGAGACGCACTCCACGCAGCAGGAACACACAAACATGGCCCAGCAGGC
AGAAAGGGGCAGAGCTCAGCGCCCACTGGTGGAGTGCTCCCCCCTGCATT
CCAACTACTTCGCCTACACCTTCGGGGGGAAAGGGTCGGGCATCGACCTC
TATCGCATCTCCCGTCCTTCCAGTGATACGGGGGCGGATGCGGTCGGGAC
GAGGGGATCAATCACCGACCGGCCCGAGACGCACTCCACGCAGCAGCCGT
ACCGTGTGTTCGCCGACAGTAGCCCTACCGACAGCGGCGGCGTTGCTTAC
GCGACCACCGCTATTGCCGGCCCCACAGCGGGACCAGGCTTCTCAAGCCC
TTGGCCCCTCGTTGGGGAGAAGGGGACGGCCGCCTCTGATCCCCGCGTTG
CCGGTGGTGCATCCGTACCGTGTGTTCGCCGACAGTAGCCCTACCGACAG
CGGCGGCGTTGCTTACGCGACCACCGCTATTGCCGGCCCCACAGCGGGAC
CAGGCTTCTCAAGCCCTTGGCCCCTCGTTGGGGAGAAGGGGACGGCCGCC
TCTGATCCCCGCGTTGCCGGTGGTGCAT
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