mRNA_S-dermatodea_contig9505.17536.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9505.17536.1
Unique NamemRNA_S-dermatodea_contig9505.17536.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: D8LKY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY0_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 8.650e-77
Identity = 138/165 (83.64%), Postives = 140/165 (84.85%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            PKN CVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQS ASR+LIQKV                     TNVVTNP NDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIE +KEARSLNMIVTELYLD
Sbjct:  173 PKNVCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSAASRELIQKV---------------------TNVVTNPVNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIETTKEARSLNMIVTELYLD 316          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A835ZAP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP1_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.410e-67
Identity = 120/170 (70.59%), Postives = 135/170 (79.41%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD*SPPV 510
            PKNYC+LGTRHCSFLHQQIIELLAYALVLSGNHVFTSGA GTNAATIRGALRAER +LLTVVLPQSL KQS+ S++L+ +V+                     NV+  PQNDHLPLD ASRLCNSDLLSR +QLICFAFHDS TIIE ++EAR+L+MIVTEL+LD   PV
Sbjct:   53 PKNYCILGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAGGTNAATIRGALRAERPDLLTVVLPQSLAKQSDESQELLTQVQ---------------------NVIDAPQNDHLPLDVASRLCNSDLLSRADQLICFAFHDSHTIIETAREARALDMIVTELFLDRGGPV 201          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A6V2EYW5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EYW5_9STRA)

HSP 1 Score: 207 bits (527), Expect = 6.530e-58
Identity = 107/165 (64.85%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            P+ YCVLGTRHCSFLHQQIIELLAYALVLSGNHV+TSGA GTNAA IRGA+RAER +LLTVVLPQSL KQ++ S++L+                     K+VT++VT PQND + LD ASR+CNS LLS+T+QLI FAFH+S+T+IE SKEA+ L+M+VT LYLD
Sbjct:  133 PQKYCVLGTRHCSFLHQQIIELLAYALVLSGNHVYTSGASGTNAAAIRGAIRAERPDLLTVVLPQSLNKQTKESQELL---------------------KDVTDLVTMPQNDDMSLDVASRICNSYLLSQTDQLISFAFHESQTVIEASKEAQKLDMLVTTLYLD 276          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A7S2I159_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I159_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.330e-57
Identity = 107/165 (64.85%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            P+ YCVLGTRHCSFLHQQIIELLAYALVLSGNHV+TSGA GTNAA IRGA+RAER +LLTVVLPQSL KQ++ S++L+                     K+VT++VT PQND + LD ASR+CNS LLS+T+QLI FAFH+S+T+IE SKEA+ L+M+VT LYLD
Sbjct:  176 PQKYCVLGTRHCSFLHQQIIELLAYALVLSGNHVYTSGASGTNAAAIRGAIRAERPDLLTVVLPQSLHKQTKESQELL---------------------KDVTDLVTMPQNDDMSLDVASRICNSYLLSQTDQLISFAFHESQTVIEASKEAQKLDMLVTTLYLD 319          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: B8C532_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C532_THAPS)

HSP 1 Score: 198 bits (503), Expect = 4.750e-56
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            PK YC+LGTRHCSFLHQQI+E+LAYALVLSGNH++TSGA GTNAA IRGALRA +  LLTVVLPQS+ KQ+  S++L++                     +VTNV+T PQND +PLD ASR+CNS LLS+T+ LI FAFH+S T++E ++EA+ L M+VT LYLD
Sbjct:   18 PKKYCILGTRHCSFLHQQIVEMLAYALVLSGNHLYTSGAAGTNAAAIRGALRAFQPHLLTVVLPQSMAKQTPESQELLE---------------------DVTNVITMPQNDQMPLDVASRICNSHLLSQTDHLISFAFHESTTVLEAAEEAQKLEMLVTLLYLD 161          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A448ZCS9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCS9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 4.960e-56
Identity = 104/165 (63.03%), Postives = 127/165 (76.97%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            P+ YC+LGTRHCS+LHQQIIELLAYALVLSGNHV+TSGA GTNAAT+RGALRAER++LLTVVLPQSL KQ+  S++L++KV                      +++T PQND L LD ASR+CNS LLS T+QL+ FAFH+S T+IE SKEA+ L+M+VT LYLD
Sbjct:  203 PQKYCILGTRHCSYLHQQIIELLAYALVLSGNHVYTSGAPGTNAATVRGALRAEREDLLTVVLPQSLSKQTSESQELLKKV---------------------DDLITMPQNDELSLDVASRICNSYLLSLTDQLVSFAFHESTTVIEASKEAKKLDMLVTTLYLD 346          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A1E7FA35_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FA35_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.410e-55
Identity = 100/165 (60.61%), Postives = 126/165 (76.36%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            P+ Y +LGTRHCS+LHQQIIELLAYALVLSGNHVFTSGA GT+AA +RGALRAER++LLTVVLPQS+ KQ++ S++L+ KV                      +V+T PQND + LD ASR+CNS +LS T+QLI FAFH+S T++E SKEA++L+M+VT LYLD
Sbjct:   21 PQKYSILGTRHCSYLHQQIIELLAYALVLSGNHVFTSGAGGTHAAAVRGALRAEREDLLTVVLPQSMSKQTKESQELLDKV---------------------DDVITMPQNDDMSLDVASRICNSYILSLTDQLISFAFHESNTVVEASKEAKALDMLVTTLYLD 164          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A7S2XNC9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNC9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.500e-55
Identity = 104/165 (63.03%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            P+ YCVLGTRHCSFLHQQIIELLAYALVLSGNHV+TSGA GT+AATIRGALRAER +LLTVV+PQSL KQ++ S++L+                     K+VT+++T PQND + LD ASR+CNS LLS+++QLI FAFH+S T+IE +KEA+ L+M+VT LYLD
Sbjct:  161 PQKYCVLGTRHCSFLHQQIIELLAYALVLSGNHVYTSGAGGTHAATIRGALRAERPDLLTVVVPQSLGKQAKESQELL---------------------KDVTDLITMPQNDDMSLDVASRICNSYLLSQSDQLISFAFHESTTVIEATKEAKELDMLVTTLYLD 304          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A7R9YDI6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDI6_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.260e-55
Identity = 107/165 (64.85%), Postives = 122/165 (73.94%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            PK+YC+LGTRHCSFLHQQIIELLAYALVLSGNHV+TSGA GTNAA IRGALRA   +LLTVVLPQS+ KQ   S+ L+ KV+                     NVV   QND L LD ASRLCNSDLLSR EQLI FAFH+S+T+IE +KEA+S +M+VT LYLD
Sbjct:   98 PKSYCILGTRHCSFLHQQIIELLAYALVLSGNHVYTSGAGGTNAAAIRGALRAGAPDLLTVVLPQSISKQPAESQKLLAKVK---------------------NVVEMSQNDGLGLDMASRLCNSDLLSRAEQLIAFAFHNSRTVIEATKEAQSRDMVVTVLYLD 241          
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Match: A0A7R9WLF4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WLF4_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.330e-54
Identity = 102/165 (61.82%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 PKNYCVLGTRHCSFLHQQIIELLAYALVLSGNHVFTSGAMGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRVLLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAFHDSKTIIECSKEARSLNMIVTELYLD 495
            P+ YC+LGTRHCS+LHQQIIELLAYALVLSGNHV+TSGA GT+AATIRGALRAER++LLTVVLPQSLEKQ + S++L++KV                      +++  PQND + LD ASR+CNS LLS+T+QLI FAFH+S T+IE +KEA++L+M+VT L+LD
Sbjct:  180 PQKYCILGTRHCSYLHQQIIELLAYALVLSGNHVYTSGAGGTHAATIRGALRAEREDLLTVVLPQSLEKQPKESQELLEKV---------------------DDLIEMPQNDGMSLDVASRICNSYLLSQTDQLISFAFHESTTVIEATKEAKTLDMLVTTLFLD 323          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9505.17536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKY0_ECTSI8.650e-7783.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAP1_9STRA1.410e-6770.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V2EYW5_9STRA6.530e-5864.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2I159_9STRA2.330e-5764.85Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B8C532_THAPS4.750e-5660.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A448ZCS9_9STRA4.960e-5663.03Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FA35_9STRA1.410e-5560.61Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A7S2XNC9_9STRA1.500e-5563.03Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9YDI6_9STRA2.260e-5564.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9WLF4_9STRA1.330e-5461.82Hypothetical protein n=2 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9505contigS-dermatodea_contig9505:4410..7557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.6e-43
Seed eggNOG ortholog2880.D8LKY0
EggNOG OGs28KAM@1,2QSRD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size2192
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9505.17536.1prot_S-dermatodea_contig9505.17536.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9505 6104..6995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925413.2945309-UTR-S-dermatodea_contig9505:4409..61031622925413.2945309-UTR-S-dermatodea_contig9505:4409..6103Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9505 4410..6103 -
1694079916.9247656-UTR-S-dermatodea_contig9505:4409..61031694079916.9247656-UTR-S-dermatodea_contig9505:4409..6103Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9505 4410..6103 -
1622925413.3472922-UTR-S-dermatodea_contig9505:6995..70581622925413.3472922-UTR-S-dermatodea_contig9505:6995..7058Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9505 6996..7058 -
1694079916.9660804-UTR-S-dermatodea_contig9505:6995..70581694079916.9660804-UTR-S-dermatodea_contig9505:6995..7058Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9505 6996..7058 -
1622925413.3588629-UTR-S-dermatodea_contig9505:7503..75571622925413.3588629-UTR-S-dermatodea_contig9505:7503..7557Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9505 7504..7557 -
1694079916.9783242-UTR-S-dermatodea_contig9505:7503..75571694079916.9783242-UTR-S-dermatodea_contig9505:7503..7557Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9505 7504..7557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925413.309271-CDS-S-dermatodea_contig9505:6103..62981622925413.309271-CDS-S-dermatodea_contig9505:6103..6298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9505 6104..6298 -
1694079916.9387064-CDS-S-dermatodea_contig9505:6103..62981694079916.9387064-CDS-S-dermatodea_contig9505:6103..6298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9505 6104..6298 -
1622925413.3247566-CDS-S-dermatodea_contig9505:6397..65571622925413.3247566-CDS-S-dermatodea_contig9505:6397..6557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9505 6398..6557 -
1694079916.9479015-CDS-S-dermatodea_contig9505:6397..65571694079916.9479015-CDS-S-dermatodea_contig9505:6397..6557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9505 6398..6557 -
1622925413.3353236-CDS-S-dermatodea_contig9505:6969..69951622925413.3353236-CDS-S-dermatodea_contig9505:6969..6995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9505 6970..6995 -
1694079916.9565191-CDS-S-dermatodea_contig9505:6969..69951694079916.9565191-CDS-S-dermatodea_contig9505:6969..6995Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9505 6970..6995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9505.17536.1

>prot_S-dermatodea_contig9505.17536.1 ID=prot_S-dermatodea_contig9505.17536.1|Name=mRNA_S-dermatodea_contig9505.17536.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MGTNAATIRGALRAERKELLTVVLPQSLEKQSEASRDLIQKVRRLGMLRV
LLCLKQVALDKNVTNVVTNPQNDHLPLDAASRLCNSDLLSRTEQLICFAF
HDSKTIIECSKEARSLNMIVTELYLD*
back to top

mRNA from alignment at S-dermatodea_contig9505:4410..7557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9505.17536.1 ID=mRNA_S-dermatodea_contig9505.17536.1|Name=mRNA_S-dermatodea_contig9505.17536.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3148bp|location=Sequence derived from alignment at S-dermatodea_contig9505:4410..7557- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAAGAACTACTGCGTGTTGGGCACAAGGCACTGCAGCTTCTTGCACCA GCAGGTGCAGTTTTGATTTGATGCGTCCATTGGTGCCGATGTGTTCCCCG TGGAACAATCAACAGTCACCACTACAAGACGCGCTGCCTTAGCGCAACCG CTGCCACAGCTTTCCTCGAAGCATGTGGTTTCTGATTTCTCAAAACGCTG GCTGGCGTAAGGAGCTCTGCTCGCATTTGCAACGTTTTGATACGCACTTG TTCGACAACCCCGGCTTCGGCTGGCGATTACCGTAGGCGAAGATAATCCA ATATTGTGGTTATGAGACGGTGGCAGTCTCTCCCGCGATTTCGCTCAGGC CTTGTGTCGTGGGGTATCATTTCCATTTTGTATGTGTTTCGCGTTATGTG TGCGTTTGGCCGAAAACGTCACGTGTGTAGGTGTCGGCATGACTCACAAG GCGTCCCCCGCTTTGTTTTGTCCCATCGTGTTCGCGTGTCTGTTGCCAGA TAATCGAGCTGCTGGCATACGCGCTGGTGCTGAGCGGCAACCACGTGTTC ACCTCGGGAGCAATGGGGACTAACGCGGCCACGATACGGTGCGTCCCGTC GGGAAACACAATGATGTATGCATACAAAATCGGTCGGCGTTGCCAGCACC GCAATATTGGAGATCGTGGCATCTGTCGCAGGCGTTGCTCGGTCTGGTTG GCGGGCATTCTTTGCTCTCCTGCGGGCGCTTCGTTTGACCAATCGTGTCG CCTTGGGTTGAATTTTTAAGCTAGCTTCTTGGAAATTTCGTTCCAGACTG AAGGAAGGTCCCCCAGCGTCCAACCGTAGAGTCTGTACCTGCGTGTCTGC TCTTACAGTACACGTCGCATGCCACGCTGCGTACTATCCGTGGTGAATGC TTCAACTGGCTACGGGTGTCGCCAGGCCGAGGTTTTCTAGCTTAATTCTT GAGGCTAAACGAGCCCCCCTCCCGCCGCTTTTGGGGTGCGTCGATGGCAG GGGTGCATTGCGAGCAGAACGGAAGGAGCTGCTCACGGTGGTGCTACCAC AGAGCTTGGAGAAGCAGAGCGAGGCCTCTAGGGATTTGATTCAGAAGGTG CGTAGACTTGGAATGCTGCGTGTGCTCTTATGTTTAAAACAGGTTGCGCT GGACAAAAATGTCCTGCAGCAGAATTTGGGGCACAAGGCACTACTGCCCA CGTTTTAACCGCGTTCACCCTCCCCGCCTACTGTGTGCCATTTTTTACTC TACCACCAGGTGACCAACGTGGTGACCAACCCGCAGAACGATCACCTCCC CCTGGACGCCGCCTCTCGACTATGCAACTCCGACTTGCTTTCGCGCACGG AGCAGCTGATCTGCTTCGCCTTCCACGACTCTAAGACTATCATCGAATGT TCAAAGGAAGCCAGGTCCCTCAACATGATTGTCACAGAGCTGTATCTCGA TTGATCACCACCCGTTCAGTTCATTGTTGTTTGCAGACTTGCTTGTGCGG TTGGCTCTGTCAAGCCAACGGAGCGACGCCCTGGGGCTAAGAGCTCGCGC GTTGGGCGTAGCCTTATCGATGTAGGGGTCGTTTCGTCGAAAAGGCTGCA GGGCTCGATCGGTTTAATTTACCACGTCAGCGTGAACGATGGGGGTGTAG TCCCGTCCGTTCGTGGCTCCCGTGGATTCGTCTTGCTCGCGGCAGGCGGG GTCTGTACTATAGTGCCAGTATAAGCGTAGTTGATGACTCTGGTCTGGGT GTGCCTGTAAAGCGTTCCTTGGGGCCTTTCACGGCAGCTCCGATATTCGC GGCAAGGTGACAGTTCGCCCCACAGCATATTGTACCCACAGTGCTGTGTT TTGAATCGACTTAGCCGTTGTCGATAATATTTGTACGTGCCAACTGCAAC GCTGTCGACGGATACATTCCAGGCCTTCGTGTCGGCCGGGCTTGTTTGGC CTCTAGCGAATTTGTCTTGTCCAGCGCAGACTGCAGAGGAGCTCCGTGCG GTGCAGTGTTGCATGGTAGGGAGGCGGTAGTGGTATTATTGAAGGGCACG TCACGTCACGGATACGCAAGTGGCGACACGGTATTTACGTGCAGAAGAAA GCATCTAAGAATGCTGCTGCCGGTTACCCGTCGGACTCGTCGCAAAATGA TATTGGGATGGTTTGAGGATGAAATGTGTGTAGAAATCCAGTGCCGGGTT GCGGGGTAAAGCCCGCGCGCGCGGGGGGGGGGTTCCTGGGGTGTTTGCGG GTGAACGCTGCGGCAATAATACGACGTACCCCCGCCTTGTCATGGGCACA CGAACACGACGACCTGGGGAGCGGTACGCACGTAGAGCTACAGAGCTCGG CCCCAAGATTGTGTGCGACGACGATGTGTCGCAATTTTGCGTGGTTCTAG TCTGCAGACTTGACCCTTTGCCAAGCACGTTATAGTGTATGCATGTACAA ATTAAGCTTCTCGCGGCCCGGCCCACTCAGGCAAAATTTAACGGAAAAAA CTCCTGCCGATTGCACTGGAGAAGTACTGTTCTCGCCACTCACTGCGCTC GTAGTGGCGCCGCAAGTGTGTGCCCTTGCTTGGTGGGCGTACAACACAAT ATGATCTTAGTACGTCAAAAAATGCCCGTGACGCCTAAGTACAGCGCCCA AAACAAATCACTGCCAAGTTTCCAACACCACCTGCAAGCTTGATTCCTAT ACAGTTTTACCACCCAGAGGAGGAGTCCCCGTCACAAAAGTTGAGACCGA GGTCCGCATTTTTTGTGCTTGTATTGACCGTACGTGTATCGGCTTGCACT GCTGCGGCTTCCACAAATAACTACATTCGCACGGTTCTACCACTACTGCT GTGTGAAACCCTGATCGTCACCAATTCACAATGGTATCATATGTGCAACC ATTTGTACGGACTTTGCTAGTACTTCATCGTCACGCCTTCTCTCGACCCA CCTATGTTCAACTTTCTACACTAACTCACTGCAGGAGAGCTCCTAATAAT GAGGGCATCGAAAAAGTACTTACTCTAAAAACGTTCTGGTGCGAGCTGCT GCTATTACTGAGGTACACAAACAGTAATGAGGACCAAATCTCATGATCAT GAATACTACAGTAATACAATACCCAACTACTCCGACCATGAGTACCCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9505:4410..7557-

>mRNA_S-dermatodea_contig9505.17536.1 ID=mRNA_S-dermatodea_contig9505.17536.1|Name=mRNA_S-dermatodea_contig9505.17536.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig9505:4410..7557- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGACTAACGCGGCCACGATACGATGGGGACTAACGCGGCCACGATA
CGGGGTGCATTGCGAGCAGAACGGAAGGAGCTGCTCACGGTGGTGCTACC
ACAGAGCTTGGAGAAGCAGAGCGAGGCCTCTAGGGATTTGATTCAGAAGG
TGCGTAGACTTGGAATGCTGCGTGTGCTCTTATGTTTAAAACAGGTTGCG
CTGGACAAAAATGGGTGCATTGCGAGCAGAACGGAAGGAGCTGCTCACGG
TGGTGCTACCACAGAGCTTGGAGAAGCAGAGCGAGGCCTCTAGGGATTTG
ATTCAGAAGGTGCGTAGACTTGGAATGCTGCGTGTGCTCTTATGTTTAAA
ACAGGTTGCGCTGGACAAAAATGTGACCAACGTGGTGACCAACCCGCAGA
ACGATCACCTCCCCCTGGACGCCGCCTCTCGACTATGCAACTCCGACTTG
CTTTCGCGCACGGAGCAGCTGATCTGCTTCGCCTTCCACGACTCTAAGAC
TATCATCGAATGTTCAAAGGAAGCCAGGTCCCTCAACATGATTGTCACAG
AGCTGTATCTCGATTGAGTGACCAACGTGGTGACCAACCCGCAGAACGAT
CACCTCCCCCTGGACGCCGCCTCTCGACTATGCAACTCCGACTTGCTTTC
GCGCACGGAGCAGCTGATCTGCTTCGCCTTCCACGACTCTAAGACTATCA
TCGAATGTTCAAAGGAAGCCAGGTCCCTCAACATGATTGTCACAGAGCTG
TATCTCGATTGA
back to top