mRNA_S-dermatodea_contig9500.17529.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9500.17529.1
Unique NamemRNA_S-dermatodea_contig9500.17529.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9500.17529.1 vs. uniprot
Match: D8LLF1_ECTSI (Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.120e-7
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:   18 RQSLEIRLA---AASSNLAAT-HKASMDNLNNNS--LQGSPFT-TSKTVRRRSTNFFHVNGEPSCSHSFVSEE 215
            RQSLE RLA   AASS+LAA  H+AS++N+ NNS     SPFT +S TVRR ST+ ++VNGEPS   S VSEE
Sbjct:  433 RQSLESRLADAAAASSSLAAVAHRASLENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGEPS---SVVSEE 502
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BLAST of mRNA_S-dermatodea_contig9500.17529.1 vs. uniprot
Match: A0A6H5KIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 7.340e-6
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:   15 ARQSLEIRLA---AASSNLAAT-HKASMDNLNNNS--LQGSPFT-TSKTVRRRSTNFFHVNGE 182
            ARQSLE RLA   AASSNLAA  H+AS++N+ NNS     SPFT +S TVRR ST+ ++VNGE
Sbjct:  437 ARQSLESRLADAAAASSNLAAVAHRASVENMQNNSPATSLSPFTKSSTTVRRTSTSRYNVNGE 499
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9500.17529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLF1_ECTSI6.120e-760.27Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 ... [more]
A0A6H5KIW8_9PHAE7.340e-661.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9500contigS-dermatodea_contig9500:800..1602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size221
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925412.7461307-CDS-S-dermatodea_contig9500:799..9811622925412.7461307-CDS-S-dermatodea_contig9500:799..981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9500 800..981 +
1694079916.550672-CDS-S-dermatodea_contig9500:799..9811694079916.550672-CDS-S-dermatodea_contig9500:799..981Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9500 800..981 +
1622925412.7628634-CDS-S-dermatodea_contig9500:1563..16001622925412.7628634-CDS-S-dermatodea_contig9500:1563..1600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9500 1564..1600 +
1694079916.561677-CDS-S-dermatodea_contig9500:1563..16001694079916.561677-CDS-S-dermatodea_contig9500:1563..1600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9500 1564..1600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9500.17529.1prot_S-dermatodea_contig9500.17529.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9500 800..1600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9500.17529.1

>prot_S-dermatodea_contig9500.17529.1 ID=prot_S-dermatodea_contig9500.17529.1|Name=mRNA_S-dermatodea_contig9500.17529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
SSPRKPASLSRSDWPRQARTWPPLTKRPWITSTTILFRAVLSRQAKPCGG
GLPTSSTSTASRAVLILSCRRRR
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mRNA from alignment at S-dermatodea_contig9500:800..1602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9500.17529.1 ID=mRNA_S-dermatodea_contig9500.17529.1|Name=mRNA_S-dermatodea_contig9500.17529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=803bp|location=Sequence derived from alignment at S-dermatodea_contig9500:800..1602+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCCCCCCGAAAGCCCGCCAGTCTCTCGAGATCCGACTGGCCGCGGCA
AGCTCGAACTTGGCCGCCACTCACAAAGCGTCCATGGATAACCTCAACAA
CAATTCTCTTCAGGGCAGTCCTTTCACGACAAGCAAAACCGTGCGGCGGC
GGTCTACCAACTTCTTCCACGTCAACGGCGAGGTGGGTCCATGTGGCGAT
GCGTAAATGGCGCCTTCTAATGGCGTCCCGCGATAGGCGGATGTAGGGGG
TGGGGGGGGTTGTGGTGCTTGGCAGGGGAATCGTAGCGACTAATGCTCTG
TTGTAGAACGGGGTACCGGATAGTAGACATCTCTGCCTTACAGTAGATTA
ATCACCAGTTTGCCCTCCGACAATGTACAGAACTTGAACAAGTATAATAG
TACCTACAGGAAGATGACGGATTTGCGAACAAGAACGGCATCGGTAGTGC
GATACAAACGACGATAGTCGCTTTGATCGTACAAGTCTGTGTGTATATGT
CATGTTTGCGTTGAGGTTGGGTTGCGAAATTGGGGCTCATTAGGAATAGT
TTTTTTCCTATTACTTGTGCCCTCTTTGCACGCCGTTTGCTGTCGAAAGT
CCGGAGCGAAGCGCCGTGATCGACCAGCCACGAGCGGAAAGTGCATACGT
CACCCTCCGTGTCGTACAAGGATGCCTCCAGGTCTCCAGGTTTATCCCAG
AAGAGCGGAGGATTTGTGTCTCACTCCTCGCTTATCGCCCCGCCCCGTTT
CCCCCTCGGCCCAGCCGAGCTGTTCTCATTCTTTCGTGTCGGAGGAGGAG
GAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9500:800..1602+

>mRNA_S-dermatodea_contig9500.17529.1 ID=mRNA_S-dermatodea_contig9500.17529.1|Name=mRNA_S-dermatodea_contig9500.17529.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig9500:800..1602+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCCCCCCGAAAGCCCGCCAGTCTCTCGAGATCCGACTGGCCGCGGCA
AGCTCGAACTTGGCCGCCACTCACAAAGCGTCCATGGATAACCTCAACAA
CAATTCTCTTCAGGGCAGTCCTTTCACGACAAGCAAAACCGTGCGGCGGC
GGTCTACCAACTTCTTCCACGTCAACGGCGAGAGTTCCCCCCGAAAGCCC
GCCAGTCTCTCGAGATCCGACTGGCCGCGGCAAGCTCGAACTTGGCCGCC
ACTCACAAAGCGTCCATGGATAACCTCAACAACAATTCTCTTCAGGGCAG
TCCTTTCACGACAAGCAAAACCGTGCGGCGGCGGTCTACCAACTTCTTCC
ACGTCAACGGCGAGCCGAGCTGTTCTCATTCTTTCGTGTCGGAGGAGGAG
GCCGAGCTGTTCTCATTCTTTCGTGTCGGAGGAGGAGG
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