mRNA_S-dermatodea_contig9492.17521.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9492.17521.1
Unique NamemRNA_S-dermatodea_contig9492.17521.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: D7FVG0_ECTSI (Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG0_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 6.400e-33
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    1 LSKPQFNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            L+K Q   L +ANP CVDC A++PDW+SINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWT PL++LL KAGN  AN
Sbjct:  432 LNKAQLTSLWEANPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTTPLVELLLKAGNHNAN 509          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 8.660e-31
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 LSKPQFNKLIQA---NPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            L+K Q   L +A   NP CVDC A++PDW+SINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWT PL++LL +AGN  AN
Sbjct:  689 LNKAQLTSLWEASAANPECVDCGAREPDWSSINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTTPLVELLREAGNHNAN 769          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.000e-25
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   16 FNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLL-DLLEKAGNARAN 234
              +L +ANP CVDC A  PDWASI+LGV+MCIECSGIHRSMGVH+SKVRSL LDRWT  LL  L+E  GN   N
Sbjct:  927 LTRLSKANPQCVDCGAATPDWASISLGVLMCIECSGIHRSMGVHISKVRSLMLDRWTPSLLLQLMESVGNTTFN 1000          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A452GME1_9SAUR (Arf-GAP domain-containing protein n=2 Tax=Archelosauria TaxID=1329799 RepID=A0A452GME1_9SAUR)

HSP 1 Score: 97.4 bits (241), Expect = 1.190e-24
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   13 QFNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            Q  +  + N  CVDCDA +PDWAS+NLG +MCIECSGIHR++G H+S+VRSL LD W G L+ ++   GNA AN
Sbjct:   15 QTVRTARGNSFCVDCDAPNPDWASLNLGSLMCIECSGIHRNLGTHLSRVRSLDLDDWPGELILVMTAIGNALAN 88          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A2P4T4I8_BAMTH (Uncharacterized protein n=2 Tax=Neognathae TaxID=8825 RepID=A0A2P4T4I8_BAMTH)

HSP 1 Score: 101 bits (251), Expect = 2.000e-24
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   13 QFNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            Q  +  + N  CVDCDA +PDWAS+NLG +MCIECSGIHR++G H+S+VRSL LD W G LL L+   GNA AN
Sbjct:  180 QAVRTARGNSFCVDCDAPNPDWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPGELLTLMAAIGNALAN 253          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A2D4GPP7_MICCO (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4GPP7_MICCO)

HSP 1 Score: 96.3 bits (238), Expect = 2.800e-24
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   13 QFNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            Q  + ++ N  CVDCDA +PDWAS+NLG +MCIECSGIHR +G H+S+VRSL LD W   L+ ++   GNA AN
Sbjct:    4 QSIRTVRGNGFCVDCDATNPDWASLNLGALMCIECSGIHRHLGTHLSRVRSLDLDDWPPELVTVMTAIGNALAN 77          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: W7T4W5_9STRA (Ankyrin repeat-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4W5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.280e-24
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   22 KLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            ++ +ANPVC DC   +PDWAS++ G +MCIECSGIHRS+GVHVSKVRSL LD W   L +++E  GN RAN
Sbjct:   82 RVREANPVCADCQRPEPDWASVSFGTVMCIECSGIHRSLGVHVSKVRSLLLDAWPRSLREVMEAMGNLRAN 152          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A7S1Z229_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z229_TRICV)

HSP 1 Score: 103 bits (257), Expect = 3.410e-24
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   10 PQFNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            P   K++QANP C DC A DPDW S+NLGV++CI+CSG+HRS+GVHVSKVRS+ LD  + P  +LL   GN +AN
Sbjct:  415 PAIRKILQANPTCADCGASDPDWVSLNLGVVICIDCSGVHRSLGVHVSKVRSVRLDDLSDPEANLLLALGNKKAN 489          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A7RZU7_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RZU7_NEMVE)

HSP 1 Score: 103 bits (257), Expect = 4.860e-24
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   22 KLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            + ++ N  C DC A  PDWASINLG+ +CIECSG+HRSMGVHVSKVRSLTLD+W G  ++ +E  GN + N
Sbjct:  516 RKVEGNKYCADCSAPRPDWASINLGITVCIECSGVHRSMGVHVSKVRSLTLDKWDGDTVEFMEAMGNTKVN 586          
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Match: A0A7S0VWC6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VWC6_9CRYP)

HSP 1 Score: 99.8 bits (247), Expect = 4.900e-24
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   22 KLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHVSKVRSLTLDRWTGPLLDLLEKAGNARAN 234
            + ++ N  C DC A+DP+WAS+NLGV++C+ECSGIHR++GVHVS+VRSL LD W   L D++ + GNA+ N
Sbjct:  119 RAVEGNSECADCRARDPEWASVNLGVLICLECSGIHRALGVHVSRVRSLLLDSWEPSLSDVMRRLGNAKVN 189          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9492.17521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVG0_ECTSI6.400e-3376.92Centaurin, beta 5, isoform CRA_a n=1 Tax=Ectocarpu... [more]
A0A6H5L2J8_9PHAE8.660e-3172.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCL2_9STRA3.000e-2568.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A452GME1_9SAUR1.190e-2458.11Arf-GAP domain-containing protein n=2 Tax=Archelos... [more]
A0A2P4T4I8_BAMTH2.000e-2460.81Uncharacterized protein n=2 Tax=Neognathae TaxID=8... [more]
A0A2D4GPP7_MICCO2.800e-2456.76Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
W7T4W5_9STRA3.280e-2461.97Ankyrin repeat-containing protein n=1 Tax=Nannochl... [more]
A0A7S1Z229_TRICV3.410e-2460.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A7RZU7_NEMVE4.860e-2460.56Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A7S0VWC6_9CRYP4.900e-2456.34Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9492contigS-dermatodea_contig9492:1118..1907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D7FVG0
Preferred nameAGD4
KEGG koko:K12489
KEGG Pathwayko04144,map04144
GOsGO:0003002,GO:0003674,GO:0005096,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007275,GO:0007389,GO:0008047,GO:0008150,GO:0008289,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009888,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010051,GO:0010087,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030234,GO:0030695,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035091,GO:0042221,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050790,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0097708,GO:0098657,GO:0098772,GO:0099402,GO:1905392
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925411.9259236-CDS-S-dermatodea_contig9492:1117..11951622925411.9259236-CDS-S-dermatodea_contig9492:1117..1195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9492 1118..1195 -
1694079915.991231-CDS-S-dermatodea_contig9492:1117..11951694079915.991231-CDS-S-dermatodea_contig9492:1117..1195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9492 1118..1195 -
1622925411.94055-CDS-S-dermatodea_contig9492:1751..19071622925411.94055-CDS-S-dermatodea_contig9492:1751..1907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9492 1752..1907 -
1694079916.0034416-CDS-S-dermatodea_contig9492:1751..19071694079916.0034416-CDS-S-dermatodea_contig9492:1751..1907Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9492 1752..1907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9492.17521.1prot_S-dermatodea_contig9492.17521.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9492 1118..1907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9492.17521.1

>prot_S-dermatodea_contig9492.17521.1 ID=prot_S-dermatodea_contig9492.17521.1|Name=mRNA_S-dermatodea_contig9492.17521.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=78bp
LSKPQFNKLIQANPVCVDCDAKDPDWASINLGVMMCIECSGIHRSMGVHV
SKVRSLTLDRWTGPLLDLLEKAGNARAN
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mRNA from alignment at S-dermatodea_contig9492:1118..1907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9492.17521.1 ID=mRNA_S-dermatodea_contig9492.17521.1|Name=mRNA_S-dermatodea_contig9492.17521.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=790bp|location=Sequence derived from alignment at S-dermatodea_contig9492:1118..1907- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCAGCAAGCCTCAGTTCAACAAGCTGATCCAGGCGAATCCGGTGTGCGT GGACTGTGACGCTAAAGACCCGGACTGGGCGAGCATCAACCTCGGTGTAA TGATGTGCATAGAGTGCTCGGGGATTCACCGCTCCATGGGGGTGCACGTC TCCAAGGTGAGTCGTGAGCATAGCTTTTGTTATTTTTTTACTACATGCCT GGGCGGCATCGCCCTCCAGGGTGCTAATATTCGCGTCTTGAAGATAATTT TCTGTTTTCCTCTCAAAACACAAATAATTGTCCGGAAGATTTGATCATCG TACGTGTTGACACGTTGCAGAGTTCTAATGCCAGACTGTTTTTTTTCCAA AAGTTGTTTTTTCCTTATTAATAAATTCAAGAGTCAACACTTTTTATAGC GATAAACTGAGGCCCGATTGTGTACACTAAATCCTACACGATTTATTTTT TCAAACTGACACTAAACGCTATACGATTTACATTTTCAAATACAACCACA AGTGAACCACACCGTATCCTCCAAACCCAACCCGCACATCGTCCTGCCAA CGCACACCTCACGGGCGATATCCGTGGCTTGCAACTAGCTTTCTAGTATT CAGGTAAAGTTTTACTAGATTTGGGTGCTTTTCAATTTTGTTGTTCCTCC GTCCAGTAGTATGCATAACATAACGATGCTGTTGGCGCCGCATTTTTTTT TCCCGTCGCCAGGTGAGGTCCCTGACGCTGGACAGATGGACAGGACCGCT GCTGGACCTGCTGGAGAAGGCTGGAAACGCGAGGGCCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9492:1118..1907-

>mRNA_S-dermatodea_contig9492.17521.1 ID=mRNA_S-dermatodea_contig9492.17521.1|Name=mRNA_S-dermatodea_contig9492.17521.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig9492:1118..1907- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCAGCAAGCCTCAGTTCAACAAGCTGATCCAGGCGAATCCGGTGTGCGT
GGACTGTGACGCTAAAGACCCGGACTGGGCGAGCATCAACCTCGGTGTAA
TGATGTGCATAGAGTGCTCGGGGATTCACCGCTCCATGGGGGTGCACGTC
TCCAAGCTCAGCAAGCCTCAGTTCAACAAGCTGATCCAGGCGAATCCGGT
GTGCGTGGACTGTGACGCTAAAGACCCGGACTGGGCGAGCATCAACCTCG
GTGTAATGATGTGCATAGAGTGCTCGGGGATTCACCGCTCCATGGGGGTG
CACGTCTCCAAGGTGAGGTCCCTGACGCTGGACAGATGGACAGGACCGCT
GCTGGACCTGCTGGAGAAGGCTGGAAACGCGAGGGCCAACGTGAGGTCCC
TGACGCTGGACAGATGGACAGGACCGCTGCTGGACCTGCTGGAGAAGGCT
GGAAACGCGAGGGCCAAC
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