prot_S-dermatodea_contig94757.17510.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig94757.17510.1
Unique Name	prot_S-dermatodea_contig94757.17510.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	172

Homology

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A161GCU0_9PHAE (Elongation factor tu (Fragment) n=6 Tax=Phaeophyceae TaxID=2870 RepID=A0A161GCU0_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 7.940e-113
Identity = 165/172 (95.93%), Postives = 172/172 (100.00%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPS+KKGDNKWVDKIYSLM+SVD+YIPTP+RD+DK+FLMAIEDVFSITGRGTVATGKIDRG+VKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN
Sbjct:   13 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSLKKGDNKWVDKIYSLMESVDSYIPTPIRDVDKSFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 184

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: EFTU_COSCS (Elongation factor Tu, chloroplastic (Fragment) n=67 Tax=cellular organisms TaxID=131567 RepID=EFTU_COSCS)

HSP 1 Score: 325 bits (832), Expect = 3.510e-111
Identity = 162/172 (94.19%), Postives = 171/172 (99.42%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPI+TGSALQALDAI+NEP++KKGDNKWVDKIYSLM+SVD+YIPTP+RD+DK FLMAIEDVFSITGRGTVATGKIDRG+VKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN
Sbjct:   24 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPILTGSALQALDAINNEPTLKKGDNKWVDKIYSLMESVDSYIPTPIRDVDKPFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 195

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: Q32544_SACLA (Protein synthesis elongation factor Tu (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q32544_SACLA)

HSP 1 Score: 314 bits (804), Expect = 6.460e-107
Identity = 158/171 (92.40%), Postives = 165/171 (96.49%), Query Frame = 0

Query:    2 PQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            PQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLS Y+FPGDDIPI TGSALQA DAI+NEP  KKGDNKWVDKIY+LMDSVD+YIPTP+RD+DK FLMAIEDVFSITGRGTVATGKIDRG+VKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN
Sbjct:   25 PQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSKYEFPGDDIPIRTGSALQARDAINNEPPFKKGDNKWVDKIYTLMDSVDSYIPTPIRDVDKPFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 195

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 297 bits (761), Expect = 6.530e-98
Identity = 147/172 (85.47%), Postives = 164/172 (95.35%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILLSKQVGVPHIVVFLNKEDQVDD EL+ELVELEVRELLS+YDFPGDDIPIV GSALQAL+ I+ EP++KKGDNKWVDKIYSLMD++D+YIPTP RDI+K FLMAIEDVFSITGRGTVATG+I+RG+VKVGETV+LVGLG+T+ST VTGVEMFQKTL+EG AGDN
Sbjct:  113 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDAELLELVELEVRELLSDYDFPGDDIPIVAGSALQALEIITTEPNLKKGDNKWVDKIYSLMDAIDDYIPTPKRDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVELVGLGNTRSTIVTGVEMFQKTLEEGFAGDN 284

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: Q32748_9STRA (Protein synthesis elongation factor Tu (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=Q32748_9STRA)

HSP 1 Score: 286 bits (732), Expect = 5.910e-96
Identity = 140/172 (81.40%), Postives = 161/172 (93.60%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILLSKQVGVP IVVFLNKEDQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSALQA++AIS+ P+IK+GDN WVDKI++LMD+VD YIPTP RDI+K FLMAIEDVFSITGRGTVATG+I+RG+VKVG+TV++VG+GDT++TT+TG+EMFQKTLDEG AGDN
Sbjct:   24 MPQTREHILLSKQVGVPDIVVFLNKEDQVDDAELLELVELEVRELLSAYDFPGDDIPICPGSALQAVEAISSNPAIKRGDNPWVDKIFALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDTVEIVGVGDTRTTTITGIEMFQKTLDEGFAGDN 195

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A6P1AKF6_9CYAN (Elongation factor Tu n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AKF6_9CYAN)

HSP 1 Score: 288 bits (737), Expect = 2.790e-94
Identity = 141/172 (81.98%), Postives = 161/172 (93.60%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILL+KQVGVP +VVFLNK+DQVDD EL+ELVELEVRELLS+YDFPGDDIP+V GSAL AL+A++ +P+IKKGDN+WVDKIY LMD+VD YIPTP RD+DK FLMA+EDVFSITGRGTVATG+I+RG VKVGETV+LVG+ DTKSTTVTGVEMFQKTLDEG+AGDN
Sbjct:  113 MPQTREHILLAKQVGVPSLVVFLNKQDQVDDEELLELVELEVRELLSSYDFPGDDIPVVAGSALLALEALTKDPNIKKGDNEWVDKIYELMDNVDEYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGETVELVGIKDTKSTTVTGVEMFQKTLDEGMAGDN 284

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: Q8HUC5_SKECO (Elongation factor Tu (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q8HUC5_SKECO)

HSP 1 Score: 284 bits (726), Expect = 9.460e-94
Identity = 138/172 (80.23%), Postives = 160/172 (93.02%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILL+KQVGVPHIVVFLNK+DQVDD EL+ELVELEVRELLS YDFPGDDIPI  GSAL+A++AIS+ P IK+GDN WVDKIY LMD+VD+YIPTP RD++K FLMAIEDVFSITGRGTVATG+I+RG+VKVGETV++VG+ DT++TT+TG+EMFQKTLDEG AGDN
Sbjct:   90 MPQTREHILLAKQVGVPHIVVFLNKQDQVDDDELLELVELEVRELLSQYDFPGDDIPICPGSALRAIEAISSNPEIKRGDNPWVDKIYGLMDAVDSYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVEIVGVVDTQTTTITGIEMFQKTLDEGFAGDN 261

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A1X9PTY9_9RHOD (Elongation factor Tu, chloroplastic n=2 Tax=Rhodellaceae TaxID=661029 RepID=A0A1X9PTY9_9RHOD)

HSP 1 Score: 286 bits (732), Expect = 1.590e-93
Identity = 138/172 (80.23%), Postives = 164/172 (95.35%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILL+KQVGVP +VVFLNKEDQVDD+EL+ELVELEVRELLSNYDFPGDDIPIV+GSAL AL+A+   PSI+KG++KWVDKI+SLMD+VD+YIPTP RD+DK FLMA+EDVFSITGRGTVATG+I+RG+VKVGET+++VGL DT++TT+TG+EMFQKTLDEG+AGDN
Sbjct:  113 MPQTREHILLAKQVGVPTLVVFLNKEDQVDDVELLELVELEVRELLSNYDFPGDDIPIVSGSALLALEAVIKNPSIQKGEDKWVDKIFSLMDAVDDYIPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIVKVGETIEIVGLRDTQTTTITGLEMFQKTLDEGMAGDN 284

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: B0M2B5_9STRA (Elongation factor Tu (Fragment) n=1 Tax=Chattonella marina var. ovata TaxID=859643 RepID=B0M2B5_9STRA)

HSP 1 Score: 281 bits (719), Expect = 3.510e-93
Identity = 138/172 (80.23%), Postives = 156/172 (90.70%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILL+KQVGVPHIVVFLNKEDQVDD EL+ LVELEVRELLSNYDFPGDDIP + GSA QAL  I+  PSI +GD+KWVDKI+ LMD+VD+YIP P RD+DK FLMAIEDVFSITGRGTVATG+I+RG+VKVGETV +VGLG+T+ TTVTG+EMFQKTLDEG+AGDN
Sbjct:   97 MPQTREHILLAKQVGVPHIVVFLNKEDQVDDEELLGLVELEVRELLSNYDFPGDDIPCIPGSAPQALQVIAENPSIGRGDDKWVDKIFELMDAVDDYIPAPERDVDKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVQIVGLGETRETTVTGIEMFQKTLDEGMAGDN 268

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BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Match: A0A7S2H3H0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3H0_9STRA)

HSP 1 Score: 282 bits (721), Expect = 5.260e-93
Identity = 137/172 (79.65%), Postives = 158/172 (91.86%), Query Frame = 0

Query:    1 MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYDFPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPTPVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTKSTTVTGVEMFQKTLDEGVAGDN 172
            MPQTREHILL+KQVGVP++V FLNKEDQVDD EL+ELVELEVRELLSNYDFPGDDIPI  GSALQAL+ I + PS  +GDNKWVDKI+SLMD+VD YIPTPVRD +K FLMA+EDVFSITGRGTVATG+I+RG++ VG+T+++VGLGDT+STTVTGVEMFQKTLD G+AGDN
Sbjct:   28 MPQTREHILLAKQVGVPNLVCFLNKEDQVDDEELIELVELEVRELLSNYDFPGDDIPITVGSALQALETIISLPSTVRGDNKWVDKIFSLMDTVDEYIPTPVRDTEKTFLMAVEDVFSITGRGTVATGRIERGVINVGDTIEIVGLGDTQSTTVTGVEMFQKTLDSGMAGDN 199

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig94757.17510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A161GCU0_9PHAE	7.940e-113	95.93	Elongation factor tu (Fragment) n=6 Tax=Phaeophyce...	[more]
EFTU_COSCS	3.510e-111	94.19	Elongation factor Tu, chloroplastic (Fragment) n=6...	[more]
Q32544_SACLA	6.460e-107	92.40	Protein synthesis elongation factor Tu (Fragment) ...	[more]
A0A7S6ZPC8_9STRA	6.530e-98	85.47	Elongation factor Tu, chloroplastic n=2 Tax=Strame...	[more]
Q32748_9STRA	5.910e-96	81.40	Protein synthesis elongation factor Tu (Fragment) ...	[more]
A0A6P1AKF6_9CYAN	2.790e-94	81.98	Elongation factor Tu n=1 Tax=Kamptonema sp. SIO1D9...	[more]
Q8HUC5_SKECO	9.460e-94	80.23	Elongation factor Tu (Fragment) n=1 Tax=Skeletonem...	[more]
A0A1X9PTY9_9RHOD	1.590e-93	80.23	Elongation factor Tu, chloroplastic n=2 Tax=Rhodel...	[more]
B0M2B5_9STRA	3.510e-93	80.23	Elongation factor Tu (Fragment) n=1 Tax=Chattonell...	[more]
A0A7S2H3H0_9STRA	5.260e-93	79.65	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004161	Translation elongation factor EFTu-like, domain 2	PFAM	PF03144	GTP_EFTU_D2	coord: 123..172 e-value: 8.2E-10 score: 38.9
IPR000795	Transcription factor, GTP-binding domain	PFAM	PF00009	GTP_EFTU	coord: 1..99 e-value: 1.2E-11 score: 44.6
IPR000795	Transcription factor, GTP-binding domain	PROSITE	PS51722	G_TR_2	coord: 1..102 score: 23.384
None	No IPR available	GENE3D	2.40.30.10		coord: 104..172 e-value: 7.5E-24 score: 85.8
None	No IPR available	GENE3D	3.40.50.300		coord: 1..101 e-value: 5.0E-22 score: 80.2
None	No IPR available	PANTHER	PTHR43721:SF19		coord: 1..172
None	No IPR available	PANTHER	PTHR43721	FAMILY NOT NAMED	coord: 1..172
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..124
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 103..172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig94757	contig	S-dermatodea_contig94757:2..517 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig94757.17510.1	mRNA_S-dermatodea_contig94757.17510.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig94757 2..544 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig94757.17510.1 ID=prot_S-dermatodea_contig94757.17510.1|Name=mRNA_S-dermatodea_contig94757.17510.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
MPQTREHILLSKQVGVPHIVVFLNKEDQVDDLELVELVELEVRELLSNYD
FPGDDIPIVTGSALQALDAISNEPSIKKGDNKWVDKIYSLMDSVDNYIPT
PVRDIDKAFLMAIEDVFSITGRGTVATGKIDRGMVKVGETVDLVGLGDTK
STTVTGVEMFQKTLDEGVAGDN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004161	EFTu-like_2
IPR000795	TF_GTP-bd_dom
IPR027417	P-loop_NTPase
IPR009000	Transl_B-barrel_sf