mRNA_S-dermatodea_contig1287.1751.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1287.1751.1
Unique NamemRNA_S-dermatodea_contig1287.1751.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.830e-45
Identity = 143/334 (42.81%), Postives = 178/334 (53.29%), Query Frame = 1 
Query:   16 ALSRKLCEVLGCQVHPSYGLPGTNRLRFCSGHKQEGMVALKNRPXXXXXXXXXXXXXXPRGRAVYXXXXXXXXXVHLLKEALTSGKEEKSRGKRAKDAHTEVVHQGRVDADDEKRNEEVDGHE-AGRGEASKRKAVATGKTSKKRGKMINTADYPAPSTSASSSSPGRSS---RLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAG-----GAVPGG--VEGGEAALLKTGWRKLTPAEILQAAGPKLAQDGTVERSRGGQTAAA 984
            A +R+ CE   C + PSYG PGT+R RFCS HK++ MV+LKNRP                GRAVY         VHLLKEA    KEE  R +R           G V+ D   R+   DG E AG  E S ++       +K+ G   ++  +  P+    + +   S    R A  S + PS +M+LL  AR SA    EASG+GRRAR PSRK LEASGK+  E  QW+T+EKKEEQAR+ K  + QRKAAAAAGLK G+VIEA A           G   GG  + GG + + K  WRKLTP EIL AAG K + +G     RG   A A
Sbjct:  252 AAARRKCEAPDCTIQPSYGDPGTSRPRFCSSHKEKQMVSLKNRPCLFPGCDIRPHYGLSMGRAVYCVSHKKDGMVHLLKEAKNLEKEELKRKRREC---------GEVEEDLADRDSGHDGEEQAGSAEGSLQQRKRKKXKAKREGTKRSSGSHGKPTNKKKNKNTAASPSHLRTAGQSALAPSDDMRLLQSARQSAHE--EASGSGRRARVPSRKVLEASGKMAGETAQWMTKEKKEEQARINKRFRAQRKAAAAAGLKIGEVIEATASPAPRAESEEEGLGSGGTSIRGGGSPVSKASWRKLTPTEILPAAGKKPSAEGAASEVRGNDAAMA 574
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: A0A6H5K6U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6U1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 9.830e-34
Identity = 98/150 (65.33%), Postives = 106/150 (70.67%), Query Frame = 1 
Query:  526 LAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVEGGEAALLKTGWRKLTPAEILQAAGPKLAQDGTVERSRGGQT 975
            +AE+ G  PS EM+LL EAR SARAAAEASG GRRARAPSRK LEASGK+  E  QW+TREKKEEQARL   LKEQRKAAAAAGLK G+VIEA      A GA   G+ G E A     WRKLTPAEILQAAG K A  G   +S  G T
Sbjct:    1 MAEAPGFPPSDEMRLLQEARDSARAAAEASGYGRRARAPSRKFLEASGKIVGESAQWMTREKKEEQARLSLQLKEQRKAAAAAGLKPGEVIEAA----TAAGAGGDGIRG-ENAPWNGSWRKLTPAEILQAAG-KTAGVGKARKSLPGST 144
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: A0A6H5KHQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.960e-27
Identity = 120/298 (40.27%), Postives = 149/298 (50.00%), Query Frame = 1 
Query:  124 MVALKNRPXXXXXXXXXXXXXXPRGRAVYXXXXXXXXXVHLLKEALTSGKEEKSRGKRAKDAHTEVVHQGRVDADDEKRNEEVDGHE-AGRGEASKRKAVATGKTSKKRGKMINTADYPAPSTSASSSSPGRSS---RLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALA-----VSVVAGGAVPGG--VEGGEAALLKTGWRKLTPAEILQAAGPKLAQDGTVERSRGGQTAAA 984
            MV+LKNRP                GRAVY         VHLLKEA    K    R +R           G V+ +  K +   +G E AG  EAS ++   T K  K+ G    +  +  P+    S +   S    R A  S + PS +M+LL  AR SA    EASG+GRRAR PSRK LEA+GK+ +E  QW+T+EKKEEQAR+ K  + QRKAA AAG K G+VIEA A     V     G   G   + GG + +    WRKLTP EIL AAG K   +G     RG   A A
Sbjct:    1 MVSLKNRPCLFPGCDIRPHYGFSMGRAVYCVSHKKDGMVHLLKEAKNLEKGSLERKRRVC---------GEVERNLAKGDSGHNGEEQAGSAEASLQQQK-TKKAPKRGGTKRPSGSHGKPTNKKRSKNTAASPSHRRTAGQSALAPSDDMRLLRNARQSAHE--EASGSGRRARVPSRKVLEAAGKMADETAQWMTKEKKEEQARINKKFRAQRKAAVAAGPKIGEVIEATASPSPRVESEEDGLGSGATSIRGGRSPVSNVSWRKLTPTEILLAAGKKPFVEGAASEVRGSDAAMA 286
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: D7G0V0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V0_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.750e-26
Identity = 110/321 (34.27%), Postives = 154/321 (47.98%), Query Frame = 1 
Query:   34 CEVLGCQVHPSYGLPGTNRLRFCSGHKQEGMVALKNRPXXXXXXXXXXXXXXPRGRAVYXXXXXXXXXVHLLKEALTSGKEEKSRGKRAKDAHTEVVHQGRVDADDEKRNEE-VDGHEAGRGEASKRKAVATGKTSKKRGKMINTADYPAPSTSASSSSPGR-SSRLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVE---------GGEAALLKT--GWRKLTPAEILQAAGPKLAQDGTVER 957
            C   GC   P YGLPG  R  +C  HK+  MV L                  PR +A               K        +++  K+A+    E       D     R+++   G +  RG  S   +   G+   K     +   +P+P+ +A ++ P   ++RLA+SSGM PSVE  +L +AR  A+  AEASG GRR RAPSR+ALEA+G+L+  G QW++REKK E  RLK  L++QRK   AAGLK+G V+E          A   G+E         GG   L  +  GW+K++P E+L A  P   Q GT +R
Sbjct:   53 CLFPGCDARPDYGLPGATRAVYCFSHKKGPMVQLFKETPALPDNPGKATTGKPRSQAPTEPAAAAASVG--TKNPRAPSNIDRNAAKKARRGQQETEEDNDADVSGTHRSKKRSSGGKDERGAISS--STVAGENLTKTTAKTSAPSFPSPAPAAEANPPSSPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRLKAELRQQRKQYQAAGLKSGVVLEMFVPEATGTEAAGDGIEERDGEVRGEGGATTLRGSNPGWQKVSP-EVLSA--PSSKQHGTGQR 366
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.530e-23
Identity = 117/270 (43.33%), Postives = 142/270 (52.59%), Query Frame = 1 
Query:    7 KFSALSRKLCEVLGCQVHPSYGLPGTNRLRFCSGHKQEGMVALKNRPXXXXXXXXXXXXXXPRGRAVYXXXXXXXXXVHLLKEALTSGK-EEKSRGKRAKDAHTEVVHQGRVDADDEKRNEEVDGHEAGRGEASKRKAVATGKTSKKRGKMINTADYPAPSTSASSSSPGRSSRLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAV 813
            K   L RKLCEV GC V PS+G PGT + RFC+GHKQEG V+LKNRP   XXXX              XXXXXXXXX HLLKEA + GK +E    +R K   +    +   DA   KR  +    E  +G+ S        KT KK+ K     D   P    +  SP    R A+                             GRRARAPSRK LEASG++ +EG Q LT+ KKEE+ RLK+ +KEQR+AA +AGLK G+VIEA  V
Sbjct:  204 KGQTLHRKLCEVPGCNVQPSFGAPGTGKPRFCTGHKQEGHVSLKNRPCIFXXXXTRPHYGPSMXXXXXXXXXXXXXXXHLLKEAESLGKLQELDTQRRRKLLKSTCKKERSADA---KRPNKKAKRET-KGDVSPEVEGKGQKTKKKKDKS----DKGVPQREGADESP----RAADDXXXXX----------------------XGRRARAPSRKFLEASGRVADEGAQLLTKAKKEEENRLKREMKEQRRAAKSAGLKLGEVIEATTV 439
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: A0A6H5LLY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLY6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.770e-23
Identity = 113/319 (35.42%), Postives = 158/319 (49.53%), Query Frame = 1 
Query:   34 CEVLGCQVHPSYGLPGTNRLRFCSGHKQEGMVALKNRPXXXXXXXXXXXXXXPRGRAVYXXXXXXXXXVHLLKEALTSGKEEKSRGKRAKDAH-TEVVHQGRVDADDEKRNEEVDGHEAGR---GEASKRKAVA----TGKTSKKRGKMINTADYPAPSTSASSSSPG-RSSRLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVE---------GGEAALLKT--GWRKLTPAEILQAAGPK 930
            C   GC   P YGLPG  R  +C  HK+  MV L                  PR +      XXXXXX             +K R  R  D +  +   +GR + +++   +    H++ +   G   +R A++    TG+   K       +  P+P+ +A    P   ++RLA+SSGM PSVE  +L +AR  A+  AEASG GRR RAPSR+ALEA+G+L+  G QW++REKK E  RLK  L+ QRK   AAGLK+G V+E    +     A   G+E         GG    + +  GW+K++P E L AA PK
Sbjct:  280 CLFPGCDARPDYGLPGATRAVYCFSHKKGPMVQLFKETPALPDSAGKATTGKPRSQVPTESSXXXXXXXXXXXXXXXXXGAKKKRAPRNIDRNGAKNARRGRQETEEDNNADGSGTHKSEKRSSGGKDERGAISSSTVTGENLTKTTAKPAASSLPSPAPAAEPKPPSFPNNRLADSSGMAPSVEFLVLRQAREDAKTEAEASGLGRRPRAPSRRALEAAGRLKGTGAQWMSREKKAEDLRLKAELRLQRKRYQAAGLKSGVVLEMFVPAATGTEAAGDGIEERDGEVRGEGGATTPIGSNPGWQKVSP-ETLSAASPK 597
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: A0A6H5L360_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L360_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.550e-21
Identity = 117/317 (36.91%), Postives = 156/317 (49.21%), Query Frame = 1 
Query:   28 KLCEVLGCQVHPSYGLPGTNRLRFCSGHKQEGMVAL-KNRPXXXXXXXXXXXXXXPRGRAVYXXXXXXXXXVHLLKEALTSGKEEKSRGKRAKDAHTEVVHQGRVDADDE---KRNEEVDGHEAGRGEASKRKAVATGKTSKKRGKMINTADYPAPSTSASSSSPGRSS-RLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVEG------GEAALL-----KTGWRKLTPAEILQAAGPK 930
            + C   GC   P YGLPG  R  +C  HK+  MV L K  P               +G A  XXXXXXX  V   K    S  + ++  K+A+    E      VD+  +   K+     G +   G +S   A  TG+   K     + +  P P+ +   + P  S+ RLA+SSGM PSVE  +L +AR +A+  AEASG GRR RAPSR+ALEA+G+L+  G QW++REKK E  RLK  L+ QRK   AAGLK+G V+E    +     A   G+E       GE           GW K++P E L A   K
Sbjct:  288 RTCLFPGCDARPDYGLPGATRAMYCFAHKKAPMVQLFKELPALPNKAGNATTGKRSQGPAAXXXXXXXXS-VGANKTRAPSNID-RNGAKKARRGPQETEEDNDVDSGGKHTSKKRRSTGGKDERGGISS---AKVTGENLTKPTVKTSASSLPPPAPAFEPNPPSSSNNRLADSSGMAPSVEFLVLRQAREAAKTEAEASGLGRRPRAPSRRALEAAGRLKGIGAQWMSREKKAEDLRLKAELRLQRKQYQAAGLKSGVVLEMFVPAATGTEAAGDGIEQRDGEVRGEGGATTPRGSNPGWHKVSP-EALSAPSSK 598
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: A0A6H5L640_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L640_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.460e-19
Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:  499 SSSPGRSSRLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVEGGEAALLKTG-----------WRKLTPAEILQA 918
            SS P RS    +++GM PSVE  LL +AR +A+  A  SG GRR RAPSR+ALEASG+L+++G QW+TRE+K E+AR+K  L+EQR+   AAG K+G V+EA        G V  GV GG A  +  G           W+K++P E+L A
Sbjct:  117 SSPPNRSG---DTAGMAPSVEFHLLRQAREAAKKEAAXSGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARIKAELREQRRQYKAAGFKSGVVLEAFVAKAAGTGTVGDGVGGGVAGKIGVGSATTKHGRDPAWQKVSP-EMLAA 263
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: D8LEM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM4_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.710e-19
Identity = 74/158 (46.84%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:  499 SSSPGRSSRLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVEGGEAALLKTG-----------WRKLTPAEILQAAGPKLAQ 939
            SS P RS    +++GM PSVE  LL +AR  A+  A ASG GRR RAPSR+ALEASG+L+++G QW+TRE+K E+AR K  L+EQR+   AAGLK+G V+EA        G    GV GG A  L  G           W+K++P   + AA P+  Q
Sbjct:  167 SSPPNRSG---DTAGMAPSVEFHLLRQAREVAKKEAAASGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTAGDGVGGGVAGELGVGSATTKHGRDPAWQKVSPG--ILAASPEQEQ 319
[Close]
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.010e-19
Identity = 108/282 (38.30%), Postives = 146/282 (51.77%), Query Frame = 1 
Query:   16 ALSRKLCEVLGCQVHPSYGLPGTNRLRFCSGHKQEGMVALKNR-PXXXXXXXXXXXXXXP-RGRAVYXXXXXXXXXVHLL--------KEALTSGKEEKSRGKRAKDAHTEVVHQG--RVDADDEKRNEEVDGHEAGRGEASKRKAVATGKTSKKRG------KMINTADYPAPSTSASSSSPGRSSRLAESSGMTPSVEMKLLLEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQARLKKTLKEQRKAAAAAGLKAGQVIEAL 807
            AL  + C   GC   P+YGLPG  R  +C  HK+  MV L ++ P              P  G+   XXXXXXXXX   +        K    S  +E ++G  +KD      +QG  ++  +++K N  V   E   G  +   A  T + S K        K  + A  PA + +       R S      GM+PSVEM +L +AR +A+  AEASG GRRARAPSR+ALEASG+LR +G QW+TREK+ EQAR+   L+E+RK +  AGL  G V+EA 
Sbjct:  189 ALQNRSCLFPGCDARPTYGLPGAARAVYCFSHKKGSMVNLFSQAPAVNNNEEKRVTAVAPTEGKRKKXXXXXXXXXXXSMTADQRGAKKARRESSIKEDNKGATSKDGGG---YQGAKKIRDNEKKVNRGVGTSERSVGAIATAAAAGTSEMSTKSSAAKPPVKSTHIAKEPADTMALPPQPTNRPSE-----GMSPSVEMLILRQAREAAKKEAEASGGGRRARAPSRRALEASGRLRGDGAQWMTREKRAEQARVNTELREKRKKSREAGLTVGVVLEAF 462
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1287.1751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G084_ECTSI2.830e-4542.81Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K6U1_9PHAE9.830e-3465.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KHQ6_9PHAE5.960e-2740.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V0_ECTSI1.750e-2634.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH38_ECTSI2.530e-2343.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5LLY6_9PHAE2.770e-2335.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L360_9PHAE2.550e-2136.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L640_9PHAE1.460e-1947.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEM4_ECTSI1.710e-1946.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGW8_ECTSI2.010e-1938.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1287contigS-dermatodea_contig1287:16740..21573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size2551
Cds size1254
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1287.1751.1prot_S-dermatodea_contig1287.1751.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1287 17914..21189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.2886403-UTR-S-dermatodea_contig1287:16739..179131622924265.2886403-UTR-S-dermatodea_contig1287:16739..17913Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1287 16740..17913 -
1694079135.9855278-UTR-S-dermatodea_contig1287:16739..179131694079135.9855278-UTR-S-dermatodea_contig1287:16739..17913Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1287 16740..17913 -
1622924265.357322-UTR-S-dermatodea_contig1287:21189..212331622924265.357322-UTR-S-dermatodea_contig1287:21189..21233Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1287 21190..21233 -
1694079136.0392387-UTR-S-dermatodea_contig1287:21189..212331694079136.0392387-UTR-S-dermatodea_contig1287:21189..21233Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1287 21190..21233 -
1622924265.3678331-UTR-S-dermatodea_contig1287:21494..215731622924265.3678331-UTR-S-dermatodea_contig1287:21494..21573Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1287 21495..21573 -
1694079136.0472972-UTR-S-dermatodea_contig1287:21494..215731694079136.0472972-UTR-S-dermatodea_contig1287:21494..21573Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1287 21495..21573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.3044577-CDS-S-dermatodea_contig1287:17913..179141622924265.3044577-CDS-S-dermatodea_contig1287:17913..17914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 17914..17914 -
1694079135.997995-CDS-S-dermatodea_contig1287:17913..179141694079135.997995-CDS-S-dermatodea_contig1287:17913..17914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 17914..17914 -
1622924265.3154707-CDS-S-dermatodea_contig1287:18335..192021622924265.3154707-CDS-S-dermatodea_contig1287:18335..19202Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 18336..19202 -
1694079136.0067978-CDS-S-dermatodea_contig1287:18335..192021694079136.0067978-CDS-S-dermatodea_contig1287:18335..19202Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 18336..19202 -
1622924265.3270257-CDS-S-dermatodea_contig1287:19774..199961622924265.3270257-CDS-S-dermatodea_contig1287:19774..19996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 19775..19996 -
1694079136.0149207-CDS-S-dermatodea_contig1287:19774..199961694079136.0149207-CDS-S-dermatodea_contig1287:19774..19996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 19775..19996 -
1622924265.3369474-CDS-S-dermatodea_contig1287:20375..205011622924265.3369474-CDS-S-dermatodea_contig1287:20375..20501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 20376..20501 -
1694079136.023085-CDS-S-dermatodea_contig1287:20375..205011694079136.023085-CDS-S-dermatodea_contig1287:20375..20501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 20376..20501 -
1622924265.3479154-CDS-S-dermatodea_contig1287:21151..211891622924265.3479154-CDS-S-dermatodea_contig1287:21151..21189Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 21152..21189 -
1694079136.0312164-CDS-S-dermatodea_contig1287:21151..211891694079136.0312164-CDS-S-dermatodea_contig1287:21151..21189Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1287 21152..21189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1287.1751.1

>prot_S-dermatodea_contig1287.1751.1 ID=prot_S-dermatodea_contig1287.1751.1|Name=mRNA_S-dermatodea_contig1287.1751.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=418bp
MVALKNRPCLFPGCNTRPHYGLPRGRAVYCSKHKKKGMVHLLKEALTSGK
EEKSRGKRAKDAHTEVVHQGRVDADDEKRNEEVDGHEAGRGEASKRKAVA
TGKTSKKRGKMINTADYPAPSTSASSSSPGRSSRLAESSGMTPSVEMKLL
LEARVSARAAAEASGTGRRARAPSRKALEASGKLRNEGVQWLTREKKEEQ
ARLKKTLKEQRKAAAAAGLKAGQVIEALAVSVVAGGAVPGGVEGGEAALL
KTGWRKLTPAEILQAAGPKLAQDGTVERSRGGQTAAAAESGLVAYKQDEN
EAPVAAARNVEELVTENQSEAHSAGGANSVTAGNGRAMELPVDKRAKGGG
QNGSAADEAKTDYTSDHEGIQGSGSEKEEKAKRGSTGGAETGACTHVCVS
PSGAEQATFGADVSAHF*
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mRNA from alignment at S-dermatodea_contig1287:16740..21573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1287.1751.1 ID=mRNA_S-dermatodea_contig1287.1751.1|Name=mRNA_S-dermatodea_contig1287.1751.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4834bp|location=Sequence derived from alignment at S-dermatodea_contig1287:16740..21573- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTCCAAATTTTCAGCGCTGTCCCGGAAGCTGTGCGAGGTGCTCGGTTG
CCAGGTCCACCCAAGTTACGGCCTACCTGGTGAGTATGTCGTTCTCGAGG
CCAATTAGCGGGTTTTCTCCGCGTAAAGTGGGTGCTTGAGACACGCCGAA
ATAATGTGGCCAGCGTTGAGGTTCGTGCGTGATGGAGCAGATGACGCGCG
ACGTTTGGTTGGTATTGTGGGGTCGTGCGCGCATGGTCTGGAACCACATT
GGTGGTTTGCCGTACAATTTTGAAGGACGTGGTTTTGAGATTCTGTGCCC
GCCTGATTTCCCGCCTGTCTCCGGATGCTGCCCTATCCAGGAACCAATCG
ACTGCGGTTCTGCAGCGGCCACAAGCAGGAAGGCATGGTGGCCCTCAAGA
ATCGTCCGTGCCTATTTCCCGGGTGAGAATTGCGACGAATCCAACGTTTA
CACGCAGTTTGTAAGATGGCTAGCTTGGTCGGTGAAGAGAACAGTAGTGA
AGTGGTCGGAGTCGACGGCGACCCCTTGGCCTTCTTGTGCAGTGTGCTTT
ATTTTGGTTCCTTACACCGCATAGAACCGGCTTGCCCATCTTGATAGTCC
GCGGTCGCGAAGGATAATCCCATTTCTCTCCAGTGCCAGCCGGAACTTTT
TATCGCGCATCTGGGTCGGTCAAGTCCCCCAGCACGCCGATGTTCATCGG
AGTTGGCTTACTCGCGCTCTTGCGCTTTGCTGCAAGAAGATAAATAATCT
CAAGTGCCGTTCCAAACCCCAACCTTCCGCCGGGCGGGGCGTCGCCGCCA
CCGATCCACCCACCGGGGCGTAATGACTCGGATAACACTTATTAAATCTA
TGTCGCGGTGGTTGATAAAGCCTTTTCTAGTTTCCGCGACAATTTGAGAA
ATATGTGCACTCTATCCAGAGAACAACCCCAGGGTGCTGCGGTTTATCTG
GACTGCCCAGAAGTTCCCACACATACGTCAGTACGCCAAGACAATTTACG
CATCCCCGACCCATTTCAGCCCGGCTGCACCACACCCCGTCCTGGCCACC
GCGGCGCTGCTCGTCGTTGTAGATGCAACACCAGGCCTCACTACGGGCTA
CCACGGGGGCGAGCCGTGTACTGCTCCAAGCACAAGAAGAAAGGCATGGT
GCATCTCCTTAAAGAGGCGCTGACATCAGGAAAAGAGGAGAAATCGAGGT
ACAGGCAAATTGCGAATTTCTCTCCCTCTAGGGTTTGGGAACGCTCTGGG
CTCTCAAAACAAAGTTCAGTGGTTACAATTTGACGCACCACAGCTTCCCG
TACCCTGACTTGCGTTCTGCTGCCCCAACGATGGCCCTTCGTTGGACGTT
TATGTACGGCTTGGTCTGGTTGGCGTGAACTTTATCGTAAGGACAGCTGG
GTCGGTTCATGTGCTGTGTCCAACTCGGTCAATAAGGCTATGCTACAGAG
GATTAAAGCTCTTTCTTGGCCTTTGTTTTTCCTTCCCATCTCTTCTGTGC
AGGCAGCGCGATGAATCTTCTCCTCCACCGCAGAAGCGTCGTGTGCTGAC
AACGCAACCGAAGGTTGCGAGGCACAGAGGCAAGCGAGCGAAAGACGCCC
ACACGGAGGTGGTTCATCAAGGACGGGTCGACGCCGACGACGAGAAGCGG
AATGAGGAGGTCGACGGGCATGAGGCCGGAAGGGGGGAGGCCTCTAAGCG
TAAAGCGGTGGCGACTGGAAAAACATCTAAGAAAAGGGGGAAAATGATCA
ATACCGCCGATTACCCGGCGCCGTCGACATCGGCCTCTTCATCCTCGCCG
TCGTCGTCCGAGGCGGCGGCGTTGCTATTGGTGCACGACGAAGGTGATTA
CGCTGGCATAGCAGGTGTGTTTCTCATAGACGATGCAATCCGGGTTGGCG
TTGACGCGTGAAGCGGACAATGCCGTAGCCCGTCGATACTGCAAGGATCG
CTCCCTGTTCGGTTCAGCTTTGTTCTTAATTCCAGCTAGGATATGTTGCG
AATACCTTCCCTATTACGGGGGACCATAGTTAACAGGTACAAATTTGCCA
CAAGTCTCAACCTACAAAAATCAGAATAGGCTGGGATTACCGAGATTTCA
AGGTCGATGTTCTTGTGTATGGCCATCTCTCGTGTCTTTTTGTTTTCATG
AGATTTTGTTTGTTTGGGTACTCATGGTCGGAATTGGGTGGGTATTCATA
CTTACGAGATTTGGTCCTGATTACTGTGTACCTCCATAATACGTCAACCG
ATCCCCCACCCCACTCCCACATGCTGTCTTTCCCAGCCCCAGCTCCGACG
ACCCTTCCTGAAACCTCAAAAGATGCCGCGACAGCCAGCACCGCGCCACC
TCCGGCGCCCGCTGAACAGAGCGGTCGCTCCTCGCGCTTGGCAGAGTCCT
CGGGCATGACCCCTTCCGTTGAAATGAAGCTTCTCCTTGAGGCCAGGGTT
TCCGCGCGGGCGGCGGCCGAGGCAAGCGGCACCGGAAGAAGGGCGCGCGC
GCCGTCGCGCAAGGCCTTGGAGGCGTCTGGAAAGCTGCGCAACGAAGGCG
TTCAGTGGCTGACCAGGGAGAAGAAGGAGGAACAGGCCAGGCTCAAGAAA
ACCCTCAAGGAGCAGCGCAAAGCTGCAGCGGCGGCGGGTCTCAAGGCTGG
GCAGGTGATCGAAGCGCTGGCTGTGTCCGTAGTCGCTGGTGGAGCTGTCC
CGGGTGGCGTAGAAGGTGGCGAGGCGGCGCTGCTGAAGACCGGCTGGCGT
AAGCTCACCCCAGCTGAAATTTTGCAGGCGGCTGGGCCGAAACTGGCGCA
GGATGGGACTGTCGAACGCTCGCGTGGCGGACAAACTGCAGCCGCGGCAG
AGAGCGGTCTGGTCGCATACAAGCAGGATGAAAACGAGGCTCCAGTCGCT
GCTGCACGGAACGTCGAGGAGTTGGTGACGGAAAACCAGTCGGAAGCTCA
TAGCGCCGGCGGTGCAAACTCGGTAACGGCTGGAAACGGCAGGGCCATGG
AGTTACCTGTTGACAAGAGAGCAAAGGGAGGCGGGCAAAACGGTTCCGCG
GCCGATGAGGCTAAGACGGACTACACCAGCGACCACGAAGGTATTCAGGG
CAGTGGTTCAGAGAAGGAAGAGAAAGCTAAGCGCGGGAGCACTGGTGGAG
CGGAGACCGGTGCTTGTACACATGTGTGCGTGTCCCCGAGCGGTGCCGAG
CAAGCGACATTCGGGGCCGACGTCAGCGCACACTTTTGGTGAGCGTGTAT
TGAGATGTACGGCGTGGTTCTACACCGCGCATGATGACAGTTGTTGGTGT
TTGTTGTACGTCTGATGGCTTTGGGAGAGTCACCAGCACACAAGAGTTGT
GTGGCTGAAAGGTGATCCCGAGGTTAGGTGTGATTCGCGATCAGACCTGG
CGTACGTCTATGCCTCCATTGAATGCCATCATTATTCGTTCTGCCGGCGC
TCTGACAACAGCGGGGGCCATGCTTGTCTCTTGCCGGTATGCCGAGCGCC
TATACCCTATACACCGAGTGCCTATTGCCGTCCCTATGTGCCGATATCGG
GCAAGAACACGCCTTTCCAGGCCAACTTTCCGGCGGCAACGCTAACGACT
CCACCGTTTCGCTTCCTTCCTTTATACCTTGGATTGCACCTACTCTCATG
GCAACTGAGATGCACCACCTGTTCAGCATGCGGAATGCACCACCTGTTCA
GCATGCGGAAGATATCTGGCAATAAGTGAAGGTTGCGGTCGACGTTCACG
GTGGATTGCGCGGAGAATCCCAGAATTGGAATCTGGAGTTTGCACGGGCG
CGCGTACCAATCAGTTGCATATTCATATAATTTCTCGGAAAGGCGAGGGT
TTTTTCGGATTCATCGGCGAGAGGGTGTGGCTACTTCGGCCAGTCTGCAT
TGGTGCCGATTTAGATCTCAGGCTAACGCACAACGCCAACGGGTTGGTCC
GACGAACATCCGGTGGCGTAACATCTGTTCAGCTAGCATACCTACCACTG
TTTGGTTGTCTACTGCTCGGGTTCCATCCACGGCAGTGGGTATCCTCAGG
ACCACAGCTGTTCGGTTTCTCGAAGGGGTTTATGATTGGAGACTCGTCGA
TCGCCCTCGATTCATATTAGTGTATCATGGATTTTGATTTTGTGTGGCGA
GGCCCCGGCGGTTCGTCACTAAAGGTTTGTCTACAACGTTGGCGGGGATG
ACGTGCGTTGGTCATACTATCTAAACTGTCTACTGTTGTAAGTCGTTTTG
TGGTTTGGTCCTTTTTTCTGCCCTACATTCAGGAGTGGCTGCCTGTACTC
TTGAGCACCGGTGACGATAGTGGCCTACGTTGTCGGTCACGCTCAAACCG
GGGCACGCGCGTACGTCGTCGTAAGGAATTATGCAGTTTGTTCGTGCTGT
ACCGAATTGGTTTGTGGTCAACTGGCGTTGCAGAAATATGAATATGGCCG
AACTACAGTACTGCTGTTGCGCAGCCGTGCTTCGGGGTTGATTTTCGGGC
CATTCGCGCTAATTGGTTCAGTAAGGAACGCGTGACCGTGTCCAGCCTCA
GTACATTACCTTCCCCTGCGTTTGGCGTCGTTTTTAGGCAACCTCGATGA
TACAGTATGTTCCACAATGGTTCAGCCGAATAATACCGCCCAGAGCGGCG
CCCGTGCGCCCGTGCGCGCTACAGCTGGTGGTGCTCAGTGAACGAAATAT
TGGGAGCATCTCATGGGTGGTACTTGTAGTGCAGTTGTGTTGGTATGTTG
CACTTGCGTGCGCACTTGGCAGGCTAAGGACGGAGAGGTGTAGATTATGC
AATCGCAATTAAAAACCTTTCGGGCGTATTTTGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1287:16740..21573-

>mRNA_S-dermatodea_contig1287.1751.1 ID=mRNA_S-dermatodea_contig1287.1751.1|Name=mRNA_S-dermatodea_contig1287.1751.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at S-dermatodea_contig1287:16740..21573- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGCCCTCAAGAATCGTCCGTGCCTATTTCCCGGATGGTGGCCCTC
AAGAATCGTCCGTGCCTATTTCCCGGATGCAACACCAGGCCTCACTACGG
GCTACCACGGGGGCGAGCCGTGTACTGCTCCAAGCACAAGAAGAAAGGCA
TGGTGCATCTCCTTAAAGAGGCGCTGACATCAGGAAAAGAGGAGAAATCG
AGATGCAACACCAGGCCTCACTACGGGCTACCACGGGGGCGAGCCGTGTA
CTGCTCCAAGCACAAGAAGAAAGGCATGGTGCATCTCCTTAAAGAGGCGC
TGACATCAGGAAAAGAGGAGAAATCGAGAGGCAAGCGAGCGAAAGACGCC
CACACGGAGGTGGTTCATCAAGGACGGGTCGACGCCGACGACGAGAAGCG
GAATGAGGAGGTCGACGGGCATGAGGCCGGAAGGGGGGAGGCCTCTAAGC
GTAAAGCGGTGGCGACTGGAAAAACATCTAAGAAAAGGGGGAAAATGATC
AATACCGCCGATTACCCGGCGCCGTCGACATCGGCCTCTTCATCCTCGCC
AGGCAAGCGAGCGAAAGACGCCCACACGGAGGTGGTTCATCAAGGACGGG
TCGACGCCGACGACGAGAAGCGGAATGAGGAGGTCGACGGGCATGAGGCC
GGAAGGGGGGAGGCCTCTAAGCGTAAAGCGGTGGCGACTGGAAAAACATC
TAAGAAAAGGGGGAAAATGATCAATACCGCCGATTACCCGGCGCCGTCGA
CATCGGCCTCTTCATCCTCGCCCGGTCGCTCCTCGCGCTTGGCAGAGTCC
TCGGGCATGACCCCTTCCGTTGAAATGAAGCTTCTCCTTGAGGCCAGGGT
TTCCGCGCGGGCGGCGGCCGAGGCAAGCGGCACCGGAAGAAGGGCGCGCG
CGCCGTCGCGCAAGGCCTTGGAGGCGTCTGGAAAGCTGCGCAACGAAGGC
GTTCAGTGGCTGACCAGGGAGAAGAAGGAGGAACAGGCCAGGCTCAAGAA
AACCCTCAAGGAGCAGCGCAAAGCTGCAGCGGCGGCGGGTCTCAAGGCTG
GGCAGGTGATCGAAGCGCTGGCTGTGTCCGTAGTCGCTGGTGGAGCTGTC
CCGGGTGGCGTAGAAGGTGGCGAGGCGGCGCTGCTGAAGACCGGCTGGCG
TAAGCTCACCCCAGCTGAAATTTTGCAGGCGGCTGGGCCGAAACTGGCGC
AGGATGGGACTGTCGAACGCTCGCGTGGCGGACAAACTGCAGCCGCGGCA
GAGAGCGGTCTGGTCGCATACAAGCAGGATGAAAACGAGGCTCCAGTCGC
TGCTGCACGGAACGTCGAGGAGTTGGTGACGGAAAACCAGTCGGAAGCTC
ATAGCGCCGGCGGTGCAAACTCGGTAACGGCTGGAAACGGCAGGGCCATG
GAGTTACCTGTTGACAAGAGAGCAAAGGGAGGCGGGCAAAACGGTTCCGC
GGCCGATGAGGCTAAGACGGACTACACCAGCGACCACGAAGGTATTCAGG
GCAGTGGTTCAGAGAAGGAAGAGAAAGCTAAGCGCGGGAGCACTGGTGGA
GCGGAGACCGGTGCTTGTACACATGTGTGCGTGTCCCCGAGCGGTGCCGA
GCAAGCGACATTCGGGGCCGACGTCAGCGCACACTTTTGCGGTCGCTCCT
CGCGCTTGGCAGAGTCCTCGGGCATGACCCCTTCCGTTGAAATGAAGCTT
CTCCTTGAGGCCAGGGTTTCCGCGCGGGCGGCGGCCGAGGCAAGCGGCAC
CGGAAGAAGGGCGCGCGCGCCGTCGCGCAAGGCCTTGGAGGCGTCTGGAA
AGCTGCGCAACGAAGGCGTTCAGTGGCTGACCAGGGAGAAGAAGGAGGAA
CAGGCCAGGCTCAAGAAAACCCTCAAGGAGCAGCGCAAAGCTGCAGCGGC
GGCGGGTCTCAAGGCTGGGCAGGTGATCGAAGCGCTGGCTGTGTCCGTAG
TCGCTGGTGGAGCTGTCCCGGGTGGCGTAGAAGGTGGCGAGGCGGCGCTG
CTGAAGACCGGCTGGCGTAAGCTCACCCCAGCTGAAATTTTGCAGGCGGC
TGGGCCGAAACTGGCGCAGGATGGGACTGTCGAACGCTCGCGTGGCGGAC
AAACTGCAGCCGCGGCAGAGAGCGGTCTGGTCGCATACAAGCAGGATGAA
AACGAGGCTCCAGTCGCTGCTGCACGGAACGTCGAGGAGTTGGTGACGGA
AAACCAGTCGGAAGCTCATAGCGCCGGCGGTGCAAACTCGGTAACGGCTG
GAAACGGCAGGGCCATGGAGTTACCTGTTGACAAGAGAGCAAAGGGAGGC
GGGCAAAACGGTTCCGCGGCCGATGAGGCTAAGACGGACTACACCAGCGA
CCACGAAGGTATTCAGGGCAGTGGTTCAGAGAAGGAAGAGAAAGCTAAGC
GCGGGAGCACTGGTGGAGCGGAGACCGGTGCTTGTACACATGTGTGCGTG
TCCCCGAGCGGTGCCGAGCAAGCGACATTCGGGGCCGACGTCAGCGCACA
CTTTTGAA
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