mRNA_S-dermatodea_contig9468.17499.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9468.17499.1
Unique NamemRNA_S-dermatodea_contig9468.17499.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A6H5KK66_9PHAE (Imidazole acetol-phosphate transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK66_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 2.000e-122
Identity = 184/221 (83.26%), Postives = 207/221 (93.67%), Query Frame = 1
Query:    4 KVIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQTVAAIAA 666
            +V+RAAT S+KILFLCSPGNPTGKS+PASVVRDI  GGFDG++VVDEAYVDFSG++SACSLIDELD VVVLQTLSKAFG+AAIR +G AYANE IIQYMNNVKAPYNVNRL+QEVAV+AL DRSLY +RV TIL+ER +LQE LRR+SFV+EVKESDANFFLVQVD+AQE+YKRMA+NGVVVRFRGNELHCKDCLR+TVGTAEEN RLLELLE+TVA I+A
Sbjct:  180 EVLRAATPSSKILFLCSPGNPTGKSIPASVVRDIVRGGFDGVVVVDEAYVDFSGKDSACSLIDELDTVVVLQTLSKAFGLAAIR-MGFAYANEHIIQYMNNVKAPYNVNRLTQEVAVRALKDRSLYEDRVTTILDERIRLQEALRRYSFVKEVKESDANFFLVQVDHAQEIYKRMANNGVVVRFRGNELHCKDCLRVTVGTAEENNRLLELLEKTVATISA 399          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A836C9P4_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9P4_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.940e-90
Identity = 150/224 (66.96%), Postives = 180/224 (80.36%), Query Frame = 1
Query:    7 VIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFS------GEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQTVAAI 660
            ++RA T +TK++FLCSPGNPT  SVP  VVR + +  FDGI+VVDEAYVDF+      G E+AC+L+  L+RVVVLQTLSKAFGMAAIR VGMAYA+ D++Q MNNVKAPYNVNRLS+EVA  ALS+ SLYR+RVA +LE+R KL ETLR   +VR V  SDANFFLV++++A  +Y  MA+NGVVVRFRGNELHC DCLRITVGTAEEN +LLELL  TV  +
Sbjct:  184 LLRAVTPATKMVFLCSPGNPTAVSVPLDVVRRVHDA-FDGIVVVDEAYVDFALAARGGGGETACALVGALERVVVLQTLSKAFGMAAIR-VGMAYAHADVVQLMNNVKAPYNVNRLSEEVARTALSNLSLYRQRVAQLLEQRDKLMETLRNEPYVRRVLPSDANFFLVEIEHAHTIYLHMAENGVVVRFRGNELHCTDCLRITVGTAEENAKLLELLRATVKGV 405          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A6V1XHV7_HETAK (Imidazole acetol-phosphate transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XHV7_HETAK)

HSP 1 Score: 253 bits (645), Expect = 9.290e-80
Identity = 127/224 (56.70%), Postives = 167/224 (74.55%), Query Frame = 1
Query:    4 KVIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEE--SACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQTVAAIAAS 669
            +++   T+ TK+LFLCSPGNPT K++P  VVR+IF GG+ G++VVDEAYVDF  +E  SAC  +DE  R+VVLQTLSKAFG+A IR +GMA  + ++I+ MNN K PYN+N+L++EVA+KAL D S+    VAT++ ER ++   L     V +V  SDANF L Q+D+AQ +YK MA+NG VVRFRGNELHC DC+R TVGTAEEN ++LE+LE T A  A +
Sbjct:  162 EILAGVTADTKLLFLCSPGNPTAKAIPIEVVREIFEGGYRGLVVVDEAYVDFVPKEVGSACQYLDEFPRLVVLQTLSKAFGLAGIR-LGMAIGHPEVIRLMNNCKYPYNINKLTEEVALKALGDTSILEANVATLISERARVMAALEAMPAVHKVHPSDANFVLFQIDHAQAIYKDMAENGCVVRFRGNELHCTDCIRATVGTAEENDKMLEMLEATHAKFATA 384          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A7S0XC30_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XC30_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.300e-72
Identity = 117/211 (55.45%), Postives = 155/211 (73.46%), Query Frame = 1
Query:    7 VIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELL 639
            ++ A   +TKI++LCSPGNPT K +P ++V D+ +   +G++VVDEAY+DFSG  SAC+LID+   ++VLQTLSKAFG+A IR +GMAY NE IIQ MNNVKAPYNVN+L+ +VA+ AL+D + Y + +  IL+ER  L   LR   F+ ++  +DANF L  V  A ++YK MAD GVV RFRG+ELHC DCLR+TVG  EEN + L LL
Sbjct:  133 LLSAIDINTKIVWLCSPGNPTSKVIPNAIVEDLLSQFTNGVVVVDEAYIDFSGTTSACTLIDKYPNLIVLQTLSKAFGLAGIR-LGMAYGNESIIQIMNNVKAPYNVNKLTADVALSALNDLATYHQNLVKILKEREYLLSQLRSLPFITKIHHTDANFILFAVPRAYDIYKTMADRGVVCRFRGSELHCTDCLRVTVGIREENDKFLHLL 342          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: B8BPZ8_THAPS (Imidazole acetol-phosphate transaminase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPZ8_THAPS)

HSP 1 Score: 230 bits (586), Expect = 6.530e-71
Identity = 121/222 (54.50%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    4 KVIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNG-GFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQV-DNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQTVAAIA 663
            +++ A T  TK+LFLCSPGNPT KS+P S VR+I +   ++G+++VDEAYVDFS  ESA SL+ E D +VVLQTLSKAFG+A IR  G A    D+IQ MNNVKAPYNVN+L+ + A  AL +  +  + V  +LE+R ++   L   +FV +V  SDANF L +V   A EVYK MAD GVV RFRGNELHC +C+R+T+GT +ENK+ LE+LE     IA
Sbjct:  164 EILEAVTPKTKLLFLCSPGNPTAKSIPLSDVREIASSPAYNGLVIVDEAYVDFSTTESATSLVTEFDNIVVLQTLSKAFGLAGIR-CGFAIGPSDVIQLMNNVKAPYNVNKLTSDAAANALKNTHVLEKNVNEVLEQREEVARKLEGLAFVEKVYPSDANFLLFRVRQKANEVYKMMADKGVVSRFRGNELHCNECIRVTIGTPDENKQFLEMLETVYDEIA 384          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A7S2CI78_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CI78_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.160e-66
Identity = 110/208 (52.88%), Postives = 149/208 (71.63%), Query Frame = 1
Query:   28 STKILFLCSPGNPTGKSVPASVVRDIFNGG-FDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQT 648
            STK++FLCSPGNPT KS+P + V  + N   +DG++VVDEAYVDFS   SAC L+D+  +++VLQTLSKAFG+A IR +GMA + E  IQY NNVKAPY+VN+L+ E+AV A ++  L    + TIL+ERT++   L    +V +V  SD NF L  +  A+E+YK MA+ GVV R+RG E+HC  C+R+T+GTA EN   L LL++T
Sbjct:  138 STKLMFLCSPGNPTAKSIPLATVEAVLNDPRYDGMVVVDEAYVDFSTVPSACCLVDKYPKLIVLQTLSKAFGLAGIR-LGMAISQESTIQYFNNVKAPYSVNKLTAEMAVDAFNNLPLLEANIKTILDERTRVAAALEGLPYVSKVHHSDTNFLLFVIPKAKELYKTMAEAGVVTRYRGTEMHCDGCIRVTIGTASENDAFLALLQKT 344          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A1V9ZWB1_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWB1_9STRA)

HSP 1 Score: 218 bits (556), Expect = 3.890e-66
Identity = 107/212 (50.47%), Postives = 157/212 (74.06%), Query Frame = 1
Query:    7 VIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLE 642
            +++A TS TKI+FLCSPGNPT  S+    +  +    + G +VVDEAY+DF+ ++S C+L+ +  R+VV QTLSK FG+A IR +G+AY + +IIQ +NNVKAPYN+N+L+ +VA +A  + SL +E+V  +L+E+ K+ + L+ F FV++V  SD+NF L Q  NA +VYK MA++GVV+R+RGN+L   DCLR T+GT EEN+++LEL E
Sbjct:  189 ILKAVTSQTKIIFLCSPGNPTANSLRLEDIIAVLESSYKGFVVVDEAYIDFAAQKSLCTLVKQYRRLVVAQTLSKGFGLAGIR-LGIAYGDPEIIQILNNVKAPYNINKLTAKVAKEAFENTSLLQEKVKIVLDEKKKVIKALQAFPFVQKVYASDSNFVLFQCSNAFKVYKEMAESGVVIRYRGNQLLLDDCLRATIGTPEENQKMLELFE 399          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A7S3Q8B5_9STRA (Imidazole acetol-phosphate transaminase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8B5_9STRA)

HSP 1 Score: 212 bits (539), Expect = 7.470e-64
Identity = 107/208 (51.44%), Postives = 152/208 (73.08%), Query Frame = 1
Query:    1 TKVIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDN-AQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENK 621
            T+++ A T   K++F+CSPGNPT K++P   V+ +    + G+IVVDEAYVDFS EESA  LI+    ++VLQTLSKAFG+A IR  G A   +DIIQ MNNVKAPYNVN+L+ EVA+ A+ + S   + +  +L++R  + + L+   FV +V  SD+NF LV++   +++VYK MADNG+VVR+RG+E+HCK+CLRIT+GT +EN+
Sbjct:  179 TEMLDAVTDKVKLMFICSPGNPTCKAIPIDDVKRLAESPYKGLIVVDEAYVDFSTEESAIKLIETYPNILVLQTLSKAFGLAGIR-CGFAIGYDDIIQLMNNVKAPYNVNKLTSEVAINAMKNISTLEKNIKVLLDQREVVAKELKEMDFVVKVYPSDSNFLLVRLKKLSKDVYKHMADNGIVVRYRGSEMHCKECLRITIGTEKENR 385          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A7S1XUU1_9STRA (Imidazole acetol-phosphate transaminase n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUU1_9STRA)

HSP 1 Score: 211 bits (536), Expect = 5.630e-63
Identity = 110/220 (50.00%), Postives = 149/220 (67.73%), Query Frame = 1
Query:    7 VIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDN-AQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQTVAAIA 663
            ++ AA  +TKI+F+ SPGNPT +++  + V ++ N  FDGII +DEAYVDFS E SAC L+D+   +++ QT+SKAFG+A IR +GMAYA+E IIQ  NNVK PY++N+L++E+A+    D S     +  I  ER ++   L  F FV  V  SD NF L +V   A+EVYKRMA++G VVR+RG ELHC DC+R TVGT  EN   L +L Q  A +A
Sbjct:  202 MVAAADDTTKIMFVTSPGNPTARAISHAQVEELCNSSFDGIIALDEAYVDFSEEGSACHLLDKYPNLIIFQTMSKAFGLAGIR-MGMAYASEAIIQIFNNVKLPYSINKLTEEIALDVFDDLSKLYSNIEKIKTERARVMAQLAAFDFVALVHPSDTNFVLFKVPKYAKEVYKRMAESGCVVRYRGTELHCTDCIRATVGTPAENDTFLRMLPQIYAEVA 420          
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Match: A0A7R9UEV3_9STRA (Imidazole acetol-phosphate transaminase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEV3_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.120e-62
Identity = 106/223 (47.53%), Postives = 152/223 (68.16%), Query Frame = 1
Query:    7 VIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAYVDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYMNNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSFVREVKESDANFFLVQVDN-AQEVYKRMADNGVVVRFRGNELHCKDCLRITVGTAEENKRLLELLEQTVAAIAASE 672
            ++ AA  +TK++F+CSPGNPT KS+  + V ++ N  FDGII +DEAYVDFS + SA   +D    ++V+QT+SKAFG+AAIR +GMA+A+E+I+Q  NNVKAPY++N+L++E+A +   D +   + +  I  ER ++   L  + FV  V  SD NF L QV   A+EVYK MA+ G VVR+RG++LHC DC+R ++GT E+N   L LL +  A I   E
Sbjct:  175 MLAAADETTKVMFVCSPGNPTAKSITHAQVEELCNSSFDGIIALDEAYVDFSADGSALKFLDRYPNLLVMQTMSKAFGLAAIR-LGMAFAHEEIVQIFNNVKAPYSINKLTEEIAYRVFDDLTPLYDNIKKIKRERQRVMAALNGYEFVTLVHPSDTNFVLFQVPKVAKEVYKTMAERGCVVRYRGDQLHCDDCIRASIGTPEQNDLFLSLLPKVYAEIVQEE 396          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9468.17499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK66_9PHAE2.000e-12283.26Imidazole acetol-phosphate transaminase n=2 Tax=Ec... [more]
A0A836C9P4_9STRA1.940e-9066.96Imidazole acetol-phosphate transaminase n=1 Tax=Tr... [more]
A0A6V1XHV7_HETAK9.290e-8056.70Imidazole acetol-phosphate transaminase n=1 Tax=He... [more]
A0A7S0XC30_9STRA1.300e-7255.45Imidazole acetol-phosphate transaminase n=1 Tax=Ch... [more]
B8BPZ8_THAPS6.530e-7154.50Imidazole acetol-phosphate transaminase n=1 Tax=Th... [more]
A0A7S2CI78_9STRA1.160e-6652.88Imidazole acetol-phosphate transaminase n=1 Tax=Fl... [more]
A0A1V9ZWB1_9STRA3.890e-6650.47Imidazole acetol-phosphate transaminase n=1 Tax=Th... [more]
A0A7S3Q8B5_9STRA7.470e-6451.44Imidazole acetol-phosphate transaminase (Fragment)... [more]
A0A7S1XUU1_9STRA5.630e-6350.00Imidazole acetol-phosphate transaminase n=3 Tax=Ph... [more]
A0A7R9UEV3_9STRA1.120e-6247.53Imidazole acetol-phosphate transaminase n=1 Tax=Pi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9468contigS-dermatodea_contig9468:57..2110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.5
Seed ortholog evalue1.7e-98
Seed eggNOG ortholog2880.D7FPJ8
Preferred nameHIS5
KEGG rclassRC00006,RC00888,RC00945
KEGG koko:K00817,ko:K01814
KEGG ReactionR00694,R00734,R03243,R04640
KEGG Pathwayko00340,ko00350,ko00360,ko00400,ko00401,ko00960,ko01100,ko01110,ko01130,ko01230,map00340,map00350,map00360,map00400,map00401,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004400,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010045,GO:0016053,GO:0016740,GO:0016769,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0050896,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.histidinol-phosphate transaminase activity
EggNOG OGsCOG0079@1,KOG0633@2759
EC2.6.1.9,5.3.1.16
COG Functional cat.E
BiGG ReactioniMM904.YIL116W,iND750.YIL116W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons4
Model size675
Cds size675
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9468.17499.1prot_S-dermatodea_contig9468.17499.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9468 57..2110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925410.0737092-CDS-S-dermatodea_contig9468:56..3101622925410.0737092-CDS-S-dermatodea_contig9468:56..310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 57..310 +
1694079914.680987-CDS-S-dermatodea_contig9468:56..3101694079914.680987-CDS-S-dermatodea_contig9468:56..310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 57..310 +
1622925410.0854838-CDS-S-dermatodea_contig9468:652..8061622925410.0854838-CDS-S-dermatodea_contig9468:652..806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 653..806 +
1694079914.6976638-CDS-S-dermatodea_contig9468:652..8061694079914.6976638-CDS-S-dermatodea_contig9468:652..806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 653..806 +
1622925410.101304-CDS-S-dermatodea_contig9468:1307..13941622925410.101304-CDS-S-dermatodea_contig9468:1307..1394Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 1308..1394 +
1694079914.7160616-CDS-S-dermatodea_contig9468:1307..13941694079914.7160616-CDS-S-dermatodea_contig9468:1307..1394Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 1308..1394 +
1622925410.1142604-CDS-S-dermatodea_contig9468:1930..21101622925410.1142604-CDS-S-dermatodea_contig9468:1930..2110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 1931..2110 +
1694079914.7272215-CDS-S-dermatodea_contig9468:1930..21101694079914.7272215-CDS-S-dermatodea_contig9468:1930..2110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9468 1931..2110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9468.17499.1

>prot_S-dermatodea_contig9468.17499.1 ID=prot_S-dermatodea_contig9468.17499.1|Name=mRNA_S-dermatodea_contig9468.17499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=225bp
TKVIRAATSSTKILFLCSPGNPTGKSVPASVVRDIFNGGFDGIIVVDEAY
VDFSGEESACSLIDELDRVVVLQTLSKAFGMAAIRRVGMAYANEDIIQYM
NNVKAPYNVNRLSQEVAVKALSDRSLYRERVATILEERTKLQETLRRFSF
VREVKESDANFFLVQVDNAQEVYKRMADNGVVVRFRGNELHCKDCLRITV
GTAEENKRLLELLEQTVAAIAASE*
back to top

mRNA from alignment at S-dermatodea_contig9468:57..2110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9468.17499.1 ID=mRNA_S-dermatodea_contig9468.17499.1|Name=mRNA_S-dermatodea_contig9468.17499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2054bp|location=Sequence derived from alignment at S-dermatodea_contig9468:57..2110+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCAAGGTTATCCGAGCTGCAACCTCTTCCACGAAAATCCTTTTCCTGTG CTCCCCGGGTAACCCCACCGGCAAGAGCGTGCCCGCATCCGTCGTGCGAG ATATTTTCAACGGCGGTTTCGACGGCATCATCGTAGTAGACGAGGCGTAC GTTGACTTCTCGGGTGAAGAAAGCGCGTGCTCTCTGATTGACGAGCTGGA CCGTGTCGTGGTGCTGCAGACGCTGTCCAAGGCGTTCGGGATGGCGGCCA TTCGGTGAGGGTACCGGTACCGGCGTGGCTCGGTGCGTTGCGTCGTAACA TGTTTTTGTCGTTTCTTGCGGAGATGTTGCGGAAGCGTGGGCGGCGGCTC TGCTGTGTCTGTACTTCAGCCGCAAAGCCACAGGCTCGATCTTAGTGGTT CTTGTGCTGTCATAAGCAATGGGTTCGCCTCGTCTTCGATGCGAGACGTT CTGCAAATCCTTCCAGGCCGTGTACATCGTGGATATTTGCGACATCTCTT GCGAAACATACGACCAGGCCACTCATTTAGTCCCCCCATCTTATCGTTGG TATGCCGCCTCGGTTTCCCTGTCCCCACCCCCGTCCTTGTCGCGAGCAGA GTGGGCATGGCCTACGCGAACGAAGACATCATACAGTACATGAACAACGT GAAGGCTCCTTACAACGTCAACCGCCTGTCCCAGGAGGTTGCTGTCAAAG CCCTCAGCGATCGAAGCCTTTACCGAGAACGGGTGGCCACTATCCTTGAG GTGAGACGACGCTCATGTGTGTACGAGCGGGGCACATGGAGCACGCTTTG TGACGATGAGTAAGGCAGCGACCCGTGAGGGTTTCGGAAAGTCTCGTCAG AGCACGAAATATAATCTCCCTTTTCAGATAGAGATCTTGGCCGTAAAGCC GTGCTGTATCGCGTCGATCTGGTTGCTAGGGAGGATAGACTCAACTTGGA ACAGCGGGGAGCCTAGAGTGTCTTGTGGCAAGTAACTATTGTGGCATCTA GTTACTCCGCATGTGACTGCGGGGTGGGGCTCGATCGACTCGGTACGCTG GCAGTCGCCCCGTCGCCGTGAGTCCACTGGCGGCGAGCTTCGTCCGTAAT GTGTGCGAACGTCTCGCACCCTCACGGTCCGCGGCGGAGATTGCCTGGAA CCGTGGGTCCATCTCGCTTGGGCCCTACAAGTATGCACTCTGGGTCGAAA TCGGTGCCTGAAACACTTCCACGCGCCGTGCTTCCTTTTACTACGGTGCA GGAGCGAACAAAGTTGCAGGAAACATTGCGGCGCTTCAGCTTCGTTCGAG AGGTGAAGGAGTCGGACGCCAACTTCTTCCTCGTACAGGTATGCCGGCGC ATATTTGCAGCTGCTTTGCTTGACTCCGCTGTCGGAGTTTGTCGCGTGCC GCATTAAGTTCGGAACGCAACCTGTGAATTCTTCGCCATGTGTGACACTT TGTATTGGGAGACCATGTCTCGTTTTTTTGCGTGGTGTTGCGAGCGATCA ACGATTTGTACCTTTTTCGGATGATTCGCGTAACCGATCCAGCTCGATCT TGAGCGAAGCGTCCGAGCCGAGCGGTCCCTCTTTGATGCGTTCCGTCGGT TCGTTATCGCCGACCCCTTACGCAGGTAGAAACTACATCGCAGCCTTACC TGTTTTATCGCACGCTCACATTGATCTATATTCCTTTGTGGCGAAGCTAG GGCCTGCATTTGCCGAATATAGTACTTACTTCTTCTGCAAGCATTGTTCG CACGGAAGACGGCGTGAAACGTTTTTGTCTAGTCGCCTGGGCTGTCGTTT ATCATCGCTCCGACACGAATTAGCGCGCCCGTCCGTTTCCAAACGTACCA CGCTGCATCAACTGCACCAACAAGGTTGACAATGCGCAGGAGGTCTACAA GCGCATGGCGGACAACGGGGTCGTGGTGCGGTTCAGGGGCAACGAGCTGC ACTGCAAGGATTGCCTCCGGATAACAGTCGGGACCGCGGAGGAGAACAAA CGCCTCCTAGAACTCCTCGAGCAGACCGTGGCGGCCATTGCGGCATCGGA ATAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9468:57..2110+

>mRNA_S-dermatodea_contig9468.17499.1 ID=mRNA_S-dermatodea_contig9468.17499.1|Name=mRNA_S-dermatodea_contig9468.17499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at S-dermatodea_contig9468:57..2110+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCAAGGTTATCCGAGCTGCAACCTCTTCCACGAAAATCCTTTTCCTGTG
CTCCCCGGGTAACCCCACCGGCAAGAGCGTGCCCGCATCCGTCGTGCGAG
ATATTTTCAACGGCGGTTTCGACGGCATCATCGTAGTAGACGAGGCGTAC
GTTGACTTCTCGGGTGAAGAAAGCGCGTGCTCTCTGATTGACGAGCTGGA
CCGTGTCGTGGTGCTGCAGACGCTGTCCAAGGCGTTCGGGATGGCGGCCA
TTCGACCAAGGTTATCCGAGCTGCAACCTCTTCCACGAAAATCCTTTTCC
TGTGCTCCCCGGGTAACCCCACCGGCAAGAGCGTGCCCGCATCCGTCGTG
CGAGATATTTTCAACGGCGGTTTCGACGGCATCATCGTAGTAGACGAGGC
GTACGTTGACTTCTCGGGTGAAGAAAGCGCGTGCTCTCTGATTGACGAGC
TGGACCGTGTCGTGGTGCTGCAGACGCTGTCCAAGGCGTTCGGGATGGCG
GCCATTCGCAGAGTGGGCATGGCCTACGCGAACGAAGACATCATACAGTA
CATGAACAACGTGAAGGCTCCTTACAACGTCAACCGCCTGTCCCAGGAGG
TTGCTGTCAAAGCCCTCAGCGATCGAAGCCTTTACCGAGAACGGGTGGCC
ACTATCCTTGAGCAGAGTGGGCATGGCCTACGCGAACGAAGACATCATAC
AGTACATGAACAACGTGAAGGCTCCTTACAACGTCAACCGCCTGTCCCAG
GAGGTTGCTGTCAAAGCCCTCAGCGATCGAAGCCTTTACCGAGAACGGGT
GGCCACTATCCTTGAGGAGCGAACAAAGTTGCAGGAAACATTGCGGCGCT
TCAGCTTCGTTCGAGAGGTGAAGGAGTCGGACGCCAACTTCTTCCTCGTA
CAGGAGCGAACAAAGTTGCAGGAAACATTGCGGCGCTTCAGCTTCGTTCG
AGAGGTGAAGGAGTCGGACGCCAACTTCTTCCTCGTACAGGTTGACAATG
CGCAGGAGGTCTACAAGCGCATGGCGGACAACGGGGTCGTGGTGCGGTTC
AGGGGCAACGAGCTGCACTGCAAGGATTGCCTCCGGATAACAGTCGGGAC
CGCGGAGGAGAACAAACGCCTCCTAGAACTCCTCGAGCAGACCGTGGCGG
CCATTGCGGCATCGGAATAGGTTGACAATGCGCAGGAGGTCTACAAGCGC
ATGGCGGACAACGGGGTCGTGGTGCGGTTCAGGGGCAACGAGCTGCACTG
CAAGGATTGCCTCCGGATAACAGTCGGGACCGCGGAGGAGAACAAACGCC
TCCTAGAACTCCTCGAGCAGACCGTGGCGGCCATTGCGGCATCGGAATAG
back to top