mRNA_S-dermatodea_contig94482.17476.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig94482.17476.1
Unique NamemRNA_S-dermatodea_contig94482.17476.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig94482.17476.1 vs. uniprot
Match: A0A6H5KMD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 8.700e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   64 AGLLYTGVKYGLVPRDPMLLFVLLMESAMPSAQNSVIMLQV 186
            +GLL+ GVKYGLVP DPMLLFVLL+ES MPSAQN+VIMLQV
Sbjct:  445 SGLLFGGVKYGLVPPDPMLLFVLLIESCMPSAQNTVIMLQV 485
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BLAST of mRNA_S-dermatodea_contig94482.17476.1 vs. uniprot
Match: A0A7S2V2A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2A0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.540e-6
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   64 AGLLYTGVKYGLVPRDPMLLFVLLMESAMPSAQNSVIMLQV 186
            AGLL  G+  GL   DP+LLFVL+M+S MPSAQN+V++LQV
Sbjct:   71 AGLLRLGINLGLSLHDPVLLFVLMMQSCMPSAQNNVLILQV 111
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BLAST of mRNA_S-dermatodea_contig94482.17476.1 vs. uniprot
Match: A0A836CLT3_9STRA (Auxin efflux carrier n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.320e-5
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   46 ALARGCAGLLYTGVKYGLVPRDPMLLFVLLMESAMPSAQNSVIMLQV 186
            AL  GC       VK  +VPRDP LLFVL+ME+AMP AQNSVI+LQV
Sbjct:  310 ALLLGC-------VKARIVPRDPALLFVLMMEAAMPPAQNSVIILQV 349
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BLAST of mRNA_S-dermatodea_contig94482.17476.1 vs. uniprot
Match: A0A7S3XRE8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRE8_HETAK)

HSP 1 Score: 48.1 bits (113), Expect = 2.940e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   67 GLLYTGVKYGLVPRDPMLLFVLLMESAMPSAQNSVIMLQV 186
            GL+      G +P DP+LLFVLL+ES MPSAQNSV++LQV
Sbjct:   47 GLIQAFKAVGFMPADPVLLFVLLLESCMPSAQNSVVILQV 86
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BLAST of mRNA_S-dermatodea_contig94482.17476.1 vs. uniprot
Match: A0A6H5JAG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG8_9PHAE)

HSP 1 Score: 46.2 bits (108), Expect = 8.550e-5
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   64 AGLLYTGVKYGLVPRDPMLLFVLLMESAMPSAQNSVIMLQ 183
            A LL++G K  L+P D ++ FVLLME  MPSAQNSV++LQ
Sbjct:   13 AMLLFSGAKAKLIPYDKLVWFVLLMEGCMPSAQNSVVILQ 52
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig94482.17476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KMD6_9PHAE8.700e-1182.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V2A0_9STRA7.540e-663.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CLT3_9STRA2.320e-563.83Auxin efflux carrier n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3XRE8_HETAK2.940e-562.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JAG8_9PHAE8.550e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig94482contigS-dermatodea_contig94482:173..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue4e-09
Seed eggNOG ortholog2880.D7G8U0
KEGG koko:K07088
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925408.40814-CDS-S-dermatodea_contig94482:172..3821622925408.40814-CDS-S-dermatodea_contig94482:172..382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94482 173..382 -
1694079913.5511734-CDS-S-dermatodea_contig94482:172..3821694079913.5511734-CDS-S-dermatodea_contig94482:172..382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig94482 173..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig94482.17476.1prot_S-dermatodea_contig94482.17476.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig94482 173..382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig94482.17476.1

>prot_S-dermatodea_contig94482.17476.1 ID=prot_S-dermatodea_contig94482.17476.1|Name=mRNA_S-dermatodea_contig94482.17476.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
TPVLSSPTARVCCLTALARGCAGLLYTGVKYGLVPRDPMLLFVLLMESAM
PSAQNSVIMLQVRLRLVIIA
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mRNA from alignment at S-dermatodea_contig94482:173..382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig94482.17476.1 ID=mRNA_S-dermatodea_contig94482.17476.1|Name=mRNA_S-dermatodea_contig94482.17476.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig94482:173..382- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTCCCGTTCTCTCATCGCCCACCGCGCGCGTTTGTTGCCTGACCGCACT
GGCCCGTGGCTGTGCAGGCCTGTTGTATACCGGAGTTAAGTATGGCCTTG
TCCCACGGGACCCGATGCTGCTGTTTGTGCTGCTGATGGAGTCAGCCATG
CCTTCTGCACAGAACTCGGTCATCATGTTGCAGGTAAGGCTAAGGCTTGT
GATCATTGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig94482:173..382-

>mRNA_S-dermatodea_contig94482.17476.1 ID=mRNA_S-dermatodea_contig94482.17476.1|Name=mRNA_S-dermatodea_contig94482.17476.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig94482:173..382- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTCCCGTTCTCTCATCGCCCACCGCGCGCGTTTGTTGCCTGACCGCACT
GGCCCGTGGCTGTGCAGGCCTGTTGTATACCGGAGTTAAGTATGGCCTTG
TCCCACGGGACCCGATGCTGCTGTTTGTGCTGCTGATGGAGTCAGCCATG
CCTTCTGCACAGAACTCGGTCATCATGTTGCAGGTAAGGCTAAGGCTTGT
GATCATTGCTACTCCCGTTCTCTCATCGCCCACCGCGCGCGTTTGTTGCC
TGACCGCACTGGCCCGTGGCTGTGCAGGCCTGTTGTATACCGGAGTTAAG
TATGGCCTTGTCCCACGGGACCCGATGCTGCTGTTTGTGCTGCTGATGGA
GTCAGCCATGCCTTCTGCACAGAACTCGGTCATCATGTTGCAGGTAAGGC
TAAGGCTTGTGATCATTGCT
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