mRNA_S-dermatodea_contig9412.17446.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9412.17446.1
Unique NamemRNA_S-dermatodea_contig9412.17446.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: D8LL78_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL78_ECTSI)

HSP 1 Score: 503 bits (1296), Expect = 1.360e-171
Identity = 250/286 (87.41%), Postives = 271/286 (94.76%), Query Frame = 1
Query:    1 QGLERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYPGGTQGIE 858
            +GLERQA+LFRPKLIIAGASAYSREWDYARMRKIADEVGAYL+TDMAHISGLVA GEA+DPFPHSHVVTSTTHKSLRGPRSG+IFSRR+ G+NDLVDFAVFPALQGGPHNHQIAALAAALKEAASP+FK YI++VK NA+ALAAGLRARGHEVAT GTDNHLLLWDLRP+GLTGSKMEKLLE CSISANKNTLYGDKSAA+PGGVRLGTPAMTTRGLDE DF ETVAGFLDRAA LACA QERAG+KKL+AFV EM+ADEGV+ELK +VEAFA RF+YPGG +G +
Sbjct:  252 EGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSRRNEGINDLVDFAVFPALQGGPHNHQIAALAAALKEAASPDFKSYIKKVKTNAKALAAGLRARGHEVATDGTDNHLLLWDLRPRGLTGSKMEKLLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFRETVAGFLDRAACLACAVQERAGSKKLTAFVTEMDADEGVRELKGEVEAFAERFYYPGGAEGAQ 537          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: A0A836CDU7_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU7_9STRA)

HSP 1 Score: 347 bits (889), Expect = 1.410e-110
Identity = 179/281 (63.70%), Postives = 220/281 (78.29%), Query Frame = 1
Query:    7 LERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADE---GVKELKCDVEAFACRFFYPG 840
            + R+AKLFRPKL+IAGASAYSR+WDYARMR+IAD+VGA L+ DMAHISGLVATGEA+ PF H HVVT+TTHK+LRGPRSG+IF R+   L   +DFAVFP+LQGGPHNHQIAALA ALKEA +P+FK YIQ+VKAN++ALA  L+  G+ + TGGTDNHL+LWDLRP+ ++GSK E LLE  SI+ NKNT++GDKSA  PGGVRLGTPAMTTRG+ EADF   +A  L R   +A  AQ  +G+ KL  F A M   E    ++ L+ +VE ++  F+YPG
Sbjct:  237 MARRAKLFRPKLLIAGASAYSRDWDYARMRQIADDVGALLMADMAHISGLVATGEANRPFEHCHVVTTTTHKTLRGPRSGMIFMRKE--LQAAIDFAVFPSLQGGPHNHQIAALAVALKEAQTPDFKRYIQQVKANSKALATALQDLGYTIVTGGTDNHLVLWDLRPQKISGSKAEALLEAVSITVNKNTIHGDKSAVTPGGVRLGTPAMTTRGMSEADFGR-IAELLHRGVAIALEAQAASGSVKLVDFRAAMALPEIAPQIEALRLEVEEWSRGFYYPG 514          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: R1DZ60_EMIHU (Serine hydroxymethyltransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ60_EMIHU)

HSP 1 Score: 342 bits (877), Expect = 3.170e-109
Identity = 185/280 (66.07%), Postives = 215/280 (76.79%), Query Frame = 1
Query:    4 GLERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAH--ISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYP 837
            GLE +A+LFRPKL+IAGASAY R+WDYARMR+IAD VGA L+ DMAH  ISGLVA  +A+DPF H  VVTSTTHKSLRGPR+GVIF R+       V+FAVFP LQGGPHNHQIAALA AL+EA  P F+ YI+RVKANA+ALAA L ARG+ + TGGTDNHL+LWDLRP+ LTGSK+EKL E   I+ NKN + GD SAA PGGVR+GTPA+TTRG  EADF   VA +L  A  LA A Q+R+GTK L  FVAEMEA+  V +L+  V AFA  F  P
Sbjct:  206 GLEERARLFRPKLLIAGASAYPRDWDYARMRRIADSVGALLMNDMAHAHISGLVAAEQAADPFEHCDVVTSTTHKSLRGPRAGVIFYRKR--FESAVNFAVFPCLQGGPHNHQIAALAVALREAQQPAFREYIRRVKANAKALAAALVARGYTIVTGGTDNHLVLWDLRPQRLTGSKLEKLAEAVGITLNKNAVRGDVSAATPGGVRIGTPALTTRGFGEADFVR-VAEYLHEAVELALALQQRSGTK-LKDFVAEMEAEPAVADLRERVRAFATEFPMP 481          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: A0A7S0Q4N9_9EUKA (Serine hydroxymethyltransferase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4N9_9EUKA)

HSP 1 Score: 333 bits (853), Expect = 1.980e-107
Identity = 176/277 (63.54%), Postives = 209/277 (75.45%), Query Frame = 1
Query:    7 LERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYP 837
            LE +AKLFRPKL+IAGASAY R+WDYARMR+IAD VGAYLL DMAHISGL A    +DPF H  +VTSTTHKSLRGPR+G+IF R+       V+FAVFP LQGGPHNHQIAALA AL+EA++PEFK YI  VKANARALAA L A+G+ + TGGTDNHL+LWDLRP  LTGSK EK+ +   I+ NKN ++GD SAA PGGVR+GTPAM+TRGL+EADFE+ VA FL  A  L+   Q R+G +KL  FV  +  +  V  L+  V  F+ RF  P
Sbjct:   78 LEARAKLFRPKLLIAGASAYPRDWDYARMRQIADSVGAYLLNDMAHISGLAAASACNDPFEHCDIVTSTTHKSLRGPRAGMIFYRKR--FEAAVNFAVFPCLQGGPHNHQIAALAVALREASTPEFKKYITAVKANARALAASLSAKGYRLVTGGTDNHLVLWDLRPLSLTGSKFEKMCDAVGITLNKNAVHGDTSAAVPGGVRIGTPAMSTRGLNEADFEQ-VAEFLHEAVDLSLRVQARSG-RKLRDFVELLATEPEVASLRQRVREFSLRFGMP 350          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: D2VIC8_NAEGR (Serine hydroxymethyltransferase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VIC8_NAEGR)

HSP 1 Score: 335 bits (859), Expect = 7.590e-107
Identity = 170/279 (60.93%), Postives = 218/279 (78.14%), Query Frame = 1
Query:    4 GLERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYPG 840
            GLE+ A++FRPKLII G SAY R+WDYAR+RKIADE+ AYL+ DMAH SGLVATGE + PF +  VVTSTTHKSLRGPR+G+IF++++  L   +DFAVFP +QGGPHNHQIAA+A  LKE  +PEFK YIQ+VKANA+ LA  L  +G+ +ATGGTDNHL+LW+LRP+G+TGSKMEKL +  SI++NKN++ GD +A +P GVRLGTPA+TTRG  E DFE+ VA FL R   +    QE+A + KL+ F+A  E +E + +LK +VE+FA +F  PG
Sbjct:  173 GLEKSARVFRPKLIICGGSAYPRDWDYARLRKIADEIEAYLMCDMAHYSGLVATGEHNSPFQYCDVVTSTTHKSLRGPRAGIIFAKKA--LMPKIDFAVFPGIQGGPHNHQIAAIATQLKEVKTPEFKQYIQQVKANAKTLAKALIEKGYTLATGGTDNHLVLWNLRPQGITGSKMEKLFDAVSITSNKNSIAGDANALSPFGVRLGTPALTTRGFKEVDFEK-VAEFLHRGVQIGLKLQEQAVSTKLADFLALFENNEELTQLKSEVESFAKQFGIPG 448          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: A0A7S0J5B3_9EUKA (Serine hydroxymethyltransferase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5B3_9EUKA)

HSP 1 Score: 335 bits (859), Expect = 3.660e-106
Identity = 179/277 (64.62%), Postives = 213/277 (76.90%), Query Frame = 1
Query:    7 LERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYP 837
            L+ +AKLFRP+L+IAGASAY R+WDY RMR+IAD VGAYLL DMAHISGL A    +DPF HS +VTSTTHKSLRGPR+G+IF R+       V+FAVFP LQGGPHN+QIAALA AL+EAA+PEFK YI  VKANA+ALAA L ARG+ + TGGTDNHL+LWDLRP  LTGSK EKL +   I+ NKN ++GD SAA+PGGVRLGTPAM+TRGLDEADFE+ VA FL  A  L+ + Q R+G +KL  FVAE+ +   V  L+  V  F+ RF  P
Sbjct:  237 LQERAKLFRPRLLIAGASAYPRDWDYERMRQIADSVGAYLLNDMAHISGLAAAAACNDPFKHSDIVTSTTHKSLRGPRAGMIFYRKR--HEAAVNFAVFPCLQGGPHNNQIAALAVALREAATPEFKQYIAAVKANAQALAAALSARGYRIVTGGTDNHLVLWDLRPLRLTGSKFEKLCDAVGITLNKNAVFGDASAASPGGVRLGTPAMSTRGLDEADFEQ-VAEFLHEAIELSLSVQGRSG-RKLCDFVAELASTPEVALLRQRVRDFSVRFGMP 509          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: A0A7S4F0S4_CHRCT (Glycine hydroxymethyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F0S4_CHRCT)

HSP 1 Score: 330 bits (845), Expect = 5.530e-106
Identity = 173/277 (62.45%), Postives = 208/277 (75.09%), Query Frame = 1
Query:    7 LERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYP 837
            LE +AKLFRPKL+IAGASAY R+WDYARMR+IAD VGAYLL DMAHISGL A G  +DPF HS VVTSTTHKSLRGPR+G+IF R+   L   +DFAVFP LQGGPHN+ IAALA AL EA +P+FK YI  VK+NA+ LA+ L  RG+ + TGGTDNHL+LWDLRP  +TGSK+EKL +   I+ NKN ++GD SAAAPGGVR+GTPAMTTRGL + DFE+ VA FL  A  LA   Q ++G K L  FVA ++ +  V +L   V  F+ +F  P
Sbjct:   95 LEARAKLFRPKLLIAGASAYPRDWDYARMREIADSVGAYLLNDMAHISGLAAAGACNDPFAHSDVVTSTTHKSLRGPRAGMIFYRKH--LQQQIDFAVFPCLQGGPHNNAIAALAVALAEAGTPQFKSYIDAVKSNAKTLASSLLDRGYSIVTGGTDNHLVLWDLRPLKITGSKVEKLCDAVGITLNKNAVHGDVSAAAPGGVRIGTPAMTTRGLTQTDFEQ-VAAFLHEAVQLALELQAKSGPK-LKDFVALLDGEPRVADLNTRVRQFSMQFDMP 367          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: A0A0M0JHA8_9EUKA (Serine hydroxymethyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHA8_9EUKA)

HSP 1 Score: 331 bits (848), Expect = 5.040e-105
Identity = 181/278 (65.11%), Postives = 209/278 (75.18%), Query Frame = 1
Query:    4 GLERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYP 837
            GLE +A+LFRPKLIIAGASAY R+WDY RMR+IADEVGAYLL DMAHISGL A  E  +PF H+ VVTSTTHKSLRGPR+GVIF R+       V+ AVFPALQGGPHNHQI ALA AL+EAA+PEF  YI+ VKANA+ALA  L + G+E+ TGGTDNHL+LWDLRP GLTGSK+EKL E   IS NKN + GD SA  PGGVR+GTPAMTTRGL+EADFE  VA  L  AA L+   Q  +G K L+ FV E+E    V+ L+  V  FA +F  P
Sbjct:  197 GLEARARLFRPKLIIAGASAYPRDWDYGRMRQIADEVGAYLLNDMAHISGLAAARECHNPFEHADVVTSTTHKSLRGPRAGVIFYRKK--FEAAVNGAVFPALQGGPHNHQIGALAVALREAAAPEFGDYIRSVKANAKALARKLVSHGYEIVTGGTDNHLVLWDLRPLGLTGSKLEKLCEAVHISLNKNAVRGDTSALTPGGVRVGTPAMTTRGLNEADFE-VVADHLHAAAQLSLQLQALSGPK-LADFVHEIEGSAEVRALRERVTEFASKFPMP 470          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: A0A7S4BH98_CHRCT (Serine hydroxymethyltransferase n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BH98_CHRCT)

HSP 1 Score: 330 bits (845), Expect = 3.190e-104
Identity = 173/277 (62.45%), Postives = 208/277 (75.09%), Query Frame = 1
Query:    7 LERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKGYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYP 837
            LE +AKLFRPKL+IAGASAY R+WDYARMR+IAD VGAYLL DMAHISGL A G  +DPF HS VVTSTTHKSLRGPR+G+IF R+   L   +DFAVFP LQGGPHN+ IAALA AL EA +P+FK YI  VK+NA+ LA+ L  RG+ + TGGTDNHL+LWDLRP  +TGSK+EKL +   I+ NKN ++GD SAAAPGGVR+GTPAMTTRGL + DFE+ VA FL  A  LA   Q ++G K L  FVA ++ +  V +L   V  F+ +F  P
Sbjct:  225 LEARAKLFRPKLLIAGASAYPRDWDYARMREIADSVGAYLLNDMAHISGLAAAGACNDPFAHSDVVTSTTHKSLRGPRAGMIFYRKH--LQQQIDFAVFPCLQGGPHNNAIAALAVALAEAGTPQFKSYIDAVKSNAKTLASSLLDRGYSIVTGGTDNHLVLWDLRPLKITGSKVEKLCDAVGITLNKNAVHGDVSAAAPGGVRIGTPAMTTRGLTQTDFEQ-VAAFLHEAVQLALELQAKSGPK-LKDFVALLDGEPRVADLNTRVRQFSMQFDMP 497          
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Match: W7U0E7_9STRA (Serine hydroxymethyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0E7_9STRA)

HSP 1 Score: 330 bits (845), Expect = 7.050e-104
Identity = 178/279 (63.80%), Postives = 211/279 (75.63%), Query Frame = 1
Query:    7 LERQAKLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPRSGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFK-GYIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKLLETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFLDRAAVLACAAQERAGTKKLSAFVAEMEADEG-VKELKCDVEAFACRFFYP 837
            L++ A LFRP+LI+AG SAY R+WDYAR+R IAD  GAYL+TDMAHISGLV+ G  ++PFP+S VVTSTTHKSLRGPRSG+IF R+   L + V FAVFP+LQGGPHNHQIAALA ALKEAA+P F+  YI RVK NA ALA  L+  GH V T GT+NHLLLWD+RP G+TGSK+EKLLE   IS NKNT++GDKSA++PGGVR+GTPAMTTRGL E DF   VA FLD    LA   Q  A +KKL  F   M+A E  V+ L+  V+ FA  F +P
Sbjct:  248 LQKLASLFRPRLIVAGGSAYPRDWDYARLRAIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFRKE--LAEQVHFAVFPSLQGGPHNHQIAALAVALKEAAAPSFRQDYIWRVKRNAEALAMELQRLGHSVVTNGTENHLLLWDMRPHGITGSKVEKLLEAVGISVNKNTIHGDKSASSPGGVRVGTPAMTTRGLTERDFLH-VAAFLDDGLRLALKVQAGADSKKLVDFERAMQAHEQEVRALRDRVQHFASNFSFP 523          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9412.17446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL78_ECTSI1.360e-17187.41Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A836CDU7_9STRA1.410e-11063.70Serine hydroxymethyltransferase n=1 Tax=Tribonema ... [more]
R1DZ60_EMIHU3.170e-10966.07Serine hydroxymethyltransferase n=2 Tax=Emiliania ... [more]
A0A7S0Q4N9_9EUKA1.980e-10763.54Serine hydroxymethyltransferase n=1 Tax=Coccolithu... [more]
D2VIC8_NAEGR7.590e-10760.93Serine hydroxymethyltransferase n=1 Tax=Naegleria ... [more]
A0A7S0J5B3_9EUKA3.660e-10664.62Serine hydroxymethyltransferase n=1 Tax=Calcidiscu... [more]
A0A7S4F0S4_CHRCT5.530e-10662.45Glycine hydroxymethyltransferase n=1 Tax=Chrysotil... [more]
A0A0M0JHA8_9EUKA5.040e-10565.11Serine hydroxymethyltransferase n=1 Tax=Chrysochro... [more]
A0A7S4BH98_CHRCT3.190e-10462.45Serine hydroxymethyltransferase n=3 Tax=Chrysotila... [more]
W7U0E7_9STRA7.050e-10463.80Serine hydroxymethyltransferase n=2 Tax=Monodopsid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9412contigS-dermatodea_contig9412:120..4663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score447.2
Seed ortholog evalue5.2e-123
Seed eggNOG ortholog2880.D8LL78
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
EggNOG free text desc.glycine hydroxymethyltransferase activity
EggNOG OGsCOG0112@1,KOG2467@2759
EC2.1.2.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons5
Model size1518
Cds size780
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.1733305-UTR-S-dermatodea_contig9412:119..2091622925406.1733305-UTR-S-dermatodea_contig9412:119..209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9412 120..209 +
1694079912.0411766-UTR-S-dermatodea_contig9412:119..2091694079912.0411766-UTR-S-dermatodea_contig9412:119..209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9412 120..209 +
1622925406.255036-UTR-S-dermatodea_contig9412:4015..46631622925406.255036-UTR-S-dermatodea_contig9412:4015..4663Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9412 4016..4663 +
1694079912.1236942-UTR-S-dermatodea_contig9412:4015..46631694079912.1236942-UTR-S-dermatodea_contig9412:4015..4663Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9412 4016..4663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925406.1946034-CDS-S-dermatodea_contig9412:209..2181622925406.1946034-CDS-S-dermatodea_contig9412:209..218Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 210..218 +
1694079912.0572155-CDS-S-dermatodea_contig9412:209..2181694079912.0572155-CDS-S-dermatodea_contig9412:209..218Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 210..218 +
1622925406.2088969-CDS-S-dermatodea_contig9412:960..11211622925406.2088969-CDS-S-dermatodea_contig9412:960..1121Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 961..1121 +
1694079912.0671668-CDS-S-dermatodea_contig9412:960..11211694079912.0671668-CDS-S-dermatodea_contig9412:960..1121Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 961..1121 +
1622925406.2198625-CDS-S-dermatodea_contig9412:1700..18291622925406.2198625-CDS-S-dermatodea_contig9412:1700..1829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 1701..1829 +
1694079912.0769918-CDS-S-dermatodea_contig9412:1700..18291694079912.0769918-CDS-S-dermatodea_contig9412:1700..1829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 1701..1829 +
1622925406.2305763-CDS-S-dermatodea_contig9412:2930..31111622925406.2305763-CDS-S-dermatodea_contig9412:2930..3111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 2931..3111 +
1694079912.0920622-CDS-S-dermatodea_contig9412:2930..31111694079912.0920622-CDS-S-dermatodea_contig9412:2930..3111Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 2931..3111 +
1622925406.2434125-CDS-S-dermatodea_contig9412:3715..40151622925406.2434125-CDS-S-dermatodea_contig9412:3715..4015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 3716..4015 +
1694079912.1095707-CDS-S-dermatodea_contig9412:3715..40151694079912.1095707-CDS-S-dermatodea_contig9412:3715..4015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9412 3716..4015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9412.17446.1prot_S-dermatodea_contig9412.17446.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9412 210..4015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9412.17446.1

>prot_S-dermatodea_contig9412.17446.1 ID=prot_S-dermatodea_contig9412.17446.1|Name=mRNA_S-dermatodea_contig9412.17446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=260bp
MRKIADEVGAYLLTDMAHISGLVATGEASDPFPHSHVVTSTTHKSLRGPR
SGVIFSRRSGGLNDLVDFAVFPALQGGPHNHQIAALAAALKEAASPEFKG
YIQRVKANARALAAGLRARGHEVATGGTDNHLLLWDLRPKGLTGSKMEKL
LETCSISANKNTLYGDKSAAAPGGVRLGTPAMTTRGLDEADFEETVAGFL
DRAAVLACAAQERAGTKKLSAFVAEMEADEGVKELKCDVEAFACRFFYPG
GTQGIEACR*
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mRNA from alignment at S-dermatodea_contig9412:120..4663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9412.17446.1 ID=mRNA_S-dermatodea_contig9412.17446.1|Name=mRNA_S-dermatodea_contig9412.17446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4544bp|location=Sequence derived from alignment at S-dermatodea_contig9412:120..4663+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGGTTGGAGCGTCAGGCGAAGCTTTTCCGGCCGAAGCTGATCATCGC GGGGGCTAGCGCGTACTCCAGGGAGTGGGACTACGCGCGGATGAGGAAGG TGGGATACAATGTCCGGAGGTCTCATAATTTCTTGCAAGGGGCGAGCGGG GACGTTCTGGCGTGTCGTTGCTGCGGCGTCTTGCGTGTACGTGCGTTCGC AGACGTGTAGTGCTCACTGAACTTGGGGAAAATGACGAACCGGCATCGCA AGGGAACGATTTTCTATGGGTAGAAATGTAGCCGGTAGTTTGAAGTTTAC TTTTTTTTATTGCCACCAACTGCGTTGTCCTATTCTGAGTCCTCTTTTGG CATTTTTCTATATCTGGGGTGCTATTTGTTCTCTCTTGTGCCTACACTAT TATAGTTACCAGGGACGGTATGGTGTATTGTAGAAGTAAAGTTCTGATCA GGTATTTCCTCCTTTGACTATGTGCGCATCTGATCACAAGCGGAGTCGGG TCAAGCCGATCGGACCTACGTGTGCAAAGCAATAAACCAACTGCTTCAAT CGTTTCGCACTGCGTGCGGCTAAACTAAAAGCAAAGATAAAAGGAACTCT GTAAGCTTAACAATGGCTTGACCATCGCGAACACCGGATAAAAATATTGC CTTAATTGCTACGTACGGGCGATCGGAGCATTCAATCCTCGGCCTGCGAC ACCCCCCCCTCCCTTAACACACCCTGGAATGTCTTCCAAGCACGCTCAAC GTTTTGGACATTGCCAGCGCGTCTGAGCGTACTACAACGTGTCTTGCCCA TGATTATCGCTAAAACGCGTTGCTGTAAATAATGAGAACAGATCGCGGAT GAGGTGGGAGCCTACCTGCTGACGGACATGGCGCACATATCAGGGCTTGT CGCCACGGGTGAAGCGTCCGACCCGTTCCCTCACAGCCACGTCGTCACTT CCACCACGCACAAGAGTTTGAGGGGACCGAGATCCGGGGTTATTTTTTCG AGGTGTGTTCTACGTGTGCGATATGCCCTTTGGCGGTCTGCCGCCCGCCT CAGACTCTGTTTTGAGAGGCGCTCCTGGCCCGGGATACGGGAAACGTGGC GCGTGGCGGGTGATGCTCTATGGTGTTGGCATGAAGCGTCTGCATGGGTA CGTGGGTTTTCCTTCGAAGCAGACCAAGAAACGTATTATCTTGGAGTTTG TTTACGACTACCCACTTTCCGAGTCTCTCTGCAAGTTGTCGGGGGGAAAG CTATAATATTAATAGTACGATCCATGCAAAACGGTCAAGATTGCCACGCG CAGGGTTGACTAAATTGTGTATTCTGATCGCAATATCCACGTGCCGTCGG GATGAATCCCGCACTTACTTCCCGATTTGCTCGTATTAAGGAACGTCAAG TTACTACTGTCTGTTATGCCTTGCGTGCGAGTAGCTGCCCCTCCCAACGC CATGGCGAGCTGAATTGGCCCCATTGTTGTGCTCGCTCGCTAAGCCTTGC TCAGCCTTGTTCTCCTGGCTGCTTTCCCCCCCCATTTATGATTCCCTGTC TTGCCGTTATTTCGCGGGTGTGCGTCGTCAGGCGCAGCGGCGGGCTGAAT GATCTCGTAGACTTCGCCGTGTTTCCGGCGCTTCAAGGGGGCCCCCACAA TCACCAGATCGCCGCCCTCGCCGCCGCTCTCAAGGAGGCCGCCAGCCCGG AGTTTAAGGGGTGCGTGCAGGCGCGGTGTGTTTATTGCTGTCCCAAGTGT ATTGTTGCTGTAGTATTGTGCGCAACACCGTACCGTGTTTTTTTAATCCT TGCCTTGTATCTGTGTGTTGTATCATATTGATGCGCGTTGGAGCTTCTTT GCCACGGCCACTGCCACTGTCATTTATCGAGGTGCGAGCGAGTGTTCTGC TTTCACCGTGATTAAAAGGCTTGAAAGGAACAAAGCATCGTCGTGCCCCA AAAGGCGTAAAAGCGTAACCTGCTCGCGTACTCGTCGGTTCGGGCCGTCC GTGCTCTGCTGCTTTTCCGGTCTTCTCTGCCGCCGAAATGACGTTCTCCA CGATGATCTTGTGGTGTACGTACACTTGCACGCCGAATTTGTGCCGACAG ATTTACCTCTTAGGCGAGAGCGTGAGCGCTACACGCGCTCCGCCTCGCGC GAGATATCAGCTCCGACTCCGTACGACCCCTTTCGCGACATGAACAGGTC ACCGGCCTTTCGTGTACTCGTGGAAGTACATGTATCGCACACGCGCCTTT TGATGTGCCGGCCAAGAAGTGTTCAGCCACCTCAATGTAACGAACAGTGC CGACAACAAGGTCACCGTGTCGTGTTGGCAGGGTGCACGCTTGCATGCTT GCATGTCTGGTGCCATGTCTCGGACACACAGACACAACAATCGGCAAGAA GTGGCTGCCAAGCAAACGCTTGTGTGAAGAAATGCAAAAACAATACTGCT TGACAGGCAGTGGCGCATGTGTTGTTGTGGCCTAAATGCAGGGAAACTGA ATAGATTGAGGAAATTGGGTATGAGCACCACGTTCCTCCGAGCTCGACTA TATACCAGGAGCAGTCCCAAGAATCTACAGAATGCTCCTAGAAGTCGTAC CTACATCCCATGACTATTTTGATTCAGCCCTTGTGGACACACCAGTCCAT TCCCAAAGCACGCACGAGAATGTGTTTATTTCCCGACCGCTCGTTTGACT CGCCGCAATGCGCGTTGACCCAATGCATCATAGCCGATATCCAAACCTGA CAACACGGAACCTCCTACCCCTCATTCTATCGGTGACACACCGCCGTCGC CTCGGCCGCAGCTACATCCAAAGGGTGAAGGCTAACGCGCGAGCCCTGGC GGCGGGGCTGCGCGCGAGAGGGCACGAGGTGGCGACGGGGGGCACCGATA ACCATCTACTCTTGTGGGACCTTCGGCCGAAGGGATTGACGGGCTCCAAG ATGGAGAAGCTGCTAGAGACCTGCAGCATCTCGGCCAACAAGGTGTGCTG CGAGAGAGCACAGCAACGCAGAACGTCGCGCCCTCGAGGATGAGCTTGGT ATTTGCTTCGTTTCGTCTCGCTCCGGACGTGGGACTCCCTTTCCAGCCTC TTCCGCCGAGTGTACTGTAGTACAGTAGAGGTTTGATTTGTTTTTTCTCC CGCTTTGGTTTCTTCTTGCCCACGCTGGGTGTGTTAAAGAACGGTTGTCT CGCGGGATCGTTGCTACACTGCGTGGATCAGCGTATTGGCGTATTGAGAT AAGTCTGCACTGTAGAACAAAGAGCGAGCTGAATATCCTTGCAACGCTTG AAAGGGCCATTTTAGGAAAGGCGGCGTTCTCGGCTTGAGCGACGATACCG CAGTCTCGACGACTGTTATAGTATGGTACGCGCCAACACCCGGCCAATTT TTTGTTTTATTTATCTGTGTCGAACGAACAGAGTGCCACATGCCCCAAAA CGTGGCGGGCTTGCTCGTGGCGTGGCGTGGCGTGGCGAAACGCAAAGATC TTTTCGTTCTCTTCGTCGAGGTGCTGCAGTTTTCAGCGTCCATAATTTAA TGATCACTTCCCCACCGCGCTCCTCGTCTTCTGCCACCAAATGCAGAACA CGCTTTACGGGGACAAGAGCGCGGCGGCCCCTGGCGGGGTACGCCTAGGG ACACCAGCCATGACGACACGAGGTCTGGATGAAGCCGATTTTGAGGAGAC GGTGGCAGGGTTTTTAGACAGAGCGGCGGTACTCGCTTGCGCGGCTCAGG AAAGGGCGGGGACGAAGAAACTCTCGGCGTTCGTCGCAGAGATGGAAGCG GATGAGGGCGTGAAGGAGTTGAAGTGTGACGTAGAGGCGTTTGCGTGCAG GTTCTTTTACCCTGGGGGGACGCAGGGAATAGAGGCCTGTCGATGACAAT AACAATGGCGTCATCGGTTTGTAAAAATAGCGCAACTTTTGTGAGTTGGG ACTCGTGAAACGTCAGCAAAGTTTGCAGGAAATACGGAGGCGGTCCGGTC CGCCAGCAAGAAATACAAGTATGGTGGATTGGGTATAGGCGTTCGTTGGC AGCGCTTGCTGGAGATATGTGCTCCAATAATATTTTTCGAACATGACGCG GAGGCATGACCCCCTCGTATGATACGCTTTGAAACGTGTATGAGCGAACT TGCCTGAAAGTCGCGATTGCCGTTGTTGGGAAAATATGAGATGCAGCGTT TGACACGTAAATCGCGATGTTCCGCCGTATATACTTATGATGCCTTTCGC TTCAGCAGCAGCTGGGGCTGATGGTAGGAAAATCGAGCTATTTGGGGCCA AGCTCGGTTGGATTTGCCTGCAGTTCGGGGTAGAAATTACTTGCTGTTCC CGTATTTCTCGTGAGCGTTGTGTCTGCGAGCCCGTTGTGGTAGGAGGGTG AGAGGGAAAAACGAACCCATGTACGTTGCGTATTGGCCGCATGCCTCGGC TATGGCATCGCGGGTACGGCACAATGGGTGTGTCTATGGCTTGTGGGCCT TGAACTTGACGATGACGCCTGAAGAGCAATACAAAGATAGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9412:120..4663+

>mRNA_S-dermatodea_contig9412.17446.1 ID=mRNA_S-dermatodea_contig9412.17446.1|Name=mRNA_S-dermatodea_contig9412.17446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at S-dermatodea_contig9412:120..4663+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGAAGATGAGGAAGATCGCGGATGAGGTGGGAGCCTACCTGCTGAC
GGACATGGCGCACATATCAGGGCTTGTCGCCACGGGTGAAGCGTCCGACC
CGTTCCCTCACAGCCACGTCGTCACTTCCACCACGCACAAGAGTTTGAGG
GGACCGAGATCCGGGGTTATTTTTTCGAGATCGCGGATGAGGTGGGAGCC
TACCTGCTGACGGACATGGCGCACATATCAGGGCTTGTCGCCACGGGTGA
AGCGTCCGACCCGTTCCCTCACAGCCACGTCGTCACTTCCACCACGCACA
AGAGTTTGAGGGGACCGAGATCCGGGGTTATTTTTTCGAGGCGCAGCGGC
GGGCTGAATGATCTCGTAGACTTCGCCGTGTTTCCGGCGCTTCAAGGGGG
CCCCCACAATCACCAGATCGCCGCCCTCGCCGCCGCTCTCAAGGAGGCCG
CCAGCCCGGAGTTTAAGGGGCGCAGCGGCGGGCTGAATGATCTCGTAGAC
TTCGCCGTGTTTCCGGCGCTTCAAGGGGGCCCCCACAATCACCAGATCGC
CGCCCTCGCCGCCGCTCTCAAGGAGGCCGCCAGCCCGGAGTTTAAGGGCT
ACATCCAAAGGGTGAAGGCTAACGCGCGAGCCCTGGCGGCGGGGCTGCGC
GCGAGAGGGCACGAGGTGGCGACGGGGGGCACCGATAACCATCTACTCTT
GTGGGACCTTCGGCCGAAGGGATTGACGGGCTCCAAGATGGAGAAGCTGC
TAGAGACCTGCAGCATCTCGGCCAACAAGCTACATCCAAAGGGTGAAGGC
TAACGCGCGAGCCCTGGCGGCGGGGCTGCGCGCGAGAGGGCACGAGGTGG
CGACGGGGGGCACCGATAACCATCTACTCTTGTGGGACCTTCGGCCGAAG
GGATTGACGGGCTCCAAGATGGAGAAGCTGCTAGAGACCTGCAGCATCTC
GGCCAACAAGAACACGCTTTACGGGGACAAGAGCGCGGCGGCCCCTGGCG
GGGTACGCCTAGGGACACCAGCCATGACGACACGAGGTCTGGATGAAGCC
GATTTTGAGGAGACGGTGGCAGGGTTTTTAGACAGAGCGGCGGTACTCGC
TTGCGCGGCTCAGGAAAGGGCGGGGACGAAGAAACTCTCGGCGTTCGTCG
CAGAGATGGAAGCGGATGAGGGCGTGAAGGAGTTGAAGTGTGACGTAGAG
GCGTTTGCGTGCAGGTTCTTTTACCCTGGGGGGACGCAGGGAATAGAGGC
CTGTCGATGAAACACGCTTTACGGGGACAAGAGCGCGGCGGCCCCTGGCG
GGGTACGCCTAGGGACACCAGCCATGACGACACGAGGTCTGGATGAAGCC
GATTTTGAGGAGACGGTGGCAGGGTTTTTAGACAGAGCGGCGGTACTCGC
TTGCGCGGCTCAGGAAAGGGCGGGGACGAAGAAACTCTCGGCGTTCGTCG
CAGAGATGGAAGCGGATGAGGGCGTGAAGGAGTTGAAGTGTGACGTAGAG
GCGTTTGCGTGCAGGTTCTTTTACCCTGGGGGGACGCAGGGAATAGAGGC
CTGTCGATGA
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