mRNA_S-dermatodea_contig9385.17426.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9385.17426.1
Unique NamemRNA_S-dermatodea_contig9385.17426.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9385.17426.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.450e-76
Identity = 175/350 (50.00%), Postives = 211/350 (60.29%), Query Frame = 3 
Query:  312 QTQLLGGQPVSREEFGRIVAACLLPYSLTWTDATYSECLGEGNATGGGEVTGHAEGGKAK-KKRKVVRTRVEFWTSFGATLDRAREECDDVLCSDCWERVHRRGLRATHRWEGFNAGSPACEACCKNPVERKCKVXXXXXXXXXXXXXXXXXXXXXXXXXSVLEEPFGRPRCQECSRRVGDKRCANCAADLCDSCMAFVHPEVCSNNPDVVATERSTTTGN--SKSPFKKAPSXXXXXXXXLVVSTAKARKQRTEELFATLTVEGAELKANPANLSALDRLLGLEVDEYTLNAEGVQQQPEVEGGED------------------------DEEDMPLVCDICGKTPDVE 1280
            +T+  G  PVSREEF RI+A C LPYSLTW DATY  C GE    G  E  G    GKAK KKRKV+RT  +FW +FGA L  A ++CDD+LC +CWE VH+RG+RA+HRWEGF  GSPAC AC ++P ERKC VXXXXXXXXXXXXXXXXXXXXXXXX + LEEP   PRC EC RRVGD+RC +C  DLCDSC AF H   C +  +      ST  G+   K   K+A S           +  K +K+ T+E+FA+LT+EG ELK +   L ALDR+LG+  D     A                                      + ++MPLVCD+CGKTPDVE
Sbjct: 3419 KTRRAGDPPVSREEFERILAVCDLPYSLTWADATYELCNGEVGVQGEVEAYGGYGEGKAKEKKRKVLRTSEQFWAAFGAALVSAGDDCDDLLCGECWESVHKRGVRASHRWEGFRTGSPACVACRRSPAERKCNVXXXXXXXXXXXXXXXXXXXXXXXXRTCLEEPLELPRCSECHRRVGDRRCESCEVDLCDSCQAFTHARTCPHANEEGRKGSSTAGGDHSGKHAPKRASSSGAVGCGGRHPAVTKRQKRETDEIFASLTLEGTELKGDLRTLYALDRILGVVEDSSEDTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDEMPLVCDVCGKTPDVE 3768
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9385.17426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK07_ECTSI1.450e-7650.00Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9385contigS-dermatodea_contig9385:2526..6356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.2
Seed ortholog evalue3.1e-69
Seed eggNOG ortholog2880.D7FK07
EggNOG OGs28ZVB@1,2R6Q0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size1280
Cds size1257
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9385.17426.1prot_S-dermatodea_contig9385.17426.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9385 2549..6356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.6585953-UTR-S-dermatodea_contig9385:2525..25481622925404.6585953-UTR-S-dermatodea_contig9385:2525..2548Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9385 2526..2548 +
1694079910.9412055-UTR-S-dermatodea_contig9385:2525..25481694079910.9412055-UTR-S-dermatodea_contig9385:2525..2548Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9385 2526..2548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925404.6719637-CDS-S-dermatodea_contig9385:2548..31141622925404.6719637-CDS-S-dermatodea_contig9385:2548..3114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 2549..3114 +
1694079910.9515219-CDS-S-dermatodea_contig9385:2548..31141694079910.9515219-CDS-S-dermatodea_contig9385:2548..3114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 2549..3114 +
1622925404.6822128-CDS-S-dermatodea_contig9385:3817..39791622925404.6822128-CDS-S-dermatodea_contig9385:3817..3979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 3818..3979 +
1694079910.9610987-CDS-S-dermatodea_contig9385:3817..39791694079910.9610987-CDS-S-dermatodea_contig9385:3817..3979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 3818..3979 +
1622925404.6921675-CDS-S-dermatodea_contig9385:4719..48821622925404.6921675-CDS-S-dermatodea_contig9385:4719..4882Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 4720..4882 +
1694079910.971421-CDS-S-dermatodea_contig9385:4719..48821694079910.971421-CDS-S-dermatodea_contig9385:4719..4882Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 4720..4882 +
1622925404.704855-CDS-S-dermatodea_contig9385:5372..55611622925404.704855-CDS-S-dermatodea_contig9385:5372..5561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 5373..5561 +
1694079910.9871066-CDS-S-dermatodea_contig9385:5372..55611694079910.9871066-CDS-S-dermatodea_contig9385:5372..5561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 5373..5561 +
1622925404.7178638-CDS-S-dermatodea_contig9385:6179..63561622925404.7178638-CDS-S-dermatodea_contig9385:6179..6356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 6180..6356 +
1694079911.0067284-CDS-S-dermatodea_contig9385:6179..63561694079911.0067284-CDS-S-dermatodea_contig9385:6179..6356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9385 6180..6356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9385.17426.1

>prot_S-dermatodea_contig9385.17426.1 ID=prot_S-dermatodea_contig9385.17426.1|Name=mRNA_S-dermatodea_contig9385.17426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=419bp
MLQHAHSFDATDVGGRVLLPAMAANSVSISNKDSTRTATTTKSLLNGGSS
ANAANAVSTTPRLSPPPKEKPGGQTGTSSVATVSSVSLTAVRGGDQQTQL
LGGQPVSREEFGRIVAACLLPYSLTWTDATYSECLGEGNATGGGEVTGHA
EGGKAKKKRKVVRTRVEFWTSFGATLDRAREECDDVLCSDCWERVHRRGL
RATHRWEGFNAGSPACEACCKNPVERKCKVCQDLLCTSCFKTSHARGKKR
RHSWESVLEEPFGRPRCQECSRRVGDKRCANCAADLCDSCMAFVHPEVCS
NNPDVVATERSTTTGNSKSPFKKAPSSGGGGSGGLVVSTAKARKQRTEEL
FATLTVEGAELKANPANLSALDRLLGLEVDEYTLNAEGVQQQPEVEGGED
DEEDMPLVCDICGKTPDVE
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mRNA from alignment at S-dermatodea_contig9385:2526..6356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9385.17426.1 ID=mRNA_S-dermatodea_contig9385.17426.1|Name=mRNA_S-dermatodea_contig9385.17426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3831bp|location=Sequence derived from alignment at S-dermatodea_contig9385:2526..6356+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCGCTCGTTATTGCTGCCCGAATGCTGCAGCACGCACACTCTTTCGAC
GCAACGGACGTGGGAGGACGCGTTTTGCTGCCTGCCATGGCGGCGAACTC
CGTTTCGATATCAAACAAGGACTCCACGAGGACGGCAACGACGACGAAAA
GCTTACTTAACGGTGGAAGTTCGGCAAACGCGGCAAACGCAGTATCGACG
ACGCCACGTTTGTCGCCCCCGCCCAAAGAAAAACCAGGCGGACAGACGGG
AACATCGTCAGTGGCGACGGTGTCAAGCGTCAGTTTGACGGCGGTCCGGG
GAGGTGACCAGCAAACGCAGCTGTTGGGCGGCCAGCCTGTCTCGCGCGAG
GAGTTTGGGCGTATCGTGGCCGCCTGCCTTCTCCCCTATAGCCTTACCTG
GACGGACGCAACCTACAGCGAATGCTTAGGAGAGGGAAACGCCACGGGGG
GTGGGGAGGTAACAGGCCACGCCGAGGGCGGCAAGGCAAAGAAGAAGAGG
AAGGTAGTGCGGACACGGGTGGAATTTTGGACATCCTTTGGCGCTACGCT
GGACAGGGCACGAGAGGAGTGCGACGATGTGCTGTGCAGGTGAGCGCGAA
GCGGTTCGTGTTTGCTGTTGGGCGGGGAATTTATGGGGCCGACTGTTACC
TTAGTCAAGCCAAGAAGCGCCATAATATATCCAGGTGGACCGATCATATG
CCTGAAGTTCTTCAGGTCTCGGATATGTTGAATGGAGACGGATTCTCTGC
ATGTTGCCCTGCAACCACAGACACCGTGGACCATATCTGTATTTCTTTGA
GCCGTTTCTATCGGAGCTAATTTTCTTGCGAAAACGGACACCTCACGAAA
CACGAAACGTGAGTTTGTAAGACTTTTTACAAACCTGGCGTTTCGTGAAT
TGAACCGTCACGTTCTTTTTCGTACCAGTATGTGTTTCATTCGCGAAACG
TGAGCTGCCTTTTTTTGCCGCGGTATGGCGGAGATCAGAAAAGCAGCGCA
CTGGCTCTCTCAAGTTTCGTAAGAGGAACAGCCCTCGATAGAAACGGCCC
TAGTATTATGCCGGAAGGAACTTCTGAATATTGCTCGAGCGTTACTATGC
CGCATTTTGCGATGGAGAATGACTGCGTACCTCATACGGACCTTAATATC
CCGGTGATATTCCCGTTGCTAGCCTTTGCAGTGAGGTTTACGGTCGACAC
GCGATGAACCACCACAGGGGTGACATTATGGACGTTTGGTGCATTCCTAA
TACAAATAACATATCGCGTGCATATTTGTTTTCATGCCGCAGCGATTGCT
GGGAGCGTGTTCACCGGCGGGGTCTTCGAGCAACGCATCGCTGGGAGGGT
TTCAACGCGGGGTCACCGGCGTGCGAGGCATGTTGCAAGAACCCTGTAGA
GCGGAAGTGCAAGGTCTGCCAAGACCTGCTATGCACGTCTTGCTTCAAAA
CGAGGTGTGGACGCGGTGTAGAATTCTAGGGAATTCCTTTCTGGCTCATA
AACACAATTTTACCCCTGTGGTAGGAACGCATTATGTTTCTCGAAGCCGG
TGCCTGCCTTTTGAGCACCCGAAAGCAGTAATCAGCCCGATGTACGATAC
ATTTGGTGCTCGTTTCGTCTTGATGCTTGATCGAAACATCGAGCGACGGG
TATCGTCTTGCCTCAAGGACAAAGTTCCGAGGTGTTTTCCGAGAGTTTGT
GTCAATCTCCTCTTGTTGTGGACTATACACAGTAGGGTATTCCTTAGTTT
GTACCCACTAGCCTGAGCTCTACTGCGACACCAATGCAGACTGACTGAGG
TAACTATCATACGCCTTCTACAATCTCGAGGCAATGCACATCCATCCGTA
ACATTCTCCGGACGTTTCTCCGACCGACTCTCTGAACATGCTACAGACCG
ATACTCTCACTCTTAGGAAATCCAGATTCCAATTCTGGAATCCTTCCCTT
TTGTTCGGCCTCTCGATATCTCCTTTGACCACGAGCGGGATCGTCAACCT
TTGGTGGGCCGGTCTGTTGCGAGTATTATAACCAATCAATCAAAATCGAC
CAAGAGCCAGACCTACAAGTGTGCGCGCAGTATCTACGTCAAACGACCCG
GACCGCTGGGTCACGCTCTACACTCCTAACGGTAAGATCCTGTTCACCTG
ACACCCGCGCCATATTGAAATGTTAATTTTTTTGGATGCGACAGCCATGC
CCGAGGGAAGAAACGGCGACACTCCTGGGAGTCGGTTTTAGAAGAGCCGT
TCGGACGGCCGCGTTGTCAAGAGTGCTCCAGACGGGTGGGAGACAAGCGG
TGCGCAAACTGCGCGGCAGACCTGTGCGATTCGTGCATGGCCTTTGTGCA
CCCCGAGGTGAGCTTGTTTCTATTCGGAATGCGAAGACAAGGTTTAAAGC
TTGAAATTCGGCCGTTAAGGATGGCGAACGTTCATTCAGACACTATCGGT
GATCGTGTTTTCGTGTTTATCTCTGTGATACAAAGGATTACGCCTTGATC
TGAGGTAGAGAAAGGCGCGGCAGCTGTTTTATCGAGAAGGTTACGACAAG
AAAGTGTCGATTGACCCTCGTAACGGCTTGTACACGCTATGGCGCTCGGT
CATGCAATTTTTTGTGGGCAAGGCCAGGTCACGGAGAAAAGTTCCTGCAA
CGGAAACGATCCTGAACATATCGTCAACAACCCACCCCTCCCCGGGGCAG
TATTCCAGTCCTGCCGCTATGGCCAGGGTAGAATGGCAAAGCGACAACAG
CGAGGTGCATTGCGCCGTTGTATCACGCGCAAACCACCCTTCGGGGCACA
GTGTTGCCACGTGGTTTATGGTGCGTGGACTCTCTTCTCTGCTTTAGGTG
TGCTCCAACAATCCTGACGTGGTCGCGACTGAACGCAGCACGACCACCGG
CAATTCTAAAAGTCCGTTCAAGAAGGCCCCGTCAAGCGGAGGTGGCGGAT
CCGGGGGGCTGGTGGTATCGACCGCAAAAGCAAGGAAGCAACGGACAGAG
GAATTGTTTGCCACGTTGACAGTGGAAGGGGCGGAGGTTTGTGCTGTCGT
CCTTGTGTGCGGTTTCACATAAATTAATCCGTTGCAATTCCAGCCGTGGT
TACAGTGATAGATGGAAGACGAGGGTGCCAGAGAAGCGAGAAGCAGAGAG
ACGAGATATCAGAGCGGAAAATAGGGAGAGCTACTGCACAAAGTTTTAGT
CGCCAAGGGAAGAGAGCAAGAGATGAAAAGAGCAACAAGCGAAGAGGTTA
ACCGGGAGCAGCGAAACGAAAAAGCGATTCTCAGGGCAGCCTTGTGAGAG
ACAAGTGGGGAAAGCTAGACCGTCGTTGTTGTAGCAGATGAAAGGGTCCG
TGAAAAATGAAAAACATGTGCCGTCAGGGGGGATTTGGGCAGGTGCCTTG
TAGAACGTGTAGAAAGGCCGTCAGGCGTGAAGCGCGGCGGACCTAGGAAC
GACCGCGGAGATATTGCTAGCTGCGACCGAATGGCTGTGGGCACCGCGCG
CCGTGGATCATTCCTCGTACAAGTGTTGATAAGGAGTCTCGCCATTGTCT
GTGACCCATAGAACGCCGCGTATCCTCAACACTCCCCAATCTTTCCGTCT
GCGTGGCTTTCGTCTTGTGGCGAAACACGCGCGAAAACAACCGCTACGTC
GCAGCTCAAAGCGAACCCTGCAAACCTGAGCGCCCTCGACCGCCTACTCG
GACTTGAGGTAGACGAATACACGTTGAACGCGGAGGGGGTGCAGCAGCAA
CCAGAAGTGGAGGGAGGGGAGGACGATGAGGAAGACATGCCGCTGGTGTG
TGATATATGCGGTAAAACTCCGGACGTTGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9385:2526..6356+

>mRNA_S-dermatodea_contig9385.17426.1 ID=mRNA_S-dermatodea_contig9385.17426.1|Name=mRNA_S-dermatodea_contig9385.17426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at S-dermatodea_contig9385:2526..6356+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCAGCACGCACACTCTTTCGACGCAACGGACGTGGGAGGACGCGT
TTTGCTGCCTGCCATGGCGGCGAACTCCGTTTCGATATCAAACAAGGACT
CCACGAGGACGGCAACGACGACGAAAAGCTTACTTAACGGTGGAAGTTCG
GCAAACGCGGCAAACGCAGTATCGACGACGCCACGTTTGTCGCCCCCGCC
CAAAGAAAAACCAGGCGGACAGACGGGAACATCGTCAGTGGCGACGGTGT
CAAGCGTCAGTTTGACGGCGGTCCGGGGAGGTGACCAGCAAACGCAGCTG
TTGGGCGGCCAGCCTGTCTCGCGCGAGGAGTTTGGGCGTATCGTGGCCGC
CTGCCTTCTCCCCTATAGCCTTACCTGGACGGACGCAACCTACAGCGAAT
GCTTAGGAGAGGGAAACGCCACGGGGGGTGGGGAGGTAACAGGCCACGCC
GAGGGCGGCAAGGCAAAGAAGAAGAGGAAGGTAGTGCGGACACGGGTGGA
ATTTTGGACATCCTTTGGCGCTACGCTGGACAGGGCACGAGAGGAGTGCG
ACGATGTGCTGTGCAGATGCTGCAGCACGCACACTCTTTCGACGCAACGG
ACGTGGGAGGACGCGTTTTGCTGCCTGCCATGGCGGCGAACTCCGTTTCG
ATATCAAACAAGGACTCCACGAGGACGGCAACGACGACGAAAAGCTTACT
TAACGGTGGAAGTTCGGCAAACGCGGCAAACGCAGTATCGACGACGCCAC
GTTTGTCGCCCCCGCCCAAAGAAAAACCAGGCGGACAGACGGGAACATCG
TCAGTGGCGACGGTGTCAAGCGTCAGTTTGACGGCGGTCCGGGGAGGTGA
CCAGCAAACGCAGCTGTTGGGCGGCCAGCCTGTCTCGCGCGAGGAGTTTG
GGCGTATCGTGGCCGCCTGCCTTCTCCCCTATAGCCTTACCTGGACGGAC
GCAACCTACAGCGAATGCTTAGGAGAGGGAAACGCCACGGGGGGTGGGGA
GGTAACAGGCCACGCCGAGGGCGGCAAGGCAAAGAAGAAGAGGAAGGTAG
TGCGGACACGGGTGGAATTTTGGACATCCTTTGGCGCTACGCTGGACAGG
GCACGAGAGGAGTGCGACGATGTGCTGTGCAGCGATTGCTGGGAGCGTGT
TCACCGGCGGGGTCTTCGAGCAACGCATCGCTGGGAGGGTTTCAACGCGG
GGTCACCGGCGTGCGAGGCATGTTGCAAGAACCCTGTAGAGCGGAAGTGC
AAGGTCTGCCAAGACCTGCTATGCACGTCTTGCTTCAAAACGAGCGATTG
CTGGGAGCGTGTTCACCGGCGGGGTCTTCGAGCAACGCATCGCTGGGAGG
GTTTCAACGCGGGGTCACCGGCGTGCGAGGCATGTTGCAAGAACCCTGTA
GAGCGGAAGTGCAAGGTCTGCCAAGACCTGCTATGCACGTCTTGCTTCAA
AACGAGCCATGCCCGAGGGAAGAAACGGCGACACTCCTGGGAGTCGGTTT
TAGAAGAGCCGTTCGGACGGCCGCGTTGTCAAGAGTGCTCCAGACGGGTG
GGAGACAAGCGGTGCGCAAACTGCGCGGCAGACCTGTGCGATTCGTGCAT
GGCCTTTGTGCACCCCGAGCCATGCCCGAGGGAAGAAACGGCGACACTCC
TGGGAGTCGGTTTTAGAAGAGCCGTTCGGACGGCCGCGTTGTCAAGAGTG
CTCCAGACGGGTGGGAGACAAGCGGTGCGCAAACTGCGCGGCAGACCTGT
GCGATTCGTGCATGGCCTTTGTGCACCCCGAGGTGTGCTCCAACAATCCT
GACGTGGTCGCGACTGAACGCAGCACGACCACCGGCAATTCTAAAAGTCC
GTTCAAGAAGGCCCCGTCAAGCGGAGGTGGCGGATCCGGGGGGCTGGTGG
TATCGACCGCAAAAGCAAGGAAGCAACGGACAGAGGAATTGTTTGCCACG
TTGACAGTGGAAGGGGCGGAGGTGTGCTCCAACAATCCTGACGTGGTCGC
GACTGAACGCAGCACGACCACCGGCAATTCTAAAAGTCCGTTCAAGAAGG
CCCCGTCAAGCGGAGGTGGCGGATCCGGGGGGCTGGTGGTATCGACCGCA
AAAGCAAGGAAGCAACGGACAGAGGAATTGTTTGCCACGTTGACAGTGGA
AGGGGCGGAGCTCAAAGCGAACCCTGCAAACCTGAGCGCCCTCGACCGCC
TACTCGGACTTGAGGTAGACGAATACACGTTGAACGCGGAGGGGGTGCAG
CAGCAACCAGAAGTGGAGGGAGGGGAGGACGATGAGGAAGACATGCCGCT
GGTGTGTGATATATGCGGTAAAACTCCGGACGTTGAGCTCAAAGCGAACC
CTGCAAACCTGAGCGCCCTCGACCGCCTACTCGGACTTGAGGTAGACGAA
TACACGTTGAACGCGGAGGGGGTGCAGCAGCAACCAGAAGTGGAGGGAGG
GGAGGACGATGAGGAAGACATGCCGCTGGTGTGTGATATATGCGGTAAAA
CTCCGGACGTTGAG
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