mRNA_S-dermatodea_contig9370.17411.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9370.17411.1
Unique NamemRNA_S-dermatodea_contig9370.17411.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9370.17411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9370contigS-dermatodea_contig9370:3861..4634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size774
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.7632003-UTR-S-dermatodea_contig9370:3860..42471622925403.7632003-UTR-S-dermatodea_contig9370:3860..4247Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9370 3861..4247 +
1694079910.3709056-UTR-S-dermatodea_contig9370:3860..42471694079910.3709056-UTR-S-dermatodea_contig9370:3860..4247Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9370 3861..4247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.7729192-CDS-S-dermatodea_contig9370:4247..46341622925403.7729192-CDS-S-dermatodea_contig9370:4247..4634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9370 4248..4634 +
1694079910.3811817-CDS-S-dermatodea_contig9370:4247..46341694079910.3811817-CDS-S-dermatodea_contig9370:4247..4634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9370 4248..4634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9370.17411.1prot_S-dermatodea_contig9370.17411.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9370 4248..4634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9370.17411.1

>prot_S-dermatodea_contig9370.17411.1 ID=prot_S-dermatodea_contig9370.17411.1|Name=mRNA_S-dermatodea_contig9370.17411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
MIGVNADSRIEFAIVDHVRLGKYRHYLCPPVAISVSGAVGWRAVVLDPLL
LHFSSHADGLEHTPLMYLNILSKICENLYSSLLVRQQHYTFKAPRPVLAS
FWNFLSSRRPMRHYSLTKHDDARLGMASL
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mRNA from alignment at S-dermatodea_contig9370:3861..4634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9370.17411.1 ID=mRNA_S-dermatodea_contig9370.17411.1|Name=mRNA_S-dermatodea_contig9370.17411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig9370:3861..4634+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGAGGTCATCCTTGGCGCGATCATCGGGGCTCTGGCCGGTGTCGTAGG
AATCGTGTTCCGTAGGTACGAAGCACACCGGCGTTCAAGACACCTAAATT
TGTGCCATCCGTATCACGCAGCTTTACAAGGAGTAGTGAATAGTCACGGG
TCGAATGGCGGGTTTGCCCACATGTTTGAGACGCGAAAAAGTGCACGCTG
GGGGCACCAGCCATTGCGTTGCTCTACATGCCAGTCGGTTGTACGTGTGA
TAAGCAAACAATCGATCAATGCGCTTCAACTTGGTCATGGCGCGTCATCA
AAACCTCTATCTTCCCTACGGGGCAGCTGGCACATGATTTTATACAAGCC
CCACGTGAAAGTGCTCAGTTTGGGATAGAGGGGGTTGATGATTGGCGTAA
ACGCTGACTCAAGGATCGAGTTCGCAATTGTAGATCATGTTCGTCTTGGG
AAGTACCGGCATTATCTGTGCCCACCGGTGGCAATCAGTGTATCGGGGGC
AGTAGGTTGGCGTGCGGTGGTTCTCGATCCTCTTTTGCTGCACTTCAGCA
GCCACGCAGACGGACTCGAACACACACCCTTGATGTATTTAAACATACTC
TCCAAAATTTGCGAAAACTTGTACTCAAGCCTTCTCGTGCGTCAACAGCA
TTACACTTTCAAGGCCCCACGCCCGGTGCTAGCTTCGTTCTGGAACTTCC
TTTCTTCACGCCGGCCAATGCGACATTACTCACTAACAAAACACGATGAT
GCCCGCCTTGGCATGGCTTCGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9370:3861..4634+

>mRNA_S-dermatodea_contig9370.17411.1 ID=mRNA_S-dermatodea_contig9370.17411.1|Name=mRNA_S-dermatodea_contig9370.17411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig9370:3861..4634+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTGGCGTAAACGCTGACTCAAGGATCGAGTTCGCAATTGTAGATCA
TGTTCGTCTTGGGAAGTACCGGCATTATCTGTGCCCACCGGTGGCAATCA
GTGTATCGGGGGCAGTAGGTTGGCGTGCGGTGGTTCTCGATCCTCTTTTG
CTGCACTTCAGCAGCCACGCAGACGGACTCGAACACACACCCTTGATGTA
TTTAAACATACTCTCCAAAATTTGCGAAAACTTGTACTCAAGCCTTCTCG
TGCGTCAACAGCATTACACTTTCAAGGCCCCACGCCCGGTGCTAGCTTCG
TTCTGGAACTTCCTTTCTTCACGCCGGCCAATGCGACATTACTCACTAAC
AAAACACGATGATGCCCGCCTTGGCATGGCTTCGTTGATGATTGGCGTAA
ACGCTGACTCAAGGATCGAGTTCGCAATTGTAGATCATGTTCGTCTTGGG
AAGTACCGGCATTATCTGTGCCCACCGGTGGCAATCAGTGTATCGGGGGC
AGTAGGTTGGCGTGCGGTGGTTCTCGATCCTCTTTTGCTGCACTTCAGCA
GCCACGCAGACGGACTCGAACACACACCCTTGATGTATTTAAACATACTC
TCCAAAATTTGCGAAAACTTGTACTCAAGCCTTCTCGTGCGTCAACAGCA
TTACACTTTCAAGGCCCCACGCCCGGTGCTAGCTTCGTTCTGGAACTTCC
TTTCTTCACGCCGGCCAATGCGACATTACTCACTAACAAAACACGATGAT
GCCCGCCTTGGCATGGCTTCGTTG
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