mRNA_S-dermatodea_contig93445.17391.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93445.17391.1
Unique NamemRNA_S-dermatodea_contig93445.17391.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: D8LKK8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 9.620e-22
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    4 QVPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            QVPKNAKGG+LVCE+++KAAF+FFDVEGKGVITA ALRK+LGAF RSLSAR
Sbjct:    8 QVPKNAKGGILVCEEELKAAFDFFDVEGKGVITAGALRKKLGAFHRSLSAR 58
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A835ZDH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.230e-13
Identity = 29/51 (56.86%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    4 QVPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            +VPKN+KGGVLV +++++A FEFFDV+G+GVIT++ +RKR+GAF ++++ R
Sbjct:   29 EVPKNSKGGVLVTDEELRAVFEFFDVDGRGVITSTCIRKRMGAFYKNMNPR 79
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: F0YPY1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPY1_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-11
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 VPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            VP+N+KGGVLV E+++KAAF+FFDV+  G IT   LRKRLG F +++ A+
Sbjct:    1 VPRNSKGGVLVTEEELKAAFDFFDVDSSGKITLGNLRKRLGVFYKNMPAK 50
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A7S2C3J7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3J7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.140e-11
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    7 VPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            VPKN KGGVLV +D++ AAFEFFD++G G IT + LRKRLG F +++ A+
Sbjct:   27 VPKNEKGGVLVTDDELAAAFEFFDMDGSGKITMTNLRKRLGVFYKNMPAK 76
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A024TCL1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCL1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.080e-10
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 QVPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            QV +NAKGGVLV ++ I+AAF+FFDVE KGV+T   L+ RLG F + +S R
Sbjct:   27 QVLRNAKGGVLVTKEQIRAAFDFFDVERKGVVTMENLKSRLGIFYKDMSTR 77
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A8J2SJG6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJG6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-10
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    7 VPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAF 135
            VP+N++GGVLV ++++K+AF+FFDVEG G IT + L+KRLG F
Sbjct:   16 VPRNSRGGVLVTDEELKSAFDFFDVEGSGKITQAQLKKRLGVF 58
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A7S2S2D3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.670e-10
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    7 VPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            VPKNA GGVLV E +++AAF+FFD++G G ITAS L+KRL  F + + A+
Sbjct:   19 VPKNASGGVLVTEQELEAAFDFFDLDGTGTITASNLKKRLEVFYKDMPAK 68
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: W4FTS4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTS4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.970e-9
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 QVPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            QV +N  GGVLV +D I+AAF+FFDVE  GV+T   L+ RLG F + +S R
Sbjct:   25 QVLRNENGGVLVTKDQIRAAFDFFDVEHNGVVTMDNLKSRLGVFYKDMSTR 75
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A1Q9EGJ5_SYMMI (EF-hand domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EGJ5_SYMMI)

HSP 1 Score: 57.4 bits (137), Expect = 7.610e-9
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 VPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLSAR 156
            +P+N KGG+L+ ED++K A+EFFD  GKG +T S +++RL  F + ++ R
Sbjct:   69 LPRNEKGGILITEDELKVAWEFFDTSGKGKLTMSEIKRRLQTFYKDITTR 118
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BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Match: A0A6V1U3T1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3T1_HETAK)

HSP 1 Score: 58.2 bits (139), Expect = 8.350e-9
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    7 VPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSL 147
            + +N+KGGVLV E +IKAAF+FFD++ +G IT   LRKRLG F +++
Sbjct:   27 IRRNSKGGVLVTEAEIKAAFDFFDIDNEGKITLQNLRKRLGVFYKNM 73
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93445.17391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKK8_ECTSI9.620e-2284.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH5_9STRA1.230e-1356.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YPY1_AURAN1.500e-1158.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2C3J7_9STRA2.140e-1160.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A024TCL1_9STRA1.080e-1058.82Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A8J2SJG6_9STRA1.630e-1060.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2S2D3_9STRA1.670e-1058.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W4FTS4_9STRA2.970e-954.90Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1Q9EGJ5_SYMMI7.610e-946.00EF-hand domain-containing protein n=1 Tax=Symbiodi... [more]
A0A6V1U3T1_HETAK8.350e-955.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93445contigS-dermatodea_contig93445:399..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D8LKK8
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG OGs2BWVD@1,2S374@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-16_003330.1
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.9157672-CDS-S-dermatodea_contig93445:398..5541622925401.9157672-CDS-S-dermatodea_contig93445:398..554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93445 399..554 +
1694079909.0005152-CDS-S-dermatodea_contig93445:398..5541694079909.0005152-CDS-S-dermatodea_contig93445:398..554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93445 399..554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93445.17391.1prot_S-dermatodea_contig93445.17391.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93445 399..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93445.17391.1

>prot_S-dermatodea_contig93445.17391.1 ID=prot_S-dermatodea_contig93445.17391.1|Name=mRNA_S-dermatodea_contig93445.17391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=52bp
MQVPKNAKGGVLVCEDDIKAAFEFFDVEGKGVITASALRKRLGAFRRSLS
AR
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mRNA from alignment at S-dermatodea_contig93445:399..554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93445.17391.1 ID=mRNA_S-dermatodea_contig93445.17391.1|Name=mRNA_S-dermatodea_contig93445.17391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig93445:399..554+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTTCCTAAGAACGCCAAGGGCGGGGTCCTCGTCTGTGAGGATGA
CATCAAAGCAGCTTTTGAATTCTTCGACGTCGAAGGAAAGGGGGTTATCA
CAGCCTCAGCCTTACGCAAGCGGCTCGGGGCCTTCCGCCGCTCATTGAGT
GCCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig93445:399..554+

>mRNA_S-dermatodea_contig93445.17391.1 ID=mRNA_S-dermatodea_contig93445.17391.1|Name=mRNA_S-dermatodea_contig93445.17391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig93445:399..554+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTTCCTAAGAACGCCAAGGGCGGGGTCCTCGTCTGTGAGGATGA
CATCAAAGCAGCTTTTGAATTCTTCGACGTCGAAGGAAAGGGGGTTATCA
CAGCCTCAGCCTTACGCAAGCGGCTCGGGGCCTTCCGCCGCTCATTGAGT
GCCCGGATGCAGGTTCCTAAGAACGCCAAGGGCGGGGTCCTCGTCTGTGA
GGATGACATCAAAGCAGCTTTTGAATTCTTCGACGTCGAAGGAAAGGGGG
TTATCACAGCCTCAGCCTTACGCAAGCGGCTCGGGGCCTTCCGCCGCTCA
TTGAGTGCCCGG
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