mRNA_S-dermatodea_contig9330.17379.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9330.17379.1
Unique NamemRNA_S-dermatodea_contig9330.17379.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: D7FWC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC3_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 5.730e-42
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +ELIPEFYAGDGSFLTN DDLQLGVTQ GQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDL+FG  QRG
Sbjct:  400 KELIPEFYAGDGSFLTNADDLQLGVTQVGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLVFGYLQRG 477
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A6H5KC57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC57_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.730e-42
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +ELIPEFYAGDGSFLTN DDLQLGVTQ GQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDL+FG  QRG
Sbjct:  329 KELIPEFYAGDGSFLTNADDLQLGVTQVGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLVFGYLQRG 406
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A835ZAZ6_9STRA (BEACH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 2.360e-35
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +ELIPEFYAG G FL N DDLQLGVTQ GQR+GDVELPPWAR+ RDF+ + R ALES HVS RLHLWIDLIFGCKQRG
Sbjct:  547 KELIPEFYAGSGKFLGNTDDLQLGVTQTGQRLGDVELPPWARSGRDFIARCRAALESAHVSARLHLWIDLIFGCKQRG 624
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: F0Y231_AURAN (BEACH domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y231_AURAN)

HSP 1 Score: 122 bits (306), Expect = 5.460e-32
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +ELIPEFY GDG FL N  ++ LGVTQ G+R+GDV+LPPWARNP DFV++ R ALES +VS RLH WIDL+FGCKQR 
Sbjct:  211 KELIPEFYDGDGEFLVNGRNVPLGVTQAGERLGDVKLPPWARNPADFVKRCRAALESDYVSARLHHWIDLVFGCKQRS 288
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A5A8DZZ7_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZZ7_CAFRO)

HSP 1 Score: 125 bits (313), Expect = 1.410e-31
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +EL PEFY+GDG FL N   L LG+ Q G+ VGDVELPPW R+PRDFVR+MR ALES HVS+ +H WIDL+FGCKQRG
Sbjct:  589 KELTPEFYSGDGRFLRNSRGLDLGLLQAGESVGDVELPPWCRSPRDFVRRMREALESDHVSQHIHAWIDLVFGCKQRG 666
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A5A8C7D5_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7D5_CAFRO)

HSP 1 Score: 125 bits (313), Expect = 1.420e-31
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +EL PEFY+GDG FL N   L LG+ Q G+ VGDVELPPW R+PRDFVR+MR ALES HVS+ +H WIDL+FGCKQRG
Sbjct:  590 KELTPEFYSGDGRFLRNSRGLDLGLLQAGESVGDVELPPWCRSPRDFVRRMREALESDHVSQHIHAWIDLVFGCKQRG 667
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A7R9UF46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF46_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.120e-30
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +EL+PEFY+G+G FLTN   L LG+TQ   RV DVELPPWA++PRDFVRK R+ALES +VS  LHLWIDLIFG KQ+G
Sbjct:  541 KELVPEFYSGNGDFLTNSQGLDLGMTQRRDRVDDVELPPWAKSPRDFVRKCRKALESEYVSEHLHLWIDLIFGYKQKG 618
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A7S0QPW7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPW7_9CRYP)

HSP 1 Score: 111 bits (278), Expect = 3.490e-28
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +EL+PEFY  D SFL NR  L LG   GG+ VGDV LPPWA  P DF+ K+R+ALE  HVS ++H WIDL+FGCKQRG
Sbjct:  165 KELVPEFYGADSSFLVNRLGLDLGTRSGGEVVGDVLLPPWADGPDDFLDKLRQALEGEHVSGQIHAWIDLVFGCKQRG 242
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: A0A7S4L8L7_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L8L7_GUITH)

HSP 1 Score: 107 bits (268), Expect = 4.680e-28
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRALESPHVSRRLHLWIDLIFGCKQRG 237
            +ELIPEF+   G FL NR DL LGV   G+R+ DV+LPPWA +P+DF RK R+ALES +VS  LH WIDLIFG KQ+G
Sbjct:    8 KELIPEFFQSQGDFLLNRLDLDLGVRHDGERLHDVQLPPWASSPKDFTRKNRQALESKYVSEHLHHWIDLIFGFKQQG 85
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BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Match: K8Z510_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z510_NANGC)

HSP 1 Score: 114 bits (286), Expect = 5.770e-28
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    4 QELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVRKMRRAL-ESPHVSRRLHLWIDLIFGCKQRG 237
            +ELIPEFY   G FL N + L LG TQGG R+GDV LPPWARN RDFVRKMRRAL +S +VS+ LH WIDLIFG KQ+G
Sbjct:  561 KELIPEFYFSQGDFLVNVEGLPLGTTQGGVRLGDVALPPWARNERDFVRKMRRALNDSTYVSQHLHEWIDLIFGVKQKG 639
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9330.17379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWC3_ECTSI5.730e-4292.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC57_9PHAE5.730e-4292.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAZ6_9STRA2.360e-3579.49BEACH domain-containing protein n=1 Tax=Tribonema ... [more]
F0Y231_AURAN5.460e-3269.23BEACH domain-containing protein (Fragment) n=1 Tax... [more]
A0A5A8DZZ7_CAFRO1.410e-3169.23Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A5A8C7D5_CAFRO1.420e-3169.23Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7R9UF46_9STRA5.120e-3069.23Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0QPW7_9CRYP3.490e-2862.82Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S4L8L7_GUITH4.680e-2862.82Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
K8Z510_NANGC5.770e-2869.62Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9330contigS-dermatodea_contig9330:4617..6865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7FWC3
KEGG koko:K18953,ko:K22262
KEGG Pathwayko04071,map04071
EggNOG free text desc.aggrephagy
EggNOG OGsKOG1786@1,KOG1786@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.019319-CDS-S-dermatodea_contig9330:4617..47701622925401.019319-CDS-S-dermatodea_contig9330:4617..4770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9330 4618..4770 -
1694079908.3661575-CDS-S-dermatodea_contig9330:4617..47701694079908.3661575-CDS-S-dermatodea_contig9330:4617..4770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9330 4618..4770 -
1622925401.0324826-CDS-S-dermatodea_contig9330:6781..68651622925401.0324826-CDS-S-dermatodea_contig9330:6781..6865Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9330 6782..6865 -
1694079908.3792253-CDS-S-dermatodea_contig9330:6781..68651694079908.3792253-CDS-S-dermatodea_contig9330:6781..6865Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9330 6782..6865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9330.17379.1prot_S-dermatodea_contig9330.17379.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9330 4618..6865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9330.17379.1

>prot_S-dermatodea_contig9330.17379.1 ID=prot_S-dermatodea_contig9330.17379.1|Name=mRNA_S-dermatodea_contig9330.17379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
PQELIPEFYAGDGSFLTNRDDLQLGVTQGGQRVGDVELPPWARNPRDFVR
KMRRALESPHVSRRLHLWIDLIFGCKQRG
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mRNA from alignment at S-dermatodea_contig9330:4617..6865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9330.17379.1 ID=mRNA_S-dermatodea_contig9330.17379.1|Name=mRNA_S-dermatodea_contig9330.17379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2249bp|location=Sequence derived from alignment at S-dermatodea_contig9330:4617..6865- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCAGGAGCTGATCCCGGAGTTCTACGCGGGGGATGGGTCTTTCCTCAC
CAACCGCGACGACCTGCAGCTGGGGGTGACGCAGGTGCGCTTGCCGTTTT
TGCCTTCGTCGATACATATCATCTTCATTCATATTATACTACAGTAAATA
GTAGGTAGCCACGCCTACGCCCGCGAGGTGTGCGTGGTCGCTCAACTCTA
AAATCAAGTTGTTTGGCCTCAAAATCGTAAAGGAATTTAGTGTACAAAAT
TGGCCTCACAATCATATAGGAGTTTAGTGTGCAAAATCGGCCTCTAAATC
GTATGGGGGTTTAGGTGCAAAATCGGCCTCAAAATCGTATAGAAAATAGT
GTGGAATAAACGCTCAAAGCGGTATTAATTCGTAAGAGATGATATAATAG
CGATATCGAGTGCCAGTAGGCTGTCATATTTGTTAGGGATTTTGTAAGCT
TTCGATTTTTTATTTATTTTATTTTTATTGCTGCTGTTTGTTTTTTTTGC
GCGGGCCGAAAAGCCTTAATTCATCGAAAAATGGCAGTGAGTACACGCAA
TAGTAACACAACACTGACGTGTTCATAGGCTCTACTTGTATAGAAGTTGC
AACGAAAACTTGAACAAACACGCTTCAATTGGAAGAAAAAAGCAACCCGA
GAACACGCAAATTGATTACTAACGCCTAAAGTTCACCGGCAGGCACACAC
GCGGTTCTTGACATATCTGTCTCGCTCGTCCCAGCCCTTGCTGCTTACAC
CGATCTCAGCTGTGTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCACACTCAACAACAAAAAACAAAAACAACATACAAAACTACGCCACAC
ACCATCACTTTTAGATTATAGAAAGAAANNNNNNNNNNCGGTTCTTTCTC
TTTCTGTCTCCCCCCCCCCCCCCCTTCCTTCTTACCCCCCCCTCAGCTGT
CTCCCCCCCCCCCCCCCCCCCTCCCCCCTGAAGACACCATATATTTATAA
ACATAGAACTACTGTATTATAACATTGGGGTCCAACCAATCTTTTTTGTA
GAGGAAGAAAGATGACCCAATCTAACTCAGTGGAAGACTAAGCCTACATT
ACATTACATACGATATGATGCTATCGTGTCACATTAAAATCAAGAGGTAC
GATATGATGCTATCGTGTCACATTAAAATCAAGAGGTACGATGCAATCTA
TCGTGTCACATTAAAATCAAGAGGTACGATGCAATCTATCGTGTCACATT
AAAATCAAGAGGTAACTCTAGGCCCTTTGTTTTCGAACATATTCTACCCC
CCCCCCTCCCCTCCCCCCCCTCACAAAAAGAAACAACAAAAAAACCAAAA
CNNNNNNNNNNAATACAAACATATAATACAAATTTATTTTTCCTCTAAAA
TAAAAAAATAGAACCACCACCCTTGTTTTCCTACCCCTTCCCCCCCCCCC
CCCCCCCCCCCGCAGAAGCAGAAACAACAATACAAGATTTATAAAAACAC
GGAGCGAGCGTTGGGATCCGATCTTAATTGTAAAGTAAAATATGCCCCAA
GCTAAGCTAACTCAGTCGAGGTCTACGTTATGTGTTATGGTCTATTAATA
GCGTCCTACTGTGCCTCCCCCCGCCCCCATAAAAAAACCATGATTTCAAA
AACATAGAGCGAGCGTTGGGGTCCCACCTTTCAAGAGGGAAGATGGTCCA
AGCTGTTGAACACACCTATGTTAAACACACCTATGGAGGCTGGCTCACTT
GTTACGTATGATGCTATGGTGTCTCATCACGTATGATGTTATATGGTTAT
GGTATCGTACAGGACACGAGTCTTTGTCCTGATGTAGATCCTGGTGATAT
ATCTTTGCTGCGTTTTTATGAGCCAAAAATATTAAAAGTTATTTTCCTAC
CGCATACTGGTACTTTTATTGTATCTGTTCTCTTGATTGAGACTTTCTGT
TCGATTGTTTGGTCAGTTTTACGTATTATAGTACATCCATACTACTGTAC
CTTTGTCTGATTGTTGTGAAATGGCTGCTCAGTACAACAAACAGCCCCCC
CCCCCCCCCCGAAATACAAACGCGGAATTTACCTGTGTGCTGTAGGGGGG
GCAACGTGTCGGAGATGTGGAACTCCCCCCTTGGGCTCGCAACCCTAGAG
ATTTCGTGCGGAAGATGCGTCGGGCCCTGGAAAGCCCCCACGTATCTCGC
CGCCTACACCTGTGGATCGATCTAATCTTCGGCTGCAAGCAGAGGGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9330:4617..6865-

>mRNA_S-dermatodea_contig9330.17379.1 ID=mRNA_S-dermatodea_contig9330.17379.1|Name=mRNA_S-dermatodea_contig9330.17379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig9330:4617..6865- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCAGGAGCTGATCCCGGAGTTCTACGCGGGGGATGGGTCTTTCCTCAC
CAACCGCGACGACCTGCAGCTGGGGGTGACGCAGCCTCAGGAGCTGATCC
CGGAGTTCTACGCGGGGGATGGGTCTTTCCTCACCAACCGCGACGACCTG
CAGCTGGGGGTGACGCAGGGGGGGCAACGTGTCGGAGATGTGGAACTCCC
CCCTTGGGCTCGCAACCCTAGAGATTTCGTGCGGAAGATGCGTCGGGCCC
TGGAAAGCCCCCACGTATCTCGCCGCCTACACCTGTGGATCGATCTAATC
TTCGGCTGCAAGCAGAGGGGGGGGGGGCAACGTGTCGGAGATGTGGAACT
CCCCCCTTGGGCTCGCAACCCTAGAGATTTCGTGCGGAAGATGCGTCGGG
CCCTGGAAAGCCCCCACGTATCTCGCCGCCTACACCTGTGGATCGATCTA
ATCTTCGGCTGCAAGCAGAGGGGG
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