mRNA_S-dermatodea_contig9280.17344.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9280.17344.1
Unique NamemRNA_S-dermatodea_contig9280.17344.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9280.17344.1 vs. uniprot
Match: A0A6H5KE74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE74_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.980e-10
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:    2 VMATVSSKVDQAVQSLDETIHDLFGGQPEAVGVDNPH--------HDGWVELRGGEPSPASTLLAPTD 181
            V+ATVSSKVD+AVQSLDETI+D+FG   +    DN           DGWVELRGG    AS LL P +
Sbjct:  387 VLATVSSKVDKAVQSLDETINDIFGDNDDVDNDDNKAKANSSGGTRDGWVELRGGTAKSASALLHPEE 454
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BLAST of mRNA_S-dermatodea_contig9280.17344.1 vs. uniprot
Match: D8LHU4_ECTSI (Rap2 interacting protein x isoform 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.110e-8
Identity = 35/68 (51.47%), Postives = 39/68 (57.35%), Query Frame = 2 
Query:    2 VMATVSSKVDQAVQSLDETIHDLFGGQPEAVGVDNPH--------HDGWVELRGGEPSPASTLLAPTD 181
            V+ATVSSKVD+AVQSLDETI D+FG                     DGWVELRGG    AS LL P +
Sbjct:  362 VLATVSSKVDKAVQSLDETIQDIFGDDXXXXXXXXXXXXXXXGGTRDGWVELRGGTAKSASALLHPEE 429
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9280.17344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE74_9PHAE1.980e-1054.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHU4_ECTSI2.110e-851.47Rap2 interacting protein x isoform 3 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9280contigS-dermatodea_contig9280:6945..8338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.6014373-CDS-S-dermatodea_contig9280:6944..69781622925398.6014373-CDS-S-dermatodea_contig9280:6944..6978Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9280 6945..6978 +
1694079906.8798618-CDS-S-dermatodea_contig9280:6944..69781694079906.8798618-CDS-S-dermatodea_contig9280:6944..6978Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9280 6945..6978 +
1622925398.6159744-CDS-S-dermatodea_contig9280:8051..83381622925398.6159744-CDS-S-dermatodea_contig9280:8051..8338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9280 8052..8338 +
1694079906.8880494-CDS-S-dermatodea_contig9280:8051..83381694079906.8880494-CDS-S-dermatodea_contig9280:8051..8338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9280 8052..8338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9280.17344.1prot_S-dermatodea_contig9280.17344.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9280 6945..8338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9280.17344.1

>prot_S-dermatodea_contig9280.17344.1 ID=prot_S-dermatodea_contig9280.17344.1|Name=mRNA_S-dermatodea_contig9280.17344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=107bp
RDGHRQLEGRPGRPIPRRDHPRPLRRPAGSRRRRQSPPRWLGRTKGGGTI
PGVNPVGPHRQDGSRAKVGRQKPAVWPKHVSRRRRCTNRTKGGRCSWGRR
GGGCGG*
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mRNA from alignment at S-dermatodea_contig9280:6945..8338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9280.17344.1 ID=mRNA_S-dermatodea_contig9280.17344.1|Name=mRNA_S-dermatodea_contig9280.17344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1394bp|location=Sequence derived from alignment at S-dermatodea_contig9280:6945..8338+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGATGGCCACCGTCAGCTCGAAGGTCGACCAGGTGATGGGTCATTTAC
GCGTGTATATTGTATCGTTATATTTTTAATACTATGGTACTGTAATATCT
TATCTACGTGTTACCTTGGAGTAATATAGCACGCGGGCAGAATCGTGACC
GACGGTTCGCCAGGGTACGTTCTGCTGAGCTAAGTATTGCGCTTGGGGAG
TCGCCTGGACCATGTTCTACGAGGGATATTTTTTTTCGGGCTGCCGAAGA
AATCATGGCAGTTTTAGTGGACAACTATTAATAAGTCCACTCGGGTCCTG
TCCCTGTGAGTCACGGGTTTCATGTACACTTTATGTGTTATTTTTCTTTA
TAAAAAATGTACTGGTAACTGCCAAGGGACCATGACAGATCAGACCCACT
GCTGTGATATTTAGAAACTTGTGAAATCAAGTCAAGGTTGAAGGAGTGAG
TGCTGCTGTTCCTTGGTTTGTTTGTTTCGGTTCGTTTTATGGAGAGGTTC
GCGGTGTCGTTTGGGACGCGCTTCCGGGTTCCGAGAAGCAAGCCCTACAG
TGTACGAGTAGTGCTGGTAGTGTGCTGGCTGACGTGCTCGTTTTTGGGCC
ATGCGAAAGCGGCGCGCGAACTCGGTTTAGAATCGGTTCTGTCCGCGGCC
TCGGCCGTGCCCGATGGAAGCGCTTCACCTCCTACCCAAGCTGTTGGCGA
CCATCAGCCTTTCACCTTGATTATCCGATAAAGACGGACGGAGGCACGTT
TCCATCGGGGACGATGAACTGCCAAATATGCGGGTCTATCGTTCGAGCGA
GGCGTGCCACGCAAAAACAGAACAAATAACAATCTCCCCTTTAATTCAAA
ACCATTACGAATGTTTTGTTTTTCAAGGAATGACACACTGGTGCTCGCTA
ACCTCCTTCGTCATGACGATTACACCCGTCCTAAGGTGCATACAATATAC
AACGGTGAAAAATTCATACGTGGAACCCCCTAAAAAGCAAACCGATATCA
AAGGCGTACCGCGAGCGCTGGGGTCCCCTTTCCCTTGCTCCCCTCGCCGT
TCAAAATCCCCGTCGCGCGTATCGTATCTCACGATCACCGATGACACATC
CCTGCAGGCCGTCCAATCCCTCGACGAGACCATCCACGACCTCTTCGGCG
GCCAGCCGGAAGCCGTCGGCGTCGACAATCCCCACCACGATGGCTGGGTC
GAACTAAGGGGGGGGGAACCATCCCCGGCGTCAACCCTGTTGGCCCCCAC
AGACAGGACGGATCAAGAGCAAAGGTGGGACGGCAAAAGCCGGCCGTTTG
GCCTAAGCACGTCTCCAGGCGTCGTCGATGCACGAACAGGACTAAGGGCG
GGAGGTGCTCTTGGGGGCGGCGGGGGGGGGGGTGCGGAGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9280:6945..8338+

>mRNA_S-dermatodea_contig9280.17344.1 ID=mRNA_S-dermatodea_contig9280.17344.1|Name=mRNA_S-dermatodea_contig9280.17344.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at S-dermatodea_contig9280:6945..8338+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGATGGCCACCGTCAGCTCGAAGGTCGACCAGCGTGATGGCCACCGTC
AGCTCGAAGGTCGACCAGGCCGTCCAATCCCTCGACGAGACCATCCACGA
CCTCTTCGGCGGCCAGCCGGAAGCCGTCGGCGTCGACAATCCCCACCACG
ATGGCTGGGTCGAACTAAGGGGGGGGGAACCATCCCCGGCGTCAACCCTG
TTGGCCCCCACAGACAGGACGGATCAAGAGCAAAGGTGGGACGGCAAAAG
CCGGCCGTTTGGCCTAAGCACGTCTCCAGGCGTCGTCGATGCACGAACAG
GACTAAGGGCGGGAGGTGCTCTTGGGGGCGGCGGGGGGGGGGGTGCGGAG
GGTGAGCCGTCCAATCCCTCGACGAGACCATCCACGACCTCTTCGGCGGC
CAGCCGGAAGCCGTCGGCGTCGACAATCCCCACCACGATGGCTGGGTCGA
ACTAAGGGGGGGGGAACCATCCCCGGCGTCAACCCTGTTGGCCCCCACAG
ACAGGACGGATCAAGAGCAAAGGTGGGACGGCAAAAGCCGGCCGTTTGGC
CTAAGCACGTCTCCAGGCGTCGTCGATGCACGAACAGGACTAAGGGCGGG
AGGTGCTCTTGGGGGCGGCGGGGGGGGGGGTGCGGAGGGTGA
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