mRNA_S-dermatodea_contig92751.17336.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92751.17336.1
Unique NamemRNA_S-dermatodea_contig92751.17336.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A7S2WVK6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVK6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.060e-12
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   16 HR-MPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
            HR +PPP GAP GG W  EKYCG +T+++  F+F CVCCCPCD++++
Sbjct:  131 HRGIPPPQGAPPGGVWKIEKYCGCVTFMIA-FIFPCVCCCPCDEQRI 176          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A6H5JEI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI3_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.010e-11
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   31 PPGAPAGGQWVQEKYCGVITWLVGIFLF----WCVCCCPCDDRQV 153
            PP AP GGQW QE+YCG+ITWLV +F+      C+ CCPCD+R V
Sbjct:  108 PPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTV 152          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: D8LRX4_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.170e-11
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 VVLMDHRMPPPPGAPAGGQWVQEKYCGVITWLVGIFLF----WCVCCCPCDDRQVS 156
            +V+ +     PP AP GGQW QE+YCG+ITWLV +F+      C+ CCPCD+R  +
Sbjct:  109 IVVQEGNRNIPPNAPDGGQWKQERYCGLITWLVALFVVPFIGCCMPCCPCDERTAA 164          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A813G7E1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G7E1_POLGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-10
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   22 MPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
            +P P GAP GG W  EKYCG+IT L+ + +   VCCCPCD+R V
Sbjct:   12 VPVPYGAPPGGYWATEKYCGIITILIALCICPFVCCCPCDERDV 55          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A7S0SD72_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SD72_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 2.910e-10
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   52 GQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
            G +V+EKYCGVIT L+G+F+F  VCCCPCD RQV
Sbjct:   67 GYYVEEKYCGVITILIGVFIFPFVCCCPCDSRQV 100          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A813IVK9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVK9_POLGL)

HSP 1 Score: 60.8 bits (146), Expect = 1.450e-9
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   22 MPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
            +P P GAP GG W  EKYCG+IT L+ + +   VCCCPCD+R V
Sbjct:  165 VPVPYGAPPGGYWATEKYCGIITILIALCICPFVCCCPCDERDV 208          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A7S1MA60_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MA60_NEODS)

HSP 1 Score: 58.2 bits (139), Expect = 3.220e-9
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   31 PPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
            PPGAP GG W +E YCG  +  VG+ LF C+C CP D RQV
Sbjct:   92 PPGAPPGGHWAEESYCGAGSICVGVCLFPCICFCPFDKRQV 132          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A2R5GVZ4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVZ4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.720e-9
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 VVLMDHRMPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQVS 156
            VV +D R+      P+   +  EKYCGVI+ ++G  +F C+CCCPCD+RQV+
Sbjct:    8 VVAVDPRIAAAGMDPSKVTYETEKYCGVISLVIGFCIFPCICCCPCDERQVA 59          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: D8LMJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.800e-7
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1
Query:   34 PGAPAGGQWVQEKYCGVITWLVGIF-LFWCVCCCPCDDRQV 153
            PGAP  G WV+E+YCG+ TWL+ +   F C   CPCD R V
Sbjct:   45 PGAPTTGMWVEERYCGLTTWLITVVGSFPCSYFCPCDRRTV 85          
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: D7FTZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ4_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.610e-6
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 1
Query:   28 PPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCC-----PCDDRQV 153
            PPPGAPAGG+WVQE+YCG     V +     +CCC     P D R V
Sbjct:   34 PPPGAPAGGEWVQERYCGCCESCVKL-----ICCCLFCYTPFDSRMV 75          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S2WVK6_9STRA7.060e-1257.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JEI3_9PHAE3.010e-1160.00WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LRX4_ECTSI3.170e-1148.21WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A813G7E1_POLGL2.060e-1056.82Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0SD72_9CHLO2.910e-1070.59Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A813IVK9_POLGL1.450e-956.82Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S1MA60_NEODS3.220e-958.54Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A2R5GVZ4_9STRA4.720e-946.15Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
D8LMJ4_ECTSI7.800e-753.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTZ4_ECTSI2.610e-651.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92751contigS-dermatodea_contig92751:91..252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size162
Cds size153
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.1171815-UTR-S-dermatodea_contig92751:90..991622925398.1171815-UTR-S-dermatodea_contig92751:90..99Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92751 91..99 +
1694079906.5226655-UTR-S-dermatodea_contig92751:90..991694079906.5226655-UTR-S-dermatodea_contig92751:90..99Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92751 91..99 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925398.1275318-CDS-S-dermatodea_contig92751:99..2521622925398.1275318-CDS-S-dermatodea_contig92751:99..252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92751 100..252 +
1694079906.5334105-CDS-S-dermatodea_contig92751:99..2521694079906.5334105-CDS-S-dermatodea_contig92751:99..252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92751 100..252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92751.17336.1prot_S-dermatodea_contig92751.17336.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92751 100..252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92751.17336.1

>prot_S-dermatodea_contig92751.17336.1 ID=prot_S-dermatodea_contig92751.17336.1|Name=mRNA_S-dermatodea_contig92751.17336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp
MDHRMPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQVSA
*
back to top

mRNA from alignment at S-dermatodea_contig92751:91..252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92751.17336.1 ID=mRNA_S-dermatodea_contig92751.17336.1|Name=mRNA_S-dermatodea_contig92751.17336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig92751:91..252+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGTGCTGATGGATCACAGAATGCCCCCGCCCCCGGGAGCTCCTGCCGG CGGACAGTGGGTCCAGGAGAAGTACTGCGGGGTGATAACGTGGCTCGTTG GCATATTCTTGTTTTGGTGTGTCTGCTGCTGCCCGTGCGATGACCGCCAG GTGAGTGCCTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig92751:91..252+

>mRNA_S-dermatodea_contig92751.17336.1 ID=mRNA_S-dermatodea_contig92751.17336.1|Name=mRNA_S-dermatodea_contig92751.17336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig92751:91..252+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATCACAGAATGCCCCCGCCCCCGGGAGCTCCTGCCGGCGGACAGTG
GGTCCAGGAGAAGTACTGCGGGGTGATAACGTGGCTCGTTGGCATATTCT
TGTTTTGGTGTGTCTGCTGCTGCCCGTGCGATGACCGCCAGGTGAGTGCC
TGAATGGATCACAGAATGCCCCCGCCCCCGGGAGCTCCTGCCGGCGGACA
GTGGGTCCAGGAGAAGTACTGCGGGGTGATAACGTGGCTCGTTGGCATAT
TCTTGTTTTGGTGTGTCTGCTGCTGCCCGTGCGATGACCGCCAGGTGAGT
GCCTGA
back to top