mRNA_S-dermatodea_contig92751.17336.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A7S2WVK6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVK6_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 7.060e-12 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1
Query: 16 HR-MPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
HR +PPP GAP GG W EKYCG +T+++ F+F CVCCCPCD++++
Sbjct: 131 HRGIPPPQGAPPGGVWKIEKYCGCVTFMIA-FIFPCVCCCPCDEQRI 176
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A6H5JEI3_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEI3_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 3.010e-11 Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 31 PPGAPAGGQWVQEKYCGVITWLVGIFLF----WCVCCCPCDDRQV 153
PP AP GGQW QE+YCG+ITWLV +F+ C+ CCPCD+R V
Sbjct: 108 PPNAPDGGQWRQERYCGLITWLVALFVVPFIGCCMPCCPCDERTV 152
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: D8LRX4_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX4_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 3.170e-11 Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 VVLMDHRMPPPPGAPAGGQWVQEKYCGVITWLVGIFLF----WCVCCCPCDDRQVS 156
+V+ + PP AP GGQW QE+YCG+ITWLV +F+ C+ CCPCD+R +
Sbjct: 109 IVVQEGNRNIPPNAPDGGQWKQERYCGLITWLVALFVVPFIGCCMPCCPCDERTAA 164
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A813G7E1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G7E1_POLGL) HSP 1 Score: 60.8 bits (146), Expect = 2.060e-10 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 22 MPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
+P P GAP GG W EKYCG+IT L+ + + VCCCPCD+R V
Sbjct: 12 VPVPYGAPPGGYWATEKYCGIITILIALCICPFVCCCPCDERDV 55
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A7S0SD72_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SD72_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 2.910e-10 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 52 GQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
G +V+EKYCGVIT L+G+F+F VCCCPCD RQV
Sbjct: 67 GYYVEEKYCGVITILIGVFIFPFVCCCPCDSRQV 100
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A813IVK9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IVK9_POLGL) HSP 1 Score: 60.8 bits (146), Expect = 1.450e-9 Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query: 22 MPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
+P P GAP GG W EKYCG+IT L+ + + VCCCPCD+R V
Sbjct: 165 VPVPYGAPPGGYWATEKYCGIITILIALCICPFVCCCPCDERDV 208
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A7S1MA60_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MA60_NEODS) HSP 1 Score: 58.2 bits (139), Expect = 3.220e-9 Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query: 31 PPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQV 153
PPGAP GG W +E YCG + VG+ LF C+C CP D RQV
Sbjct: 92 PPGAPPGGHWAEESYCGAGSICVGVCLFPCICFCPFDKRQV 132
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: A0A2R5GVZ4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVZ4_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 4.720e-9 Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 1 VVLMDHRMPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQVS 156
VV +D R+ P+ + EKYCGVI+ ++G +F C+CCCPCD+RQV+
Sbjct: 8 VVAVDPRIAAAGMDPSKVTYETEKYCGVISLVIGFCIFPCICCCPCDERQVA 59
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: D8LMJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMJ4_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 7.800e-7 Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1
Query: 34 PGAPAGGQWVQEKYCGVITWLVGIF-LFWCVCCCPCDDRQV 153
PGAP G WV+E+YCG+ TWL+ + F C CPCD R V
Sbjct: 45 PGAPTTGMWVEERYCGLTTWLITVVGSFPCSYFCPCDRRTV 85
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Match: D7FTZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ4_ECTSI) HSP 1 Score: 49.3 bits (116), Expect = 2.610e-6 Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 1
Query: 28 PPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCC-----PCDDRQV 153
PPPGAPAGG+WVQE+YCG V + +CCC P D R V
Sbjct: 34 PPPGAPAGGEWVQERYCGCCESCVKL-----ICCCLFCYTPFDSRMV 75 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92751.17336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig92751.17336.1 >prot_S-dermatodea_contig92751.17336.1 ID=prot_S-dermatodea_contig92751.17336.1|Name=mRNA_S-dermatodea_contig92751.17336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp MDHRMPPPPGAPAGGQWVQEKYCGVITWLVGIFLFWCVCCCPCDDRQVSAback to top mRNA from alignment at S-dermatodea_contig92751:91..252+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig92751.17336.1 ID=mRNA_S-dermatodea_contig92751.17336.1|Name=mRNA_S-dermatodea_contig92751.17336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig92751:91..252+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig92751:91..252+ >mRNA_S-dermatodea_contig92751.17336.1 ID=mRNA_S-dermatodea_contig92751.17336.1|Name=mRNA_S-dermatodea_contig92751.17336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig92751:91..252+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |