mRNA_S-dermatodea_contig92483.17306.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92483.17306.1
Unique NamemRNA_S-dermatodea_contig92483.17306.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: D8LDW9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.520e-36
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YYDN+IFHRVIK+FMVQGGDPTGTGRGGES +GGKFEDEIRRDLKHTGAG+VSMAN+GPN+NGSQ
Sbjct:   42 YYDNTIFHRVIKDFMVQGGDPTGTGRGGESSFGGKFEDEIRRDLKHTGAGVVSMANSGPNTNGSQ 106
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A0A4D9D128_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D128_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.240e-35
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YY+ +IFHR+IK+FM+QGGDPTGTGRGGES YGGKFEDEI RDLKHTGAGIVSMANAGPN+NGSQ
Sbjct:   43 YYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGIVSMANAGPNTNGSQ 107
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A0A7R9WXA2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WXA2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.240e-34
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YYDN++FHRVI++FM+QGGDPTGTGRGGES YGGKFEDEI R+LKHTGAG+VSMANAGPN+NGSQ
Sbjct:   47 YYDNTVFHRVIRDFMIQGGDPTGTGRGGESIYGGKFEDEITRNLKHTGAGVVSMANAGPNTNGSQ 111
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A0A061QI50_9CHLO (Peptidyl-prolyl cis-trans isomerase (Fragment) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QI50_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 3.640e-34
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YYD ++FHR+IK+FMVQGGDPTGTGRGGES YGGKFEDEI RDLKHTGAGI+SMAN+GPN+NGSQ
Sbjct:   70 YYDGTVFHRIIKDFMVQGGDPTGTGRGGESVYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQ 134
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: W7U6L7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6L7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 5.180e-34
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YY+ +IFHR+IK+FM+QGGDPTGTGRGGES YGGKFEDEI RDLKHTGAG+VSMANAGPN+NGSQ
Sbjct:   76 YYNGTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITRDLKHTGAGVVSMANAGPNTNGSQ 140
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A0A7S1Y7R9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7R9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.600e-34
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YYD +IFHR+I++FMVQGGDPTGTGRGGES YGGKFEDEI R+LKHTGAGIVSMANAGPN+NGSQ
Sbjct:   46 YYDGTIFHRIIRDFMVQGGDPTGTGRGGESIYGGKFEDEITRNLKHTGAGIVSMANAGPNTNGSQ 110
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A9RJF1_PHYPA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RJF1_PHYPA)

HSP 1 Score: 122 bits (305), Expect = 6.890e-34
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YY+N +FHRVIK FMVQGGDPTGTGRGGES YG KFEDEIRRDLKHTGAGI+SMAN+GPN+NGSQ
Sbjct:   42 YYNNVLFHRVIKNFMVQGGDPTGTGRGGESIYGSKFEDEIRRDLKHTGAGILSMANSGPNTNGSQ 106
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A0A7S4IWA7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IWA7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.720e-34
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YYD +IFHR+IK+FMVQGGDPTGTGRGGES YGGKFEDEI R+LKHTGAG+VSMAN+GPN+NGSQ
Sbjct:   44 YYDGTIFHRIIKDFMVQGGDPTGTGRGGESVYGGKFEDEITRNLKHTGAGVVSMANSGPNTNGSQ 108
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: K3WIX2_GLOUD (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WIX2_GLOUD)

HSP 1 Score: 122 bits (305), Expect = 7.950e-34
Identity = 53/65 (81.54%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YY+N+IFHR+IK+FM+QGGDPTGTGRGGES YGGKFEDEI ++LKHTGAG++SMANAGPN+NGSQ
Sbjct:   46 YYNNTIFHRIIKDFMIQGGDPTGTGRGGESVYGGKFEDEISKELKHTGAGVLSMANAGPNTNGSQ 110
[Close]
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Match: A0A024UVT2_9STRA (Peptidyl-prolyl cis-trans isomerase n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UVT2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.470e-34
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAGIVSMANAGPNSNGSQ 195
            YYDN+IFHR+IK+FM+QGGDPTGTGRGGES YGGKFEDEI   LKHTGAG++SMANAGPN+NGSQ
Sbjct:   38 YYDNTIFHRIIKDFMIQGGDPTGTGRGGESIYGGKFEDEITPQLKHTGAGVLSMANAGPNTNGSQ 102
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92483.17306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW9_ECTSI3.520e-3689.23Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A4D9D128_9STRA8.240e-3586.15Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A7R9WXA2_9STRA1.240e-3484.62Peptidyl-prolyl cis-trans isomerase n=1 Tax=Craspe... [more]
A0A061QI50_9CHLO3.640e-3484.62Peptidyl-prolyl cis-trans isomerase (Fragment) n=2... [more]
W7U6L7_9STRA5.180e-3484.62Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A7S1Y7R9_9STRA5.600e-3486.15Peptidyl-prolyl cis-trans isomerase n=1 Tax=Gramma... [more]
A9RJF1_PHYPA6.890e-3486.15Peptidyl-prolyl cis-trans isomerase n=1 Tax=Physco... [more]
A0A7S4IWA7_9STRA7.720e-3484.62Peptidyl-prolyl cis-trans isomerase n=1 Tax=Odonte... [more]
K3WIX2_GLOUD7.950e-3481.54Peptidyl-prolyl cis-trans isomerase n=2 Tax=Pythia... [more]
A0A024UVT2_9STRA8.470e-3483.08Peptidyl-prolyl cis-trans isomerase n=11 Tax=Sapro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92483contigS-dermatodea_contig92483:190..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.2e-28
Seed eggNOG ortholog2880.D8LDW9
Preferred namePPIL1
KEGG koko:K01802,ko:K12733
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006457,GO:0006464,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016018,GO:0016070,GO:0016071,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0019904,GO:0031974,GO:0031981,GO:0032991,GO:0033218,GO:0034641,GO:0036211,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097718,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990904
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0881@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925396.2484322-CDS-S-dermatodea_contig92483:189..3931622925396.2484322-CDS-S-dermatodea_contig92483:189..393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92483 190..393 +
1694079905.3090901-CDS-S-dermatodea_contig92483:189..3931694079905.3090901-CDS-S-dermatodea_contig92483:189..393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92483 190..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92483.17306.1prot_S-dermatodea_contig92483.17306.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92483 190..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92483.17306.1

>prot_S-dermatodea_contig92483.17306.1 ID=prot_S-dermatodea_contig92483.17306.1|Name=mRNA_S-dermatodea_contig92483.17306.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
YYDNSIFHRVIKEFMVQGGDPTGTGRGGESCYGGKFEDEIRRDLKHTGAG
IVSMANAGPNSNGSQVS*
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mRNA from alignment at S-dermatodea_contig92483:190..393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92483.17306.1 ID=mRNA_S-dermatodea_contig92483.17306.1|Name=mRNA_S-dermatodea_contig92483.17306.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig92483:190..393+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACTACGACAACTCTATCTTCCACCGCGTCATAAAGGAGTTCATGGTGCA
GGGAGGCGACCCGACGGGAACGGGGCGGGGGGGCGAGTCGTGCTACGGTG
GGAAATTCGAGGACGAGATCCGGCGCGATCTAAAGCACACGGGCGCCGGG
ATCGTCTCCATGGCGAACGCGGGACCTAACTCGAACGGCTCGCAGGTGAG
TTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig92483:190..393+

>mRNA_S-dermatodea_contig92483.17306.1 ID=mRNA_S-dermatodea_contig92483.17306.1|Name=mRNA_S-dermatodea_contig92483.17306.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig92483:190..393+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACTACGACAACTCTATCTTCCACCGCGTCATAAAGGAGTTCATGGTGCA
GGGAGGCGACCCGACGGGAACGGGGCGGGGGGGCGAGTCGTGCTACGGTG
GGAAATTCGAGGACGAGATCCGGCGCGATCTAAAGCACACGGGCGCCGGG
ATCGTCTCCATGGCGAACGCGGGACCTAACTCGAACGGCTCGCAGGTGAG
TTAATACTACGACAACTCTATCTTCCACCGCGTCATAAAGGAGTTCATGG
TGCAGGGAGGCGACCCGACGGGAACGGGGCGGGGGGGCGAGTCGTGCTAC
GGTGGGAAATTCGAGGACGAGATCCGGCGCGATCTAAAGCACACGGGCGC
CGGGATCGTCTCCATGGCGAACGCGGGACCTAACTCGAACGGCTCGCAGG
TGAGTTAA
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