mRNA_S-dermatodea_contig9225.17291.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9225.17291.1
Unique NamemRNA_S-dermatodea_contig9225.17291.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Match: A0A6H5JRA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.250e-11
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  117 SMELLRADTIPSGSDIWVEDEE-DVWMLATVARQENTLLTVRRKSTGQEMEIDL 275
            S +L+RA+TI  GSDIW +DEE +VW +A V  QENT+LTVR KSTG+E +IDL
Sbjct:    9 SGDLMRAETIAVGSDIWTDDEEGEVWTIAEVVHQENTMLTVRYKSTGEEHKIDL 62
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BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Match: D8LMS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.260e-11
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3 
Query:  117 SMELLRADTIPSGSDIWVEDEE-DVWMLATVARQENTLLTVRRKSTGQEMEIDL 275
            S +L+RA+TI  GSDIW +DEE +VW +A V  QENT+LTVR KSTG+E +IDL
Sbjct:    9 SGDLMRAETIAVGSDIWTDDEEGEVWTIAEVVHQENTMLTVRYKSTGEEHKIDL 62
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BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Match: D7G4Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.350e-11
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:   75 MPPNI--QRGITSQ-SSSMELLRADTIPSGSDIWVEDEEDVWMLATVARQENTLLTVRRKSTGQEMEIDL 275
            MPPN   +RGI  Q S+S  L+ A+ I +G ++WVED + VW LA++  Q+NT+L VRRK TG  ++IDL
Sbjct:    1 MPPNAMPRRGIGMQRSASSRLMEAERISTGEELWVEDPKVVWALASLVSQQNTILKVRRKDTGDLVDIDL 70
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BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Match: D8LHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.520e-10
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:   78 PPNIQRGITSQSSSMELLRADTIPSGSDIWVEDEEDVWMLATVARQENTLLTVRRKSTGQEMEIDL 275
            PP +     S+S S  ++RA       D WV+DE +VW+LA V RQ+NTLLTVRRKSTG+++E+DL
Sbjct:    4 PPTM---ALSRSLSTRVMRARCFTG--DTWVDDEVEVWILAEVVRQDNTLLTVRRKSTGEDIEVDL 64
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BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Match: D7FPQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.350e-9
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:  144 IPSGSDIWVEDEED----VWMLATVARQENTLLTVRRKSTGQEMEIDL 275
            +PSG++IW EDE D    VWMLA V RQ+NT+LTVR+K TG+E+ IDL
Sbjct:    1 MPSGTEIWAEDEADGGDEVWMLAEVLRQDNTMLTVRKKRTGEELAIDL 48
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BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Match: D8LMW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 3 
Query:  117 SMELLRADTIPSGSDIWVEDEEDVWMLATVARQENTLLTVRRKSTGQEMEIDL 275
            S +  RAD  P GS +W ED + +W+L  V  Q+NTLL VR K+TG+  EIDL
Sbjct:    2 SKKAFRADKRPDGSLVWTEDPDKMWVLVEVLSQDNTLLRVRNKATGETQEIDL 54
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9225.17291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRA1_9PHAE1.250e-1162.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS5_ECTSI1.260e-1162.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Q7_ECTSI2.350e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHQ0_ECTSI1.520e-1051.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPQ0_ECTSI1.350e-962.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMW4_ECTSI4.180e-850.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9225contigS-dermatodea_contig9225:4684..4958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1e-09
Seed eggNOG ortholog2880.D8LMS5
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.2119813-UTR-S-dermatodea_contig9225:4683..47571622925395.2119813-UTR-S-dermatodea_contig9225:4683..4757Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9225 4684..4757 +
1694079904.6519415-UTR-S-dermatodea_contig9225:4683..47571694079904.6519415-UTR-S-dermatodea_contig9225:4683..4757Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9225 4684..4757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925395.2220323-CDS-S-dermatodea_contig9225:4757..49581622925395.2220323-CDS-S-dermatodea_contig9225:4757..4958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9225 4758..4958 +
1694079904.6651683-CDS-S-dermatodea_contig9225:4757..49581694079904.6651683-CDS-S-dermatodea_contig9225:4757..4958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9225 4758..4958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9225.17291.1prot_S-dermatodea_contig9225.17291.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9225 4758..4958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9225.17291.1

>prot_S-dermatodea_contig9225.17291.1 ID=prot_S-dermatodea_contig9225.17291.1|Name=mRNA_S-dermatodea_contig9225.17291.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
MPPNIQRGITSQSSSMELLRADTIPSGSDIWVEDEEDVWMLATVARQENT
LLTVRRKSTGQEMEIDL
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mRNA from alignment at S-dermatodea_contig9225:4684..4958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9225.17291.1 ID=mRNA_S-dermatodea_contig9225.17291.1|Name=mRNA_S-dermatodea_contig9225.17291.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=275bp|location=Sequence derived from alignment at S-dermatodea_contig9225:4684..4958+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCCAGGGTCCGCTGGGGAACGAACACGCGCAACACAAGCAACGTTTT
TATTGTGCTGGTAAGTGAGGGACCATGCCGCCCAACATCCAGAGAGGGAT
CACTTCCCAGTCGAGCTCGATGGAGCTGCTGAGGGCCGACACAATCCCTT
CGGGGAGCGACATCTGGGTTGAGGATGAGGAGGATGTGTGGATGCTGGCC
ACGGTGGCGCGGCAGGAGAATACGCTGCTCACGGTCCGACGGAAAAGCAC
GGGGCAGGAGATGGAGATCGACTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9225:4684..4958+

>mRNA_S-dermatodea_contig9225.17291.1 ID=mRNA_S-dermatodea_contig9225.17291.1|Name=mRNA_S-dermatodea_contig9225.17291.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig9225:4684..4958+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCCCAACATCCAGAGAGGGATCACTTCCCAGTCGAGCTCGATGGA
GCTGCTGAGGGCCGACACAATCCCTTCGGGGAGCGACATCTGGGTTGAGG
ATGAGGAGGATGTGTGGATGCTGGCCACGGTGGCGCGGCAGGAGAATACG
CTGCTCACGGTCCGACGGAAAAGCACGGGGCAGGAGATGGAGATCGACTT
GATGCCGCCCAACATCCAGAGAGGGATCACTTCCCAGTCGAGCTCGATGG
AGCTGCTGAGGGCCGACACAATCCCTTCGGGGAGCGACATCTGGGTTGAG
GATGAGGAGGATGTGTGGATGCTGGCCACGGTGGCGCGGCAGGAGAATAC
GCTGCTCACGGTCCGACGGAAAAGCACGGGGCAGGAGATGGAGATCGACT
TG
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