mRNA_S-dermatodea_contig9220.17285.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE) HSP 1 Score: 372 bits (955), Expect = 8.410e-123 Identity = 216/357 (60.50%), Postives = 235/357 (65.83%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATA----TAAEASSPRGGGGGDTEGLSD-----EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRD------HG-----------------------DGG------------AADRVSASARKTSCEGED---GGGEEGLSPEALMKRG------RIRLSDPDGFLFSNSVISSVFCELDGWQRDP*DGCQVGGVVT 894
SGLP QT QWEHTLSEAI+TGAAH+SVYDLQVEAGT FGRW++PGE+PLPED TCADMYRTASRVLG AG+ HYEISNYARPGFQSRHNRAYWENVPFLAFGNGAAS+VDG RFSRPR LPEY WV EL GWA+AT TA E P GGG GD G+ + EALERDAL DDVMLGFRLKEGLDL +ASKYG AAR VEEGA EG+ GWV+RD HG DGG AA V R + G GGG E + E G +RLSDPDGFLFSNSVISSVFCELDGW++ D Q GGV +
Sbjct: 181 SGLPKQTVEQWEHTLSEAIATGAAHISVYDLQVEAGTPFGRWFSPGEAPLPEDETCADMYRTASRVLGRAGYGHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVGELEEEGWAKATGAPRRTACEEVLPGGGGMGDGGGVEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRDAAATGSHGGDVGAGGEKSGRNVDRVDDDFVYDGGRRSSSSTLGAGSAAGNVGDHGRTSPGRGLPDYRGGGHEDRTAEVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKKC--DQEQDGGVAS 535
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI) HSP 1 Score: 365 bits (937), Expect = 2.260e-119 Identity = 210/354 (59.32%), Postives = 230/354 (64.97%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATAT----AAEASSPRGGGGGDTEGLSD-----EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDH----------------------------------------GDGGAADRVSASARKTSCEG---EDGGGEEGLSPEALM------KRGRIRLSDPDGFLFSNSVISSVFCELDGWQRDP*DGCQVGGV 888
SGLP QT QWEHTLSEAI+TGAAH+SVYDLQVEAGT FGRW++PGE+PLPED TCADMYRTAS VLG AG++HYEISNYARPGFQSRHNRAYWENVPFLAFGNGAAS+VDG RFSRPR LPEY WV EL GW +AT A E P GGG GD G + EALERDAL DDVMLGFRLKEGLDL +ASKYG AAR VEEGA EG+ +GWV+RD G G AA V R + G + GG+E E + G +RLSDPDGFLFSNSVISSVFCELDGW+R D Q GGV
Sbjct: 240 SGLPKQTVEQWEHTLSEAIATGAAHISVYDLQVEAGTPFGRWFSPGEAPLPEDETCADMYRTASGVLGQAGYDHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGYRFSRPRGLPEYGQWVGELEEEGWDKATGAPRRAACEEVLPGGGGMGDGAGAEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRDTAARGSRGGDAGAGGEKGGRNVGRVDDDFVYDGGRGSSSTLGAGSAAGDVGDHGRTSPGRGFPDDRSGGQEDRRAEVASDGGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRC--DQEQDGGV 591
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A836CMJ4_9STRA (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ4_9STRA) HSP 1 Score: 233 bits (595), Expect = 2.790e-70 Identity = 139/281 (49.47%), Postives = 164/281 (58.36%), Query Frame = 1
Query: 4 GLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYA-PGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVG-WAEATATAAEASSPRGGGGGDTEGLSDEALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
GLPNQT QW HTLS A+ T AAH+SVYDLQVE GTAFGRW++ G +P PE+ A M+R AS VLGGA ++HYEISNYARPG QS HNRAYWEN +LAFGNGAAS+V RFSRPRRL EYE WV++L + WA AT GG D+E + E L MLG RL EG+DLD L + GA V GA EGV E GL A ++ GR+ L++P+G L SNSVIS +F EL
Sbjct: 186 GLPNQTRAQWRHTLSAAVDTRAAHISVYDLQVEDGTAFGRWFSGAGAAPFPEESEGAGMFRDASAVLGGAFYDHYEISNYARPGHQSAHNRAYWENRHYLAFGNGAASHVARARFSRPRRLQEYEAWVEQLESSNDWASAT----------GGEPMDSESAAIEGL---------MLGLRLSEGVDLDKLREEVGAEWVERVLRGAREGV----------------------------------EGGL---ARVEGGRLALTNPEGMLMSNSVISGIFAEL 410
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A8J6RHZ2_9CYAN (Heme chaperone HemW n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RHZ2_9CYAN) HSP 1 Score: 220 bits (560), Expect = 5.280e-65 Identity = 121/287 (42.16%), Postives = 162/287 (56.45%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWV--LRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEA--LMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
SGLP+QTS W+ +L +A++ H+S+YDLQVE TAFGR Y PG PLPED T A MYR AS +L GAG+EHYEISNYA+PG Q RHNR YWEN P+ AFG GAASY+ G RF+RPR+ EY WV +L+ G G+ D + + L + +MLG RL EGL L TLA ++G + + + +GWV + D+G E + P+ L GRI+L+DP+GFLFSN +++ +F +L+
Sbjct: 182 SGLPHQTSDHWQESLLKAVAIAPTHISIYDLQVEPVTAFGRQYQPGAKPLPEDETAAQMYRQASEILTGAGYEHYEISNYAQPGHQCRHNRVYWENRPYYAFGMGAASYLQGCRFTRPRKTREYYEWVQQLSEAG-----------------------GVLDCPQISASEVLLETLMLGLRLAEGLSLSTLAERFGEQTLSKIGKCLQPYYQQGWVEVVTDNG-------------------------EAIRPQIQKLSASGRIKLTDPEGFLFSNVILADLFSQLE 420
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A1U7ILW9_9CYAN (Heme chaperone HemW n=2 Tax=Phormidium ambiguum TaxID=71191 RepID=A0A1U7ILW9_9CYAN) HSP 1 Score: 219 bits (558), Expect = 9.960e-65 Identity = 119/283 (42.05%), Postives = 162/283 (57.24%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
SGLP QT QW+ TL +A+ H+SVYDL +E GTAFGR+Y PG PLP D T A MYR ++L +G+EHYEISNYA+PG Q RHNR YWEN P+ AFG GAASY++ +RF+RP++ EY WV +L A G G+ D + E+D L + +MLG RL EGL+L LA K+ + G +GWV +G +R+S S S E L GR++L+DP+GFLFSN++++++F +L+
Sbjct: 176 SGLPKQTIAQWQETLEKAVVINPTHISVYDLIIEDGTAFGRYYQPGSQPLPTDETTAQMYRLTQQILTNSGYEHYEISNYAQPGHQCRHNRVYWENRPYYAFGMGAASYLNRQRFTRPKKRREYYAWVKQLIADG-----------------------GIIDTPQVDEQDILLETLMLGLRLAEGLELAVLAEKFSQETLEKIWHGVQPYYQKGWVAIFATNG---ERISLS-----------------SNENLPIMGRLKLTDPEGFLFSNTILAALFSQLE 415
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A3C0N230_9CYAN (Heme chaperone HemW n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0N230_9CYAN) HSP 1 Score: 217 bits (552), Expect = 7.990e-64 Identity = 123/282 (43.62%), Postives = 154/282 (54.61%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
SGLP QT QW+ +L AIS H+S YDL VE TAFGR YAPG PLP D T A MYR A +VL AG+EHYEISNYA PG Q RHNR YWEN P+ FG GAASYVDGRRF+R R EY TWV +L G G+ D E E D L +++MLG RL EGL L TL ++G + + GWV + V + + + + + LM G++RLSDP+GFLFSN++++ +F +L
Sbjct: 180 SGLPYQTLDQWQASLEAAISIAPTHISCYDLIVEPVTAFGRQYAPGAKPLPTDETAAQMYRVAQQVLTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVDGRRFTRGRTRREYYTWVQQLIDAG-----------------------GVMDCPELSESDVLLENLMLGLRLAEGLSLSTLILQFGEKTLEQIWTSLQPYYRNGWV----------EIVGTDGKVIAVQND----------QKLMMTGQLRLSDPEGFLFSNTILADLFSQL 418
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: B4VWX2_9CYAN (Heme chaperone HemW n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VWX2_9CYAN) HSP 1 Score: 216 bits (549), Expect = 1.720e-63 Identity = 121/282 (42.91%), Postives = 149/282 (52.84%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSDEALER--DALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
SGLP QT QW+ +L+ AI H+S YDL +E TAFGR Y+PG SPLP D T A MYR A ++L AG+EHYEISNYA P Q RHNR YWEN PF FG GAASY+ RRF+RPR EY WV++ G G+ D L R D L + VMLG RL +GL L L K+G + V +GW+ DG D + S R S GRIRLSDP+GFLFSN++++ +F E+
Sbjct: 168 SGLPTQTLEQWQESLAAAIQLAPTHISCYDLTIEPVTAFGRQYSPGISPLPTDETTAQMYRLAQQLLTDAGYEHYEISNYALPTHQCRHNRVYWENRPFYGFGMGAASYIQARRFTRPRTRREYYAWVEQFIQAG-----------------------GVLDSPLSRTTDILLETVMLGLRLADGLSLSALREKFGETLIERIWRSLQPSVDKGWITIVTPDGSVIDMQAVSNRPIS--------------------GRIRLSDPNGFLFSNTILADIFKEI 406
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A367QS50_9NOSO (Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A367QS50_9NOSO) HSP 1 Score: 214 bits (545), Expect = 4.950e-63 Identity = 116/280 (41.43%), Postives = 154/280 (55.00%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSDEALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
SGLP+Q+ QW+ +L +A++ G+ H+S+YDL +E GTAFGR+Y PG+SPLP D T MY+ +VL GAG++HYEISNYA+PG Q RHNR YWEN P+ FG GAASYVDG+RF+RPR+ EY WV +L A GG D E E + L + +MLG RL EGL+L L K+G + + + + +GWV + GR+RL DPDGFLFSN V++ +F L
Sbjct: 175 SGLPHQSLDQWQDSLDKAVALGSTHISIYDLTIEPGTAFGRYYKPGDSPLPTDETTVKMYQMGQQVLTGAGYKHYEISNYAQPGHQCRHNRVYWENRPYYGFGMGAASYVDGKRFTRPRKTQEYYRWVQDLIA-----------------NGGVIDWEVTPPEEI----LLETLMLGLRLAEGLNLADLVEKFGEQKVKEIHKCLRSHFEKGWVE-------------------------------------IVEGRLRLCDPDGFLFSNVVLAELFSHL 396
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: K9WMG2_9CYAN (Heme chaperone HemW n=4 Tax=Oscillatoriales TaxID=1150 RepID=K9WMG2_9CYAN) HSP 1 Score: 214 bits (546), Expect = 1.030e-62 Identity = 119/283 (42.05%), Postives = 153/283 (54.06%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSDEA--LERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
SGLP+QT QW+ +L A+ H+S YDL +E TAFGR YAPG PLP D T A MYR A ++L AG+EHYEISNYA PG Q RHNR YWEN P+ FG GAASYV GRRF+RPR +Y WV +L + +G+ DE E D L + +MLG RL EG++L TL K+G + + +GW+ D D+ + P+ L GR+RLSDP+GFLFSN+V++ +F LD
Sbjct: 200 SGLPHQTLDQWQESLETAVQLAPTHISCYDLIIEPVTAFGRQYAPGAKPLPTDDTAAQMYRLAQQILTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVQGRRFTRPRTRWDYYAWVQQLI-----------------------EADGVLDEPELSETDVLLETLMLGLRLAEGVNLSTLIQKFGDKTLEPIWTALHPYFYKGWIEVVEEDRAVIDQPN--------------------PQKLPSNGRLRLSDPEGFLFSNTVLADLFKNLD 439
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: UPI00187FF847 (radical SAM family heme chaperone HemW n=1 Tax=Phormidium sp. LEGE 05292 TaxID=2777964 RepID=UPI00187FF847) HSP 1 Score: 212 bits (540), Expect = 6.260e-62 Identity = 117/284 (41.20%), Postives = 159/284 (55.99%), Query Frame = 1
Query: 1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSP-EALMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
SGLP QT QWE +L +A+ H+SVYDL +E GTAFGR+Y PG PLP D T A MYR ++L +G+EHYEISNYA+PG Q RHNR YWEN P+ AFG GAASY++ +RF+RP++ EY WV L A ++G+ D + E D L + +MLG RL EGL + LA K+G + + GWV +SA+ LSP + L GR++L+DP+GFLFSN+V++++F +L+
Sbjct: 183 SGLPKQTIEQWEESLRKAVELNPTHISVYDLIIEDGTAFGRYYQPGSQPLPTDETTAQMYRLTQQILTLSGYEHYEISNYAQPGHQCRHNRVYWENRPYYAFGMGAASYLNRQRFTRPKKRKEYYAWVQHLIA-----------------------SDGILDAPQIDEHDILLETLMLGLRLAEGLKIAVLAEKFGRKTLEKIWHCLQPYYQTGWV-----------EISANNSANIA----------LSPTDKLPVTGRLKLTDPEGFLFSNTVLAALFSQLE 422 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9220.17285.1 >prot_S-dermatodea_contig9220.17285.1 ID=prot_S-dermatodea_contig9220.17285.1|Name=mRNA_S-dermatodea_contig9220.17285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=280bp MQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADback to top mRNA from alignment at S-dermatodea_contig9220:411..4092+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9220.17285.1 ID=mRNA_S-dermatodea_contig9220.17285.1|Name=mRNA_S-dermatodea_contig9220.17285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3682bp|location=Sequence derived from alignment at S-dermatodea_contig9220:411..4092+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9220:411..4092+ >mRNA_S-dermatodea_contig9220.17285.1 ID=mRNA_S-dermatodea_contig9220.17285.1|Name=mRNA_S-dermatodea_contig9220.17285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at S-dermatodea_contig9220:411..4092+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |