mRNA_S-dermatodea_contig9220.17285.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9220.17285.1
Unique NamemRNA_S-dermatodea_contig9220.17285.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE)

HSP 1 Score: 372 bits (955), Expect = 8.410e-123
Identity = 216/357 (60.50%), Postives = 235/357 (65.83%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATA----TAAEASSPRGGGGGDTEGLSD-----EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRD------HG-----------------------DGG------------AADRVSASARKTSCEGED---GGGEEGLSPEALMKRG------RIRLSDPDGFLFSNSVISSVFCELDGWQRDP*DGCQVGGVVT 894
            SGLP QT  QWEHTLSEAI+TGAAH+SVYDLQVEAGT FGRW++PGE+PLPED TCADMYRTASRVLG AG+ HYEISNYARPGFQSRHNRAYWENVPFLAFGNGAAS+VDG RFSRPR LPEY  WV EL   GWA+AT     TA E   P GGG GD  G+ +     EALERDAL DDVMLGFRLKEGLDL  +ASKYG  AAR VEEGA EG+  GWV+RD      HG                       DGG            AA  V    R +   G     GGG E  + E     G       +RLSDPDGFLFSNSVISSVFCELDGW++   D  Q GGV +
Sbjct:  181 SGLPKQTVEQWEHTLSEAIATGAAHISVYDLQVEAGTPFGRWFSPGEAPLPEDETCADMYRTASRVLGRAGYGHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVGELEEEGWAKATGAPRRTACEEVLPGGGGMGDGGGVEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRDAAATGSHGGDVGAGGEKSGRNVDRVDDDFVYDGGRRSSSSTLGAGSAAGNVGDHGRTSPGRGLPDYRGGGHEDRTAEVASNSGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKKC--DQEQDGGVAS 535          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 2.260e-119
Identity = 210/354 (59.32%), Postives = 230/354 (64.97%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATAT----AAEASSPRGGGGGDTEGLSD-----EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDH----------------------------------------GDGGAADRVSASARKTSCEG---EDGGGEEGLSPEALM------KRGRIRLSDPDGFLFSNSVISSVFCELDGWQRDP*DGCQVGGV 888
            SGLP QT  QWEHTLSEAI+TGAAH+SVYDLQVEAGT FGRW++PGE+PLPED TCADMYRTAS VLG AG++HYEISNYARPGFQSRHNRAYWENVPFLAFGNGAAS+VDG RFSRPR LPEY  WV EL   GW +AT      A E   P GGG GD  G  +     EALERDAL DDVMLGFRLKEGLDL  +ASKYG  AAR VEEGA EG+ +GWV+RD                                         G G AA  V    R +   G   +  GG+E    E         + G +RLSDPDGFLFSNSVISSVFCELDGW+R   D  Q GGV
Sbjct:  240 SGLPKQTVEQWEHTLSEAIATGAAHISVYDLQVEAGTPFGRWFSPGEAPLPEDETCADMYRTASGVLGQAGYDHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGYRFSRPRGLPEYGQWVGELEEEGWDKATGAPRRAACEEVLPGGGGMGDGAGAEESRPSREALERDALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRDTAARGSRGGDAGAGGEKGGRNVGRVDDDFVYDGGRGSSSTLGAGSAAGDVGDHGRTSPGRGFPDDRSGGQEDRRAEVASDGGPRGEWGTLRLSDPDGFLFSNSVISSVFCELDGWKRC--DQEQDGGV 591          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A836CMJ4_9STRA (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ4_9STRA)

HSP 1 Score: 233 bits (595), Expect = 2.790e-70
Identity = 139/281 (49.47%), Postives = 164/281 (58.36%), Query Frame = 1
Query:    4 GLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYA-PGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVG-WAEATATAAEASSPRGGGGGDTEGLSDEALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
            GLPNQT  QW HTLS A+ T AAH+SVYDLQVE GTAFGRW++  G +P PE+   A M+R AS VLGGA ++HYEISNYARPG QS HNRAYWEN  +LAFGNGAAS+V   RFSRPRRL EYE WV++L +   WA AT          GG   D+E  + E L         MLG RL EG+DLD L  + GA     V  GA EGV                                  E GL   A ++ GR+ L++P+G L SNSVIS +F EL
Sbjct:  186 GLPNQTRAQWRHTLSAAVDTRAAHISVYDLQVEDGTAFGRWFSGAGAAPFPEESEGAGMFRDASAVLGGAFYDHYEISNYARPGHQSAHNRAYWENRHYLAFGNGAASHVARARFSRPRRLQEYEAWVEQLESSNDWASAT----------GGEPMDSESAAIEGL---------MLGLRLSEGVDLDKLREEVGAEWVERVLRGAREGV----------------------------------EGGL---ARVEGGRLALTNPEGMLMSNSVISGIFAEL 410          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A8J6RHZ2_9CYAN (Heme chaperone HemW n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6RHZ2_9CYAN)

HSP 1 Score: 220 bits (560), Expect = 5.280e-65
Identity = 121/287 (42.16%), Postives = 162/287 (56.45%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWV--LRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEA--LMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
            SGLP+QTS  W+ +L +A++    H+S+YDLQVE  TAFGR Y PG  PLPED T A MYR AS +L GAG+EHYEISNYA+PG Q RHNR YWEN P+ AFG GAASY+ G RF+RPR+  EY  WV +L+  G                       G+ D  +    + L + +MLG RL EGL L TLA ++G +    + +       +GWV  + D+G                         E + P+   L   GRI+L+DP+GFLFSN +++ +F +L+
Sbjct:  182 SGLPHQTSDHWQESLLKAVAIAPTHISIYDLQVEPVTAFGRQYQPGAKPLPEDETAAQMYRQASEILTGAGYEHYEISNYAQPGHQCRHNRVYWENRPYYAFGMGAASYLQGCRFTRPRKTREYYEWVQQLSEAG-----------------------GVLDCPQISASEVLLETLMLGLRLAEGLSLSTLAERFGEQTLSKIGKCLQPYYQQGWVEVVTDNG-------------------------EAIRPQIQKLSASGRIKLTDPEGFLFSNVILADLFSQLE 420          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A1U7ILW9_9CYAN (Heme chaperone HemW n=2 Tax=Phormidium ambiguum TaxID=71191 RepID=A0A1U7ILW9_9CYAN)

HSP 1 Score: 219 bits (558), Expect = 9.960e-65
Identity = 119/283 (42.05%), Postives = 162/283 (57.24%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
            SGLP QT  QW+ TL +A+     H+SVYDL +E GTAFGR+Y PG  PLP D T A MYR   ++L  +G+EHYEISNYA+PG Q RHNR YWEN P+ AFG GAASY++ +RF+RP++  EY  WV +L A G                       G+ D  +  E+D L + +MLG RL EGL+L  LA K+       +  G      +GWV     +G   +R+S S                 S E L   GR++L+DP+GFLFSN++++++F +L+
Sbjct:  176 SGLPKQTIAQWQETLEKAVVINPTHISVYDLIIEDGTAFGRYYQPGSQPLPTDETTAQMYRLTQQILTNSGYEHYEISNYAQPGHQCRHNRVYWENRPYYAFGMGAASYLNRQRFTRPKKRREYYAWVKQLIADG-----------------------GIIDTPQVDEQDILLETLMLGLRLAEGLELAVLAEKFSQETLEKIWHGVQPYYQKGWVAIFATNG---ERISLS-----------------SNENLPIMGRLKLTDPEGFLFSNTILAALFSQLE 415          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A3C0N230_9CYAN (Heme chaperone HemW n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0N230_9CYAN)

HSP 1 Score: 217 bits (552), Expect = 7.990e-64
Identity = 123/282 (43.62%), Postives = 154/282 (54.61%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
            SGLP QT  QW+ +L  AIS    H+S YDL VE  TAFGR YAPG  PLP D T A MYR A +VL  AG+EHYEISNYA PG Q RHNR YWEN P+  FG GAASYVDGRRF+R R   EY TWV +L   G                       G+ D  E  E D L +++MLG RL EGL L TL  ++G +    +          GWV          + V    +  + + +          + LM  G++RLSDP+GFLFSN++++ +F +L
Sbjct:  180 SGLPYQTLDQWQASLEAAISIAPTHISCYDLIVEPVTAFGRQYAPGAKPLPTDETAAQMYRVAQQVLTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVDGRRFTRGRTRREYYTWVQQLIDAG-----------------------GVMDCPELSESDVLLENLMLGLRLAEGLSLSTLILQFGEKTLEQIWTSLQPYYRNGWV----------EIVGTDGKVIAVQND----------QKLMMTGQLRLSDPEGFLFSNTILADLFSQL 418          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: B4VWX2_9CYAN (Heme chaperone HemW n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VWX2_9CYAN)

HSP 1 Score: 216 bits (549), Expect = 1.720e-63
Identity = 121/282 (42.91%), Postives = 149/282 (52.84%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSDEALER--DALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
            SGLP QT  QW+ +L+ AI     H+S YDL +E  TAFGR Y+PG SPLP D T A MYR A ++L  AG+EHYEISNYA P  Q RHNR YWEN PF  FG GAASY+  RRF+RPR   EY  WV++    G                       G+ D  L R  D L + VMLG RL +GL L  L  K+G      +       V +GW+     DG   D  + S R  S                    GRIRLSDP+GFLFSN++++ +F E+
Sbjct:  168 SGLPTQTLEQWQESLAAAIQLAPTHISCYDLTIEPVTAFGRQYSPGISPLPTDETTAQMYRLAQQLLTDAGYEHYEISNYALPTHQCRHNRVYWENRPFYGFGMGAASYIQARRFTRPRTRREYYAWVEQFIQAG-----------------------GVLDSPLSRTTDILLETVMLGLRLADGLSLSALREKFGETLIERIWRSLQPSVDKGWITIVTPDGSVIDMQAVSNRPIS--------------------GRIRLSDPNGFLFSNTILADIFKEI 406          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: A0A367QS50_9NOSO (Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A367QS50_9NOSO)

HSP 1 Score: 214 bits (545), Expect = 4.950e-63
Identity = 116/280 (41.43%), Postives = 154/280 (55.00%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSDEALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCEL 840
            SGLP+Q+  QW+ +L +A++ G+ H+S+YDL +E GTAFGR+Y PG+SPLP D T   MY+   +VL GAG++HYEISNYA+PG Q RHNR YWEN P+  FG GAASYVDG+RF+RPR+  EY  WV +L A                  GG  D E    E +    L + +MLG RL EGL+L  L  K+G +  + + +       +GWV                                      +  GR+RL DPDGFLFSN V++ +F  L
Sbjct:  175 SGLPHQSLDQWQDSLDKAVALGSTHISIYDLTIEPGTAFGRYYKPGDSPLPTDETTVKMYQMGQQVLTGAGYKHYEISNYAQPGHQCRHNRVYWENRPYYGFGMGAASYVDGKRFTRPRKTQEYYRWVQDLIA-----------------NGGVIDWEVTPPEEI----LLETLMLGLRLAEGLNLADLVEKFGEQKVKEIHKCLRSHFEKGWVE-------------------------------------IVEGRLRLCDPDGFLFSNVVLAELFSHL 396          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: K9WMG2_9CYAN (Heme chaperone HemW n=4 Tax=Oscillatoriales TaxID=1150 RepID=K9WMG2_9CYAN)

HSP 1 Score: 214 bits (546), Expect = 1.030e-62
Identity = 119/283 (42.05%), Postives = 153/283 (54.06%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSDEA--LERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
            SGLP+QT  QW+ +L  A+     H+S YDL +E  TAFGR YAPG  PLP D T A MYR A ++L  AG+EHYEISNYA PG Q RHNR YWEN P+  FG GAASYV GRRF+RPR   +Y  WV +L                        + +G+ DE    E D L + +MLG RL EG++L TL  K+G +    +         +GW+     D    D+ +                    P+ L   GR+RLSDP+GFLFSN+V++ +F  LD
Sbjct:  200 SGLPHQTLDQWQESLETAVQLAPTHISCYDLIIEPVTAFGRQYAPGAKPLPTDDTAAQMYRLAQQILTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVQGRRFTRPRTRWDYYAWVQQLI-----------------------EADGVLDEPELSETDVLLETLMLGLRLAEGVNLSTLIQKFGDKTLEPIWTALHPYFYKGWIEVVEEDRAVIDQPN--------------------PQKLPSNGRLRLSDPEGFLFSNTVLADLFKNLD 439          
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Match: UPI00187FF847 (radical SAM family heme chaperone HemW n=1 Tax=Phormidium sp. LEGE 05292 TaxID=2777964 RepID=UPI00187FF847)

HSP 1 Score: 212 bits (540), Expect = 6.260e-62
Identity = 117/284 (41.20%), Postives = 159/284 (55.99%), Query Frame = 1
Query:    1 SGLPNQTSMQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCADMYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASYVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTEGLSD--EALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEGVGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSP-EALMKRGRIRLSDPDGFLFSNSVISSVFCELD 843
            SGLP QT  QWE +L +A+     H+SVYDL +E GTAFGR+Y PG  PLP D T A MYR   ++L  +G+EHYEISNYA+PG Q RHNR YWEN P+ AFG GAASY++ +RF+RP++  EY  WV  L A                       ++G+ D  +  E D L + +MLG RL EGL +  LA K+G +    +          GWV            +SA+                LSP + L   GR++L+DP+GFLFSN+V++++F +L+
Sbjct:  183 SGLPKQTIEQWEESLRKAVELNPTHISVYDLIIEDGTAFGRYYQPGSQPLPTDETTAQMYRLTQQILTLSGYEHYEISNYAQPGHQCRHNRVYWENRPYYAFGMGAASYLNRQRFTRPKKRKEYYAWVQHLIA-----------------------SDGILDAPQIDEHDILLETLMLGLRLAEGLKIAVLAEKFGRKTLEKIWHCLQPYYQTGWV-----------EISANNSANIA----------LSPTDKLPVTGRLKLTDPEGFLFSNTVLAALFSQLE 422          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9220.17285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K982_9PHAE8.410e-12360.50Radical SAM core domain-containing protein n=1 Tax... [more]
D7FRC0_ECTSI2.260e-11959.32Radical S-adenosyl methionine domain-containing pr... [more]
A0A836CMJ4_9STRA2.790e-7049.47Radical S-adenosyl methionine domain-containing pr... [more]
A0A8J6RHZ2_9CYAN5.280e-6542.16Heme chaperone HemW n=5 Tax=Cyanobacteria TaxID=11... [more]
A0A1U7ILW9_9CYAN9.960e-6542.05Heme chaperone HemW n=2 Tax=Phormidium ambiguum Ta... [more]
A0A3C0N230_9CYAN7.990e-6443.62Heme chaperone HemW n=1 Tax=Cyanobacteria bacteriu... [more]
B4VWX2_9CYAN1.720e-6342.91Heme chaperone HemW n=1 Tax=Coleofasciculus chthon... [more]
A0A367QS50_9NOSO4.950e-6341.43Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162... [more]
K9WMG2_9CYAN1.030e-6242.05Heme chaperone HemW n=4 Tax=Oscillatoriales TaxID=... [more]
UPI00187FF8476.260e-6241.20radical SAM family heme chaperone HemW n=1 Tax=Pho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9220contigS-dermatodea_contig9220:411..4092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.5
Seed ortholog evalue5.9e-96
Seed eggNOG ortholog2880.D7FRC0
EggNOG free text desc.coproporphyrinogen oxidase activity
EggNOG OGs2QRH0@2759,COG0635@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size996
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9220.17285.1prot_S-dermatodea_contig9220.17285.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9220 435..3960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.8727558-UTR-S-dermatodea_contig9220:410..4341622925394.8727558-UTR-S-dermatodea_contig9220:410..434Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9220 411..434 +
1694079904.4274025-UTR-S-dermatodea_contig9220:410..4341694079904.4274025-UTR-S-dermatodea_contig9220:410..434Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9220 411..434 +
1622925394.939526-UTR-S-dermatodea_contig9220:3960..40921622925394.939526-UTR-S-dermatodea_contig9220:3960..4092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9220 3961..4092 +
1694079904.485138-UTR-S-dermatodea_contig9220:3960..40921694079904.485138-UTR-S-dermatodea_contig9220:3960..4092Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9220 3961..4092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925394.883249-CDS-S-dermatodea_contig9220:434..5061622925394.883249-CDS-S-dermatodea_contig9220:434..506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 435..506 +
1694079904.4410288-CDS-S-dermatodea_contig9220:434..5061694079904.4410288-CDS-S-dermatodea_contig9220:434..506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 435..506 +
1622925394.8940365-CDS-S-dermatodea_contig9220:1172..13041622925394.8940365-CDS-S-dermatodea_contig9220:1172..1304Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 1173..1304 +
1694079904.4520586-CDS-S-dermatodea_contig9220:1172..13041694079904.4520586-CDS-S-dermatodea_contig9220:1172..1304Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 1173..1304 +
1622925394.907634-CDS-S-dermatodea_contig9220:2746..30191622925394.907634-CDS-S-dermatodea_contig9220:2746..3019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 2747..3019 +
1694079904.4631987-CDS-S-dermatodea_contig9220:2746..30191694079904.4631987-CDS-S-dermatodea_contig9220:2746..3019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 2747..3019 +
1622925394.9197626-CDS-S-dermatodea_contig9220:3597..39601622925394.9197626-CDS-S-dermatodea_contig9220:3597..3960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 3598..3960 +
1694079904.474288-CDS-S-dermatodea_contig9220:3597..39601694079904.474288-CDS-S-dermatodea_contig9220:3597..3960Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9220 3598..3960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9220.17285.1

>prot_S-dermatodea_contig9220.17285.1 ID=prot_S-dermatodea_contig9220.17285.1|Name=mRNA_S-dermatodea_contig9220.17285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=280bp
MQWEHTLSEAISTGAAHVSVYDLQVEAGTAFGRWYAPGESPLPEDGTCAD
MYRTASRVLGGAGFEHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAAS
YVDGRRFSRPRRLPEYETWVDELAAVGWAEATATAAEASSPRGGGGGDTE
GLSDEALERDALFDDVMLGFRLKEGLDLDTLASKYGARAARNVEEGAAEG
VGRGWVLRDHGDGGAADRVSASARKTSCEGEDGGGEEGLSPEALMKRGRI
RLSDPDGFLFSNSVISSVFCELDGWQRDP*
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mRNA from alignment at S-dermatodea_contig9220:411..4092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9220.17285.1 ID=mRNA_S-dermatodea_contig9220.17285.1|Name=mRNA_S-dermatodea_contig9220.17285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3682bp|location=Sequence derived from alignment at S-dermatodea_contig9220:411..4092+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGGACTGCCTAACCAGACTTCGATGCAGTGGGAGCACACTCTCTCTGA GGCAATATCGACGGGCGCGGCGCACGTCAGCGTTTACGATCTGCAGGTAC TTGCTTACAAGACAGAAACCAAAACACAAGATAGACCAGAACTACAAAAA TATCTCCGGAAGCACCTTTCCTCGTCAACGATTACGGAGGTACACTAAAA TCAAGTAATCAGGACCAAATCCCCATGACCATGAAAATCCAACTGTTCCG ACCATTAATACCCTAACAACAAAGATATCATGGAAAAAAGAAAGGACACG ATATTTGGCCGTACATAAGAACATTGACCTTTAAATCTCGATAATTCCAG CCTATTTTGATTTTTCCACGTTGAGACTTTATGGTATGGCAAATTTGGAC TTGTTAAGTTAACTATGGTCTAGTCCCCCGTAATAGTGTGGAGCCGTTTG TATCTCACTACTACAGGGTGCACCCGCGCGATTTTTTCGGCCGATCGTGG TGTTCACAAGCTAAAAGAGATAAAATCAGTTTTTCACTGAAGGGGTGCTA CCGTACCGATGACGCCCACACACCCCACAACAACAGAGCCATCGTCAAAT AACACAGCAGTGCATGCGCGGTACGCCTGTTGCCTCGCTCGCGCCAACAC GCCTAAACGCATTAACCCGCCCATGCCATGTGCTGATCGGCTGCGCGATC GAGCCGACGAAAGTGTCTGCTTTTCACGAGTTGTAAAACGAACGCGCTTT CGCCTGTGGCAGGTCGAGGCGGGAACGGCGTTCGGCAGGTGGTACGCGCC TGGGGAGTCGCCCCTTCCAGAAGACGGCACATGCGCGGATATGTACCGCA CCGCCAGCAGGGTCCTCGGCGGGGCGGGGTTCGAGCACTACGAGGTGAGG AGAGCGCCTTGCCTTGGCGACCCAGCACCGAGAGGCACCCAGTGCTTGCG CGAGTTTTGGCACCGGTGTTCCAGCTCATGTCTTGGCTTGCGATATACTA TAATGCTAAGTGTTAATATTACATACTGTTAATATTTCATACTGTTAATA TTACATACTGTTAATATTAGATAATGTTAATATTAATATTACGGAGGACC ATAGTTAAAAGGTCCAAATTTGCCACAAGTCTCAACCTAGATACTGTATA AACAAAATAGGCTGGAATTTCACCGAGATTTCGTGGTCGATATTCTTGTA TAAGGCAATATCTCGTGTTTTTTTTTTTCTAATTCTAATTCTTCACTAAT TTTTGTTGTTGTTGTTTGGGAATTCATGGTCGGAATAGTACTATTAATAA TATAGTATTGTATTCATTGTCCTCATTACTACTTGTATTACTATTACTAC TGTGTTCCTCAGTAATAGTAATAATAATAATAATAGTAATAGTGGTTCGG TAGGTCGAATAATGGGGATACAGGTAGCATGCCCACGCCCCCCCCCCCCC CTCCTACCCCCTACAAGCATAGACCGCCATTTTTGCACTTGTTCTTTTCC GCCGCAGGCTTCCAGGGTAAATCACCCATGGAGCTGAAGGCACCGTCCGT TATGGTGCTGCCATTCCTGCTGTAGGATCCGCAGCCGCTTGATATTTGCG GGGGCGGACGTTCATGATTTACACCGACACTATCACGGAGGGACACTATA ATCAAGTAATCAGGACTAAATATCATGACCATGAATACCAACTATTCCGA CCATGAGTACCCAAAAAAAAAAAAAAAAACAAGAGATATTGCCGGCCATA CACAAGAACATCGACCTTGAAATCTCGATAATTCCAGCCTATTTTGATTT TTCTAGGTTTGTGACTTGTGGCAGCTTTGGACCTGTTAACGTTAACAATT AATATGGTCTAGTCCCCCGTAATGGTATGTATGATGTATGATAGCCACGG CTACGCCCACGAGGTGTGCGTCGGCAGGACGGTATGTGGGTTGGGTTTGG AGGCCACGGTGGGTATAATAACCACGGCAGGCGTGCACCGACGGAGGAAG CCGAGCGCGCGCGCGGGGGGGCGTGGACGGGCTGCGAGCGTTCAGCAGAG AGACAAAAACAAAATACAGCACTATTAACAATCAAGTTATTTGGCACCAC ACATTTGTGATAGGATATTTTGGGCCACGAGGTGTTTAGGAAATCGTATG GGAATTCTGTATCAAAGAGCAACTCTATCAATAGTATAAATCGCTGTTAA AAAACGTTCAAAAGCGCTGTGAATTATTAAAGGTTGAGATTCGAACAGGA AAAGACACTCAACAACGCATACACCCCCCCCGCCCGCCCCTCCCTCCCAT CCCTCCCATCCCCCGCCCCAATCGAAACGCCTCCAGATTTCGAACTACGC TCGTCCCGGGTTCCAGAGCAGACACAACCGAGCCTACTGGGAAAACGTAC CCTTCTTAGCGTTCGGCAACGGAGCGGCAAGCTACGTGGACGGGCGTCGA TTTTCGCGTCCACGACGGCTTCCGGAGTATGAAACGTGGGTGGATGAGCT CGCCGCGGTAGGGTGGGCAGAAGCGACGGCCACTGCTGCGGAGGCGTCAT CGCCAAGGGGTGGCGGTGGTGGGGACACGGAAGGCCTCTCCGACGAGGCG CTGGAGCGGGTGAGCGGAGCGGGATGTCCTAGCGCGCGGGGCGAATTGTG GACTGTATATGGTTTGCTGTGGGTGCTGTTCGTTGTAAAGCGCACCGTGA TGCTGTCGTTTCTCCTGGCGATCGCGCGTGCTGGAAGCGTGGAACTTTTC GTGTCGTGACTGTGCATACGGCACCGCGATTCCTTGTGGTATAATATGTA CGGTAGCCGTCTGGGTCAGTGGTAGTTTTTCCGATCCAGCAACCGCTGTA TACGCGCACCGAGAAGCAACCTGCCCTTTTCCCCCGACAAAAGCATGCCT CGAAAGGGTATGGTGAGCCAACCTCTTGTTTTTCTCCGTACCGCATATCA TACAAGTGTATCACATTTGTACTACGTCGACGCAGTCACCAATCTTGCAC CTAACGTTTCTCCTCCAGGCGGCACTCTCTAGAAAAACCACGCAAGAAGG ACGCTCATGCTATACATACAACGGCACACACTAAGCGCAACGAAGACGAC CAAAAACCCGTCGGAAGTGTAAACTTGCGAACTTAGTTTTCCTTCCTCCT CTTTCGTTATTCTTTTATTTTCCTTTTCACTCGGCAGGACGCTCTCTTCG ACGACGTCATGCTCGGGTTCCGCCTCAAGGAAGGCCTGGACCTCGATACC TTAGCCTCTAAGTACGGCGCGCGCGCCGCCAGGAACGTAGAGGAAGGTGC CGCGGAGGGGGTCGGTCGCGGCTGGGTGCTGCGGGACCACGGGGATGGTG GCGCTGCTGATCGTGTTAGCGCTAGCGCAAGAAAAACGAGTTGTGAAGGG GAGGACGGGGGGGGTGAGGAGGGGTTAAGCCCAGAAGCGTTGATGAAGCG GGGAAGAATTCGACTGTCTGATCCGGACGGCTTCTTGTTTTCGAACTCGG TCATATCGTCCGTGTTTTGCGAGCTCGACGGGTGGCAGAGAGATCCTTGA GATGGGTGCCAAGTGGGAGGAGTAGTAACAAAAATTAGCTCTATTAATAG ATAACAATGAACATGGTATGTTGACAGGAAAGTGGTTGCTGATTCCCTGA ACCTAAACTGCGATAATTCAGCTTCGTGTTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9220:411..4092+

>mRNA_S-dermatodea_contig9220.17285.1 ID=mRNA_S-dermatodea_contig9220.17285.1|Name=mRNA_S-dermatodea_contig9220.17285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at S-dermatodea_contig9220:411..4092+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGTGGGAGCACACTCTCTCTGAGGCAATATCGACGGGCGCGGCGCA
CGTCAGCGTTTACGATCTGCAGATGCAGTGGGAGCACACTCTCTCTGAGG
CAATATCGACGGGCGCGGCGCACGTCAGCGTTTACGATCTGCAGGTCGAG
GCGGGAACGGCGTTCGGCAGGTGGTACGCGCCTGGGGAGTCGCCCCTTCC
AGAAGACGGCACATGCGCGGATATGTACCGCACCGCCAGCAGGGTCCTCG
GCGGGGCGGGGTTCGAGCACTACGAGGTCGAGGCGGGAACGGCGTTCGGC
AGGTGGTACGCGCCTGGGGAGTCGCCCCTTCCAGAAGACGGCACATGCGC
GGATATGTACCGCACCGCCAGCAGGGTCCTCGGCGGGGCGGGGTTCGAGC
ACTACGAGATTTCGAACTACGCTCGTCCCGGGTTCCAGAGCAGACACAAC
CGAGCCTACTGGGAAAACGTACCCTTCTTAGCGTTCGGCAACGGAGCGGC
AAGCTACGTGGACGGGCGTCGATTTTCGCGTCCACGACGGCTTCCGGAGT
ATGAAACGTGGGTGGATGAGCTCGCCGCGGTAGGGTGGGCAGAAGCGACG
GCCACTGCTGCGGAGGCGTCATCGCCAAGGGGTGGCGGTGGTGGGGACAC
GGAAGGCCTCTCCGACGAGGCGCTGGAGCGGATTTCGAACTACGCTCGTC
CCGGGTTCCAGAGCAGACACAACCGAGCCTACTGGGAAAACGTACCCTTC
TTAGCGTTCGGCAACGGAGCGGCAAGCTACGTGGACGGGCGTCGATTTTC
GCGTCCACGACGGCTTCCGGAGTATGAAACGTGGGTGGATGAGCTCGCCG
CGGTAGGGTGGGCAGAAGCGACGGCCACTGCTGCGGAGGCGTCATCGCCA
AGGGGTGGCGGTGGTGGGGACACGGAAGGCCTCTCCGACGAGGCGCTGGA
GCGGGACGCTCTCTTCGACGACGTCATGCTCGGGTTCCGCCTCAAGGAAG
GCCTGGACCTCGATACCTTAGCCTCTAAGTACGGCGCGCGCGCCGCCAGG
AACGTAGAGGAAGGTGCCGCGGAGGGGGTCGGTCGCGGCTGGGTGCTGCG
GGACCACGGGGATGGTGGCGCTGCTGATCGTGTTAGCGCTAGCGCAAGAA
AAACGAGTTGTGAAGGGGAGGACGGGGGGGGTGAGGAGGGGTTAAGCCCA
GAAGCGTTGATGAAGCGGGGAAGAATTCGACTGTCTGATCCGGACGGCTT
CTTGTTTTCGAACTCGGTCATATCGTCCGTGTTTTGCGAGCTCGACGGGT
GGCAGAGAGATCCTTGAGACGCTCTCTTCGACGACGTCATGCTCGGGTTC
CGCCTCAAGGAAGGCCTGGACCTCGATACCTTAGCCTCTAAGTACGGCGC
GCGCGCCGCCAGGAACGTAGAGGAAGGTGCCGCGGAGGGGGTCGGTCGCG
GCTGGGTGCTGCGGGACCACGGGGATGGTGGCGCTGCTGATCGTGTTAGC
GCTAGCGCAAGAAAAACGAGTTGTGAAGGGGAGGACGGGGGGGGTGAGGA
GGGGTTAAGCCCAGAAGCGTTGATGAAGCGGGGAAGAATTCGACTGTCTG
ATCCGGACGGCTTCTTGTTTTCGAACTCGGTCATATCGTCCGTGTTTTGC
GAGCTCGACGGGTGGCAGAGAGATCCTTGA
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