mRNA_S-dermatodea_contig92.17262.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig92.17262.1
Unique NamemRNA_S-dermatodea_contig92.17262.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: D7FQL2_ECTSI (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQL2_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 3.160e-97
Identity = 160/217 (73.73%), Postives = 180/217 (82.95%), Query Frame = 2 
Query:  359 REKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXX-VSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQRIAETKD 1006
            RE+K ALRK IK+ELK MS+ AVG AS AVAERLL+ PQL           VSVYLSMP ELGT+AIVS LFKRGKK+YIPKVLG ASADMRMFP++SEEEVASFPLTKWKI EPS ELV SREDGV  GDI V++VP +A D  CNRLGHG+G+YDCFFERVNKA+ +KG+PPPVT+GVCFDEQVVDC+PT STDV LDFVLTP+RTF+R AE  D
Sbjct:   33 REQKKALRKRIKSELKQMSDEAVGVASAAVAERLLSFPQLQQQEGGDGGGAVSVYLSMPKELGTSAIVSGLFKRGKKVYIPKVLGAASADMRMFPVRSEEEVASFPLTKWKISEPSEELVFSREDGVTEGDISVIIVPAVALDPTCNRLGHGRGHYDCFFERVNKASMDKGRPPPVTIGVCFDEQVVDCIPTESTDVRLDFVLTPTRTFRRDAEGVD 249
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A835ZF18_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF18_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.910e-60
Identity = 109/213 (51.17%), Postives = 140/213 (65.73%), Query Frame = 2 
Query:  344 AEAGFREKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTF 982
            AE     +K ALR +IK  L  + + A+ A+S A+   L   P  +  S      VS YLSMP E  T  I+  LF  GK++Y+PKV+GP  +DMRM+ ++S  ++ SFPLTKW IPEPS E VL+ EDG  TGDID+V++PG AFD RCNRLGHGKGYYD F +R   A   +G P PVT+G+C +EQVV  VP +  DVPLDFV+TP + F
Sbjct:    6 AEGSIVSEKAALRSAIKTALGKLEKPAIAASSEAILGHLKTLPCWSKSSV-----VSAYLSMPREAQTMPIMDALFTAGKRVYVPKVVGPDPSDMRMYQIESMGQIESFPLTKWNIPEPSLEAVLAAEDGTTTGDIDLVILPGCAFDARCNRLGHGKGYYDSFLKRCFAAAKARGNPIPVTVGICLEEQVVPSVPVTDHDVPLDFVVTPEQVF 213
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: W4FG50_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FG50_9STRA)

HSP 1 Score: 171 bits (433), Expect = 3.810e-45
Identity = 95/214 (44.39%), Postives = 128/214 (59.81%), Query Frame = 2 
Query:  353 GFREKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELV--LSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQR 988
            G +  K  +RK I  +L+  S   V +AS  +   L+  P            V  YL MP E  TAAI+ E+F +GKK+Y+PKV GP S DM M  + S+ ++ +FP +KW IPEP  +    L RE+ +   D+D+++VPG+AFD  CNRLGHGKGYYDCFFER   A+  +G  PP TLG+   EQV+D VPTS+ D  LD ++TP     R
Sbjct:   13 GVKALKQVIRKDIDLKLRQYSADEVASASAQLTSHLVQHPAFVQAKS-----VCAYLPMPNEASTAAIIHEIFAQGKKLYVPKVTGPRSEDMVMLHVTSQRDIDTFPKSKWNIPEPLLDHPNGLPRENALDVTDLDLILVPGVAFDAHCNRLGHGKGYYDCFFERY--ASKCRGALPP-TLGIALPEQVIDQVPTSAHDKALDGLVTPRGVLSR 218
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A067D9P6_SAPPC (5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9P6_SAPPC)

HSP 1 Score: 170 bits (431), Expect = 5.670e-45
Identity = 98/219 (44.75%), Postives = 128/219 (58.45%), Query Frame = 2 
Query:  350 AGFREKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLSRE--DGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQRIAET 1000
            A  R +K  LRK I   L+A+S   V A S A+A+ ++A              VSVYL+M  E  T+ +V  LF  GK++Y+PKV+G  S DM M  + S  E+A+FP +KW IPEP + L   R   D +   D+D+V+VPG+AFD RCNRLGHGKGYYDCF ER    N  K    PVT+G+  + Q+VD VPTS  D  LD V TP    +  A +
Sbjct:    3 ADVRSQKAVLRKHIAGLLRALSRDEVVAQSEALAQHVVALDVF-----RHARSVSVYLAMEAEAKTSTLVDALFAAGKRVYVPKVIGAKSEDMVMLRVDSATEMATFPKSKWGIPEPPSSLPSGRPRIDALDALDVDIVLVPGVAFDPRCNRLGHGKGYYDCFLERYASRNGGK---LPVTIGIALEAQIVDAVPTSGHDKMLDMVATPQGILRSSASS 213
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A1V9ZFD4_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFD4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.090e-44
Identity = 99/211 (46.92%), Postives = 127/211 (60.19%), Query Frame = 2 
Query:  359 REKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELV--LSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQ 985
            R +K ALRK ++  L+AM+  A+ A S A+A+ ++A   +          V VYLSM  E  TA I+++LF  GKK+Y+PKV G  S DM M  + SE E+ASFP +KW IPEP   L     R + +   DIDVV+VPG+AFD   NRLGHGKGYYDCFF+R    N   G   P T+G+  D Q+V  VPTS  D  LD V TP+   Q
Sbjct:   13 RSQKKALRKQVEGALRAMTPGAIVAQSNALAQHIIALDAIRTAQC-----VCVYLSMEHEARTAPILTQLFAAGKKVYVPKVTGMRSEDMVMLQVDSENEMASFPKSKWGIPEPPELLPNGTPRINALDALDIDVVLVPGVAFDAHRNRLGHGKGYYDCFFQRYALRN---GGELPATIGLALDVQMVPAVPTSDHDKVLDMVATPTGVLQ 215
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A0G4F0S7_VITBC (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0S7_VITBC)

HSP 1 Score: 168 bits (426), Expect = 8.340e-44
Identity = 87/211 (41.23%), Postives = 134/211 (63.51%), Query Frame = 2 
Query:  362 EKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMP-GELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDC--VPTSSTDVPLDFVLTPSRTFQ 985
            E+K ALR+ ++ +LK++S  ++   S AV  +L   P            V VYLSMP GE+ T  +V E F++GK++++P+V+G    DMRM  + S +E++SFP++ W IPE S +  L REDG + GDID+V+ PG+AFD+   RLGHGKGYYDCF  R+  +  ++G+P   T+G+   EQ++    +P  S D+ LD+V+TP   ++
Sbjct:   31 EQKKALRRQVRGQLKSLSHESIEPQSAAVFAQLSQHPTFVRSQC-----VCVYLSMPSGEIDTHTLVREAFRQGKRVFVPRVVGKNPPDMRMVEVSSVDEISSFPMSPWGIPELSLDETLRREDGTYCGDIDLVICPGVAFDQSGRRLGHGKGYYDCFLARLFASLKDRGRPRTTTIGIGLREQLLPLATIPMDSLDMFLDWVVTPDGVYE 236
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A4D9D4C9_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4C9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.110e-43
Identity = 99/230 (43.04%), Postives = 138/230 (60.00%), Query Frame = 2 
Query:  326 TAGPAVAEAGFREKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPG-ELGTAAIVSELFK--------RGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQR 988
            +A P+ A A   EKK  LRKSI A L+A+ +S V A ++ +  RLLA  +    +      VS+YLSMP  E+ T   + E           R + +Y+PKV GPA  DM M PL S E+V+SFP++KW IPEP     LS         +D+V+VPG+AFD +CNRLGHGKGYYD F  R+  ++A  G+  P+T+G+  +EQ+V  VP  + D+PLD V+TP + + R
Sbjct:    3 SANPSNAGASLSEKKKDLRKSITARLRALDDSYVAAEASRLFPRLLALEEYTDSTC-----VSLYLSMPAKEVPTFPDLLEAVMTDGKGAEGRARDVYVPKVTGPAPGDMVMLPLSSPEDVSSFPVSKWGIPEPPLPPSLSPS----LPPLDLVLVPGVAFDNKCNRLGHGKGYYDSFLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKVYFR 223
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A8K1CD56_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD56_PYTOL)

HSP 1 Score: 164 bits (414), Expect = 1.480e-42
Identity = 85/208 (40.87%), Postives = 124/208 (59.62%), Query Frame = 2 
Query:  368 KMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLS--REDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQ 985
            K ALRKSI A L+A+ +  +   S A+A+R+ A P+           +SVYL MP E  T  I++  F   KK+Y+PK++G  + D++M    S E++ +FP  KW+IP+P  E      R D + + D+D+V++PG+AFD    RLGHGKGYYD F  R+ +A  E  +P PVT+G+C   Q+VD VP S  D  LD ++TP    +
Sbjct:   11 KKALRKSIAASLRAIEDQEITRQSDAIAQRIAALPEF-----QQAMALSVYLHMPKEAATRNILTHSFAEKKKVYVPKIVGKGAEDLKMVHASSLEDIDAFPKDKWQIPDPPLENSAGEPRNDAITSRDLDLVLLPGVAFDRSGGRLGHGKGYYDSFLRRLTEAYDEHNRPLPVTVGICLSSQLVDAVPLSPHDRMLDVIVTPEEVIR 213
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BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A485KPN3_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPN3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.370e-41
Identity = 91/210 (43.33%), Postives = 127/210 (60.48%), Query Frame = 2 
Query:  368 KMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELV--LSREDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFER-VNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQR 988
            K  LRK I  +LK M+   + AAS  +   L+  P+           V  YL+MP E  T  I+ E+F +GK++Y+PKV G  S DM M  ++SE ++ SFP +KW IPEP+  L   L+R + + T D+D+++VPG+AFD  CNRLGHGKGYYD FFER   KA+       P T+G+    Q+VD VPTS+ D  LD V+TP+   ++
Sbjct:   22 KKTLRKDIDHQLKHMAREDIAAASANLQRHLVTLPEFIRAKS-----VCAYLAMPNEASTDTILREIFAQGKQLYVPKVTGGNSEDMLMLRVESEADIESFPKSKWNIPEPALLLPSGLARLNALDTLDVDLIIVPGVAFDASCNRLGHGKGYYDSFFERYAAKADGHL----PATVGIALALQLVDSVPTSAHDRVLDMVVTPNGVVRK 222
[Close]
BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Match: A0A024UKC7_9STRA (5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKC7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.190e-41
Identity = 90/208 (43.27%), Postives = 122/208 (58.65%), Query Frame = 2 
Query:  353 GFREKKMALRKSIKAELKAMSESAVGAASTAVAERLLATPQLAAGSXXXXXXVSVYLSMPGELGTAAIVSELFKRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLS--REDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGKPPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTP 970
            G R  K ALRK I  +L+ ++   +  AS  +   L+  P            V  YL MP E  T+ I+ E+F +GKK+Y+PKV GP S DM M  + S+ ++ +FP +KW IPEP  E      R+  +   D+D+++VPG+AFD +CNRLGHGKGYYDCFF+R   A+   G  PP+ LGV   EQ+V  VPT   D  LD V+TP
Sbjct:    3 GVRALKKALRKDIDQKLRQLTADEIAEASAQLTAHLIQHPAFVMAKT-----VCAYLPMPNEASTSGIIDEIFAQGKKLYVPKVTGPRSEDMVMLHVASQRDIDAFPKSKWNIPEPWFEHPHGGLRDSALDEVDLDLILVPGVAFDGQCNRLGHGKGYYDCFFDRY--ASKTNGLLPPM-LGVALAEQIVSRVPTCEHDKALDAVVTP 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig92.17262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQL2_ECTSI3.160e-9773.735-formyltetrahydrofolate cyclo-ligase n=2 Tax=Ecto... [more]
A0A835ZF18_9STRA2.910e-6051.175-formyltetrahydrofolate cyclo-ligase n=1 Tax=Trib... [more]
W4FG50_9STRA3.810e-4544.395-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]
A0A067D9P6_SAPPC5.670e-4544.755-formyltetrahydrofolate cyclo-ligase n=2 Tax=Sapr... [more]
A0A1V9ZFD4_9STRA4.090e-4446.925-formyltetrahydrofolate cyclo-ligase n=1 Tax=Achl... [more]
A0A0G4F0S7_VITBC8.340e-4441.235-formyltetrahydrofolate cyclo-ligase n=1 Tax=Vitr... [more]
A0A4D9D4C9_9STRA6.110e-4343.045-formyltetrahydrofolate cyclo-ligase n=1 Tax=Nann... [more]
A0A8K1CD56_PYTOL1.480e-4240.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KPN3_9STRA2.370e-4143.335-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]
A0A024UKC7_9STRA4.190e-4143.275-formyltetrahydrofolate cyclo-ligase n=1 Tax=Apha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig92contigS-dermatodea_contig92:8367..12392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue7.9e-83
Seed eggNOG ortholog2880.D7FQL2
Preferred nameMTHFS
KEGG rclassRC00183
KEGG koko:K01934,ko:K02731,ko:K22255
KEGG ReactionR02301
KEGG Pathwayko00670,ko01100,ko03050,map00670,map01100,map03050
KEGG ModuleM00337,M00340
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005524,GO:0005542,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006575,GO:0006725,GO:0006730,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006952,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009064,GO:0009108,GO:0009109,GO:0009111,GO:0009396,GO:0009397,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015942,GO:0016053,GO:0016054,GO:0016874,GO:0016879,GO:0016882,GO:0016999,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019439,GO:0019752,GO:0019842,GO:0019899,GO:0030234,GO:0030272,GO:0030554,GO:0031406,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032780,GO:0032787,GO:0033013,GO:0033014,GO:0033218,GO:0034641,GO:0035639,GO:0035999,GO:0036094,GO:0042030,GO:0042168,GO:0042219,GO:0042365,GO:0042398,GO:0042440,GO:0042558,GO:0042559,GO:0042560,GO:0042737,GO:0042742,GO:0043086,GO:0043167,GO:0043168,GO:0043177,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043462,GO:0043603,GO:0043604,GO:0043648,GO:0043649,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046394,GO:0046395,GO:0046483,GO:0046653,GO:0046655,GO:0046657,GO:0046700,GO:0050790,GO:0050830,GO:0050896,GO:0051117,GO:0051186,GO:0051187,GO:0051188,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072341,GO:0097159,GO:0097367,GO:0098542,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGsCOG0212@1,KOG3093@2759
EC3.4.25.1,6.3.3.2
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Hectar predicted targeting categorymitochondrion
Ec32 ortholog description5-formyltetrahydrofolate cyclo-ligase
Ec32 orthologEc-01_009140.1
Exons4
Model size2332
Cds size891
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig92.17262.1prot_S-dermatodea_contig92.17262.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig92 8488..11072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.7859483-UTR-S-dermatodea_contig92:8366..84871622925392.7859483-UTR-S-dermatodea_contig92:8366..8487Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92 8367..8487 +
1694079902.8886495-UTR-S-dermatodea_contig92:8366..84871694079902.8886495-UTR-S-dermatodea_contig92:8366..8487Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92 8367..8487 +
1622925392.8767846-UTR-S-dermatodea_contig92:11072..123921622925392.8767846-UTR-S-dermatodea_contig92:11072..12392Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92 11073..12392 +
1694079902.943332-UTR-S-dermatodea_contig92:11072..123921694079902.943332-UTR-S-dermatodea_contig92:11072..12392Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig92 11073..12392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.805234-CDS-S-dermatodea_contig92:8487..89671622925392.805234-CDS-S-dermatodea_contig92:8487..8967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 8488..8967 +
1694079902.901768-CDS-S-dermatodea_contig92:8487..89671694079902.901768-CDS-S-dermatodea_contig92:8487..8967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 8488..8967 +
1622925392.8239474-CDS-S-dermatodea_contig92:9590..98131622925392.8239474-CDS-S-dermatodea_contig92:9590..9813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 9591..9813 +
1694079902.9129293-CDS-S-dermatodea_contig92:9590..98131694079902.9129293-CDS-S-dermatodea_contig92:9590..9813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 9591..9813 +
1622925392.8414464-CDS-S-dermatodea_contig92:10517..105821622925392.8414464-CDS-S-dermatodea_contig92:10517..10582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 10518..10582 +
1694079902.926463-CDS-S-dermatodea_contig92:10517..105821694079902.926463-CDS-S-dermatodea_contig92:10517..10582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 10518..10582 +
1622925392.8606293-CDS-S-dermatodea_contig92:10949..110721622925392.8606293-CDS-S-dermatodea_contig92:10949..11072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 10950..11072 +
1694079902.9346693-CDS-S-dermatodea_contig92:10949..110721694079902.9346693-CDS-S-dermatodea_contig92:10949..11072Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig92 10950..11072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig92.17262.1

>prot_S-dermatodea_contig92.17262.1 ID=prot_S-dermatodea_contig92.17262.1|Name=mRNA_S-dermatodea_contig92.17262.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=297bp
MLDRGLALCTCRAGTLSVGLRAVAHPFLGSIPSLRGGPPATRPPLSRHQR
TFNNMSVAAAKKAGAGDDTAGPAVAEAGFREKKMALRKSIKAELKAMSES
AVGAASTAVAERLLATPQLAAGSGGGGGGVSVYLSMPGELGTAAIVSELF
KRGKKIYIPKVLGPASADMRMFPLQSEEEVASFPLTKWKIPEPSAELVLS
REDGVFTGDIDVVVVPGMAFDERCNRLGHGKGYYDCFFERVNKANAEKGK
PPPVTLGVCFDEQVVDCVPTSSTDVPLDFVLTPSRTFQRIAETKDP*
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mRNA from alignment at S-dermatodea_contig92:8367..12392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig92.17262.1 ID=mRNA_S-dermatodea_contig92.17262.1|Name=mRNA_S-dermatodea_contig92.17262.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4026bp|location=Sequence derived from alignment at S-dermatodea_contig92:8367..12392+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGGGTCTGATATGGAACTTCCCCAAATAAGTTCTATACTGTCATAGTC
TATTTGAAGGACCAAGAACAACTGCTACAACTGTACAAGCTACAAGTACA
CTTCGTGTGTGTCGCCTGCTCATGCTCGATAGAGGCCTCGCCCTGTGCAC
CTGTCGCGCGGGAACGCTCTCGGTGGGACTGAGAGCAGTAGCGCACCCTT
TTCTCGGCAGCATCCCGTCCCTGCGGGGCGGTCCTCCGGCGACCCGGCCG
CCTCTGTCACGTCATCAACGGACCTTCAACAACATGTCGGTGGCTGCAGC
AAAGAAGGCTGGTGCGGGGGACGACACAGCAGGACCAGCGGTGGCCGAAG
CAGGATTTCGCGAGAAGAAGATGGCGCTGCGGAAGAGCATTAAGGCTGAG
CTGAAGGCAATGAGCGAGTCTGCGGTGGGCGCGGCGTCGACGGCGGTGGC
GGAGCGATTGCTCGCGACTCCGCAGTTGGCTGCCGGGAGCGGCGGCGGCG
GGGGGGGGGTGAGCGTCTACTTGTCCATGCCGGGTGAGCTGGGCACTGCG
GCCATCGTGAGCGAGCTGTTCAAGCGAGGGAAGAAGATCTACATCCCCAA
GGTGAGAGCTGAGTTGGAGGTGGAGTTTGAAAGCTTGGAAATGTAGCTGC
AATGGAGCGTTTGTCTGCAGGAATGCCTACATGTGTGTATGACATCATAG
CGCCTTTTTCGATTTTCAGTATGACATGATCTCCGACTGCCGAGGATCTA
CGATGATGCCTTCTACCCTGGATGACGAGTGACGACTTATGTCCAACGAC
TCCATGCTCGCTCTGGTCACATCCCGCGCTCACGACTTTCCGTGTTCTCT
TGGTGTAAAGTGAAATCAAACGCACGTCGTATGGTGGCATAATCTCAATC
AACGCATGTGTATACGAAGTATATGTGATGCAAGCCGCGCAGGTTCCAAT
TTCAAGTATACCGCCCGTCGCGACGCCTACATAAATAACTCTATATTATT
AAATGCGCTTTCCTTTTCATGTACCCTGTATGATAGTGGTCCAGCTGAAA
CGCAACTAAAAGCATCCCGATCGAGAGTTACCAGCACCAAGACAAACCGC
GCATATATGCCACCGGCACCGACTCTTAATATCACAAAACCATCGATCGG
CTGGATCACACCGCAATCAACGCCAACGGCTAAATATAGTTTTGTGCCTC
GCAACAACAACTACGCTGTCGCAGGTGCTAGGCCCAGCCTCTGCCGACAT
GCGGATGTTCCCCCTGCAATCGGAAGAAGAGGTTGCCTCGTTCCCTCTCA
CCAAGTGGAAAATTCCCGAGCCTTCCGCAGAGCTAGTTCTCTCGCGTGAA
GACGGGGTGTTTACCGGCGACATCGACGTGGTCGTCGTGCCGGGGATGGC
CTTCGACGAGCGGTGTAATCGATTGGGCCACGGTAAAGGCTACTACGGTG
AGTTTGTATGTGGGTGCTTGTGCGTTTGTTTGCGTGGTTTTGTGGGGTTT
TTTATCGCGTCTGCAACGGTGTGCTGTTGAGCTTGCTGCTTCTGCTGCTT
CTGCTTCGGTGTCGTAGACATTCGATGTCGACCCAACAACGGTGCATCAG
CAAGCATCACGGCAGGCAATGGCGGATGCAGGCGTTCAGGAGAGGCGCAT
CCATCCGTGCCTTGCGTTGTGGTCAAGACGCGGAATGACCTGGAAACATT
AGAACCGCTTCTTGTGCAGCTCAGGCAGGCAGTGTGGTTTGGCGTTTGTC
GGTGGAACTTTAAAAAACAGGTTTTTGTGTCGACTCCAAGCGTAAACTAT
CTCGTTTCTAGGCACGGTCGAGTGCGTCGCCGCCTCACTAGCGTCGGTGG
ATACATTTAGCCTCGTTATTTTTGCTTCTTTATATTGTAGTCTTTTGAAA
CTGCGTACTCTGTTGTGTTCAACGTCGTGGCGCCCCAAAGAAGACCAAGG
TCACCGCGCCGCATGCGTTTGCACAGCACCGGAAAGACACTTAAGACTTG
TCCTGGGTTTGAGGTCATGGAGCTGATGCGATTTTGGTTCTCGGGTCGCC
TCGGGCTTGAACTTGTACCGTACGCGCCGGTCCTCGTATGCCACGAGTAC
TTGTAAATGAGTATGGTGCTCTGCTTGCTGCGCTGCATCGTTGCGTAACA
GATTGCTTCTTTGAACGCGTCAACAAGGCCAACGCGGAAAAAGGGAAGCC
ACCACCCGTTACTTTGGTGGGTGCCGCGGCTCGGTAGATACGGCGCTCGA
GCTCTGCCCACGGTTGTGTACGCCGCGTATGGTGCAAGACGGGGCAGACT
TGATGGGCGTGGAGATGAGGGGGGGGATGCTATGATACTGCAGGCGACGT
TTGGCTCGCGTCTTGGTTGCACTCTGCGATTGTACCAGCCGTGCCGGCCG
AGTCGCGATAAAAATAGTGCCATGGGTACAAGTAGCCGGTTCCGTTTTTG
CCCTCGCAAGGCTGAGTTCGTGTTCTATACTACCAGGTACATTATATGGC
AATAGTACCCGAGACATTTACGAAGCCTGTTTTTGCCCCACTTTTTCCGT
CTGTCTGCTGCGTCGCGTGTCTCCGAACAACAGGGTGTATGCTTCGACGA
ACAGGTGGTGGACTGCGTGCCGACATCTTCCACGGACGTTCCGCTAGATT
TCGTCCTGACGCCGTCCCGCACGTTCCAACGCATCGCAGAAACGAAAGAC
CCGTAAGCTTTACTCGCTCTCCGTCCTGGCGGGCAGGTCCTGAGCACTGG
CACTTGCGGAGGTTTTTATGTCCATAAACAGGAATTGCCTCAGATCGACA
TGGACCCAGTGTCTGTGGGTACAGTACACTGGCGTATTTTTCCTGTACTG
TACCGAGATAAGGAGGGAACGGCCGCTGTAGTTTGCAGTCGCTCCATTTG
CGGTTGGCAGTCTGGTACTTGTATTAGTACTGGGGGGTTCATTCAGAGAG
CAGAACTGGGTCCAAGGTCTAGACTTGACAACGCTTGGCAGTGTTGCGCC
ATTCGCGCGCCATCGTACGGCGTTCATGTGCGCACGGTTATTCGACAGAA
TCGAGGACACAAGAGTCTTTCTTTTAAAGGTTGTAATGTGTGCCTTCATT
ACACCACGAGAGGGATCAGCAGCCACTTTTTCGCGATTGCAAAAAAGGCT
GTGAAAAAGGCTGGCCGGTCGATTGAAAGTGTGAAAATTAATCAGTCAAT
GGGTGCAGGCATCCTTACAATCCTCCTACGATGGAGAGAAATTGATTTGT
TGCCGGCGGACGCAGGCACGGAACCTGGAAAAGCAAAGTCAAGAGCCAAA
AGAGCTGGGCCGACGATGTGCCTCCTTCACCACTCCTCTACTCTGTAAGG
AGCAAGATATTAAGTGGGAGACTAACTTGTGTATAGCTCAAATTGGATTG
CGCGACAAGCAGATGAACAAAAAGTTACATGTATGATAGTACCAAGAAAG
CCGTCACTTTCCTTTGGATGACCTATTGTGAAGTATACTTGTAGCATGAA
AGTATTGTGTGGTATTTCACCTCATTTTTCTTTTATGTTAAGTTTTAGGG
TGCTGTGCAAGACGCCAGACTTGCCTCCTTACACTCTACAACTTCGCAGA
TCAGAATTATCCAGCGCCAACACCAAGCCGAGGAGGCCACACGCAGTGAA
ACCCAAGTACGGAGAAAGCAGCTCTGGAGGAACCGCAAAATTCTGGGTTG
CTGTACGCTGGGCACCTAGGGTGTAGATCGCTGACGCTGACAGGCGCAAC
AAGAGATCGCCACGACAGATTCCAACGAGCCCAAAGTGCTCCTCTTTCTG
ACTTTGGTGACGGCGAGTTTTTAATATATTGAACACACACGTCCCTGCCT
GCCAGCTCGTGAGAGCCAAAAAGAGGATCGGCCGCAGCACTAGATACCGA
CATGCAGGCAAGGAGCGCGGGGAGCCAAGGGGGGTTGGAGGGGTTTTCAA
AAATAGGAGCAACACGACGGGAGAGTCCTGCCAGAGGCCGACCGGCCAAA
GTAACAATTGACATGCAGGGCCCCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig92:8367..12392+

>mRNA_S-dermatodea_contig92.17262.1 ID=mRNA_S-dermatodea_contig92.17262.1|Name=mRNA_S-dermatodea_contig92.17262.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at S-dermatodea_contig92:8367..12392+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGATAGAGGCCTCGCCCTGTGCACCTGTCGCGCGGGAACGCTCTC
GGTGGGACTGAGAGCAGTAGCGCACCCTTTTCTCGGCAGCATCCCGTCCC
TGCGGGGCGGTCCTCCGGCGACCCGGCCGCCTCTGTCACGTCATCAACGG
ACCTTCAACAACATGTCGGTGGCTGCAGCAAAGAAGGCTGGTGCGGGGGA
CGACACAGCAGGACCAGCGGTGGCCGAAGCAGGATTTCGCGAGAAGAAGA
TGGCGCTGCGGAAGAGCATTAAGGCTGAGCTGAAGGCAATGAGCGAGTCT
GCGGTGGGCGCGGCGTCGACGGCGGTGGCGGAGCGATTGCTCGCGACTCC
GCAGTTGGCTGCCGGGAGCGGCGGCGGCGGGGGGGGGGTGAGCGTCTACT
TGTCCATGCCGGGTGAGCTGGGCACTGCGGCCATCGTGAGCGAGCTGTTC
AAGCGAGGGAAGAAGATCTACATCCCCAAGATGCTCGATAGAGGCCTCGC
CCTGTGCACCTGTCGCGCGGGAACGCTCTCGGTGGGACTGAGAGCAGTAG
CGCACCCTTTTCTCGGCAGCATCCCGTCCCTGCGGGGCGGTCCTCCGGCG
ACCCGGCCGCCTCTGTCACGTCATCAACGGACCTTCAACAACATGTCGGT
GGCTGCAGCAAAGAAGGCTGGTGCGGGGGACGACACAGCAGGACCAGCGG
TGGCCGAAGCAGGATTTCGCGAGAAGAAGATGGCGCTGCGGAAGAGCATT
AAGGCTGAGCTGAAGGCAATGAGCGAGTCTGCGGTGGGCGCGGCGTCGAC
GGCGGTGGCGGAGCGATTGCTCGCGACTCCGCAGTTGGCTGCCGGGAGCG
GCGGCGGCGGGGGGGGGGTGAGCGTCTACTTGTCCATGCCGGGTGAGCTG
GGCACTGCGGCCATCGTGAGCGAGCTGTTCAAGCGAGGGAAGAAGATCTA
CATCCCCAAGGTGCTAGGCCCAGCCTCTGCCGACATGCGGATGTTCCCCC
TGCAATCGGAAGAAGAGGTTGCCTCGTTCCCTCTCACCAAGTGGAAAATT
CCCGAGCCTTCCGCAGAGCTAGTTCTCTCGCGTGAAGACGGGGTGTTTAC
CGGCGACATCGACGTGGTCGTCGTGCCGGGGATGGCCTTCGACGAGCGGT
GTAATCGATTGGGCCACGGTAAAGGCTACTACGGTGCTAGGCCCAGCCTC
TGCCGACATGCGGATGTTCCCCCTGCAATCGGAAGAAGAGGTTGCCTCGT
TCCCTCTCACCAAGTGGAAAATTCCCGAGCCTTCCGCAGAGCTAGTTCTC
TCGCGTGAAGACGGGGTGTTTACCGGCGACATCGACGTGGTCGTCGTGCC
GGGGATGGCCTTCGACGAGCGGTGTAATCGATTGGGCCACGGTAAAGGCT
ACTACGATTGCTTCTTTGAACGCGTCAACAAGGCCAACGCGGAAAAAGGG
AAGCCACCACCCGTTACTTTGATTGCTTCTTTGAACGCGTCAACAAGGCC
AACGCGGAAAAAGGGAAGCCACCACCCGTTACTTTGGGTGTATGCTTCGA
CGAACAGGTGGTGGACTGCGTGCCGACATCTTCCACGGACGTTCCGCTAG
ATTTCGTCCTGACGCCGTCCCGCACGTTCCAACGCATCGCAGAAACGAAA
GACCCGTAAGGTGTATGCTTCGACGAACAGGTGGTGGACTGCGTGCCGAC
ATCTTCCACGGACGTTCCGCTAGATTTCGTCCTGACGCCGTCCCGCACGT
TCCAACGCATCGCAGAAACGAAAGACCCGTAA
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