mRNA_S-dermatodea_contig9197.17257.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9197.17257.1
Unique NamemRNA_S-dermatodea_contig9197.17257.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.400e-25
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPK-HAVEYKGDPLADFALMPFLDRMAYKNPKARDAKHGG 189
            LWEASLLRSHVHPSVSRFA+ L+S+ + HAV+YKGDPLAD ALMPFL+RMAYKNPKARD K+ G
Sbjct:  833 LWEASLLRSHVHPSVSRFADSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARDDKNQG 896
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A6H5JK74_9PHAE (CBF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK74_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.330e-25
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPK-HAVEYKGDPLADFALMPFLDRMAYKNPKARDAKHGG 189
            LWEASLLRSHVHPSVSRFA  L+S+ + HAV+YKGDPLAD ALMPFL+RMAYKNPKARD K+ G
Sbjct:   65 LWEASLLRSHVHPSVSRFAGSLVSKQQNHAVQYKGDPLADLALMPFLNRMAYKNPKARDDKNQG 128
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.880e-18
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPKARDAKHGG 189
            LWEA+ LR H HPSV+ FA  LL+ P H + YKGDPL DF LMPFLDR+AY+N K   A  GG
Sbjct:  869 LWEATQLRWHYHPSVAHFALELLTPPGHGIRYKGDPLVDFGLMPFLDRLAYRNAKQSAAPKGG 931
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A7R9Y8A0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8A0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.130e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPKARD 174
            L+E  +L  HVHPSV+ F+EG+L    H + Y+GDPL DFAL PFL+R A++NPK RD
Sbjct:  381 LFELGMLYKHVHPSVTAFSEGILLHVDHRLSYEGDPLKDFALGPFLNRFAFRNPKKRD 438
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A7S4K5P2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K5P2_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 6.970e-12
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    4 WEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPKARDAKHGGGV 195
            WE SLL SH HPSV ++AE LLS   + +EYKGDP+ D +L+ FLDR +++NPK +    GG  
Sbjct:   16 WELSLLVSHYHPSVRKWAE-LLSTG-NPIEYKGDPILDMSLIAFLDRYSFRNPKRKLTDKGGSA 77
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A7S3CJN7_9SPIT (Hypothetical protein n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CJN7_9SPIT)

HSP 1 Score: 65.9 bits (159), Expect = 4.500e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPKARD 174
            L+E + L +H HP+V  +A+ LL     AVEY GDPL DFAL  FLDR+AYK PK+++
Sbjct:   10 LFELATLSTHCHPTVRMWAQQLLDHQTIAVEYGGDPLLDFALSNFLDRIAYKEPKSQE 67
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: K0SQJ6_THAOC (CBF domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQJ6_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 1.830e-10
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPKARD 174
            LWE SLL  H HPS+++F     S     + YK DPL DFAL PFLD+ A++NPK+ D
Sbjct:  590 LWELSLLAHHFHPSITKFT----SNSDGKILYKEDPLKDFALAPFLDKFAFRNPKSLD 643
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A443S664_9ACAR (CCAAT/enhancer-binding protein zeta-like protein (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443S664_9ACAR)

HSP 1 Score: 63.5 bits (153), Expect = 3.380e-10
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPK 165
            LWE   L  H HP+V+ FA+ +L    +A+EY GDPLADF +  FLDR  Y+NPK
Sbjct:  273 LWETVNLSRHYHPTVALFADSVLRN--NAIEYDGDPLADFTIKNFLDRFVYRNPK 325
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A7R9Z0Z7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z0Z7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.940e-10
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPF 135
            LWE +LLR+H HPSV++FA  L     + VEY GDPL DFALMPF
Sbjct:   64 LWEVALLRTHFHPSVTKFATAL----PNPVEYSGDPLRDFALMPF 104
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BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Match: A0A2G8LPV8_STIJA (CBF domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LPV8_STIJA)

HSP 1 Score: 62.4 bits (150), Expect = 8.770e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    4 WEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMAYKNPKAR 171
            WE   L  H HPSVS+FAE +L+     + Y G+PL DF +M FL+R  YKNPK+R
Sbjct:  627 WELMKLAGHFHPSVSQFAEKILTG--ETIMYDGNPLDDFTIMKFLNRFVYKNPKSR 680
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9197.17257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI4.400e-2579.69CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JK74_9PHAE5.330e-2579.69CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZC94_9STRA8.880e-1861.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Y8A0_9STRA2.130e-1456.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4K5P2_9EUKA6.970e-1251.56Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S3CJN7_9SPIT4.500e-1153.45Hypothetical protein n=1 Tax=Strombidium rassoulza... [more]
K0SQJ6_THAOC1.830e-1051.72CBF domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A443S664_9ACAR3.380e-1052.73CCAAT/enhancer-binding protein zeta-like protein (... [more]
A0A7R9Z0Z7_9STRA6.940e-1062.22Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A2G8LPV8_STIJA8.770e-1051.79CBF domain-containing protein n=1 Tax=Stichopus ja... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9197contigS-dermatodea_contig9197:1372..1566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue9.3e-21
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925392.5097797-CDS-S-dermatodea_contig9197:1371..15661622925392.5097797-CDS-S-dermatodea_contig9197:1371..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9197 1372..1566 -
1694079902.7490287-CDS-S-dermatodea_contig9197:1371..15661694079902.7490287-CDS-S-dermatodea_contig9197:1371..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9197 1372..1566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9197.17257.1prot_S-dermatodea_contig9197.17257.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9197 1372..1566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9197.17257.1

>prot_S-dermatodea_contig9197.17257.1 ID=prot_S-dermatodea_contig9197.17257.1|Name=mRNA_S-dermatodea_contig9197.17257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
LWEASLLRSHVHPSVSRFAEGLLSRPKHAVEYKGDPLADFALMPFLDRMA
YKNPKARDAKHGGGV
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mRNA from alignment at S-dermatodea_contig9197:1372..1566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9197.17257.1 ID=mRNA_S-dermatodea_contig9197.17257.1|Name=mRNA_S-dermatodea_contig9197.17257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at S-dermatodea_contig9197:1372..1566- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTGGGAGGCATCTCTTTTGCGATCTCACGTGCACCCGTCGGTGTCGCG
GTTCGCGGAAGGCCTGCTCTCTCGGCCGAAGCACGCCGTCGAATACAAGG
GAGACCCTCTGGCGGATTTCGCCCTCATGCCCTTCCTGGATCGGATGGCG
TACAAGAACCCCAAGGCTAGGGACGCCAAGCACGGGGGAGGGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9197:1372..1566-

>mRNA_S-dermatodea_contig9197.17257.1 ID=mRNA_S-dermatodea_contig9197.17257.1|Name=mRNA_S-dermatodea_contig9197.17257.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig9197:1372..1566- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTGGGAGGCATCTCTTTTGCGATCTCACGTGCACCCGTCGGTGTCGCG
GTTCGCGGAAGGCCTGCTCTCTCGGCCGAAGCACGCCGTCGAATACAAGG
GAGACCCTCTGGCGGATTTCGCCCTCATGCCCTTCCTGGATCGGATGGCG
TACAAGAACCCCAAGGCTAGGGACGCCAAGCACGGGGGAGGGGTGCTCTG
GGAGGCATCTCTTTTGCGATCTCACGTGCACCCGTCGGTGTCGCGGTTCG
CGGAAGGCCTGCTCTCTCGGCCGAAGCACGCCGTCGAATACAAGGGAGAC
CCTCTGGCGGATTTCGCCCTCATGCCCTTCCTGGATCGGATGGCGTACAA
GAACCCCAAGGCTAGGGACGCCAAGCACGGGGGAGGGGTG
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