mRNA_S-dermatodea_contig9180.17244.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9180.17244.1
Unique NamemRNA_S-dermatodea_contig9180.17244.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: D8LEB1_ECTSI (Utp13 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB1_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 2.630e-123
Identity = 242/396 (61.11%), Postives = 274/396 (69.19%), Query Frame = 1
Query:  139 DKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVGVEDGDGSGSSATPGEGTKANRPLVSELKRLREGRRREGVARVGASGEDMSDSENSSSGSEDGEGRLRPVPVSEVVDGRVVFNVRLEAVDGMSAVDSSDDDDPQGDDAAGTVDVVMGDAVEH-PVAESRDKGTASPVSKPKKKRKKRENGLASPAPLGLAGQPPVD 1323
            DKVWAL TA AP  R    E+          G NAG+VVVSGGADSVINVWKDVTAREEEK+IAE+E  LLKEQELYNRLR+K+YGPAIALALELKRPQ+LW VLRDAMTEGMGEGG     GG +ETTTEM+SRRLD+HV+SW+M+TI+QCL YCRDWNTNARK+VVVHALVGS+LR  S+ SLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLV   +G  +G S      T+ NRPLV ELKRLR+G+ R+        G   SDSE        G+    PVPVSEVVDGRVVFNVR+E      A DS  +++          DVVMGDA +  P+                        G  +P  LGL GQP V+
Sbjct:  724 DKVWALTTAAAPAVRRHRDEEEEVEGGGE--GPNAGIVVVSGGADSVINVWKDVTAREEEKVIAERENALLKEQELYNRLRNKEYGPAIALALELKRPQKLWGVLRDAMTEGMGEGGQGAPAGGDEETTTEMASRRLDEHVSSWTMDTISQCLGYCRDWNTNARKAVVVHALVGSILRCVSIGSLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVA--EGGPTGDSNKAAARTQTNRPLVRELKRLRDGKPRQEEEGESVDGGVESDSEG-------GDRVASPVPVSEVVDGRVVFNVRVE---NGGAGDSDSEEEXX---XVQESDVVMGDASKRDPIVVEGGXXXXXXXXXXXXXXXXXXXGAPAPTALGLVGQPVVE 1102          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A7S4KJA0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KJA0_GUITH)

HSP 1 Score: 164 bits (414), Expect = 2.390e-43
Identity = 101/279 (36.20%), Postives = 152/279 (54.48%), Query Frame = 1
Query:   76 GLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVG----VEDGDGSGSSATPGEGTKANRPL 900
            GL+K+WT+++ EC A+L+ H DK+WALA A         GED                ++ +GGAD +IN W DVTA  E+K   E+E  L+ EQ++ N LR KDY  A  LA  LK+P  L  VL+  +TE                         LD+ + S++ E ++ CL Y RDWNT+AR +    A++ ++LR FSL  L E  G  ++V  LLPY++RHFQRL+  +Q +Y+++ TL +M+ ++G    ++D +    S  P   T+A R +
Sbjct:    1 GLLKLWTLKTSECVASLEQHEDKLWALAVA--------PGED---------------TLLATGGADGMINFWDDVTAEMEDKARQEQEENLVLEQQMMNALRAKDYKLAALLAFRLKKPFHLLQVLQSVITE--------------------KDEGLLDEIIVSFTSEQLSTCLQYLRDWNTSARNAHTSQAVLLAILRSFSLEQLCECEGIKDIVDSLLPYTQRHFQRLEDAMQRTYMLDFTLHAMRSVLGGSDKLDDEEXXXESLQPWRRTRARRAV 236          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: UPI00053FD269 (transducin beta-like protein 3 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FD269)

HSP 1 Score: 166 bits (421), Expect = 3.110e-40
Identity = 96/275 (34.91%), Postives = 149/275 (54.18%), Query Frame = 1
Query:    1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
            +GHT+SVL  +F++ G Q VS GADGL+K+WTV S+EC AT D H DKVWALA  +                           V+ +GG D+V+N+W D TA ++E+   ++E  +L+ QEL N + D DY  AI +A EL+RP+RL+ +L +   E                   + +   + K + +   E + Q   Y R+WNT  +   +   ++  V    S   + E+ G AEL+  L+PYS+RHF R+DRL +S++L+++TL  M ++
Sbjct:  573 EGHTSSVLRASFITRGTQFVSTGADGLLKLWTVTSNECIATYDEHEDKVWALAIGKKTE------------------------VLATGGGDAVVNLWSDSTAVDKEEAFRKEEEGVLRGQELENAVSDADYAKAIQIAFELRRPRRLFELLSELCRE-------------------KDAKDHMRKALQTLGKEEVRQLFEYIREWNTKPKLCHIAQFVLFQVFSMLSPKEIVEVKGVAELLEGLIPYSQRHFSRIDRLERSTFLLDYTLIGMSVI 804          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A0K9R6E2_SPIOL (Utp13 domain-containing protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9R6E2_SPIOL)

HSP 1 Score: 166 bits (419), Expect = 5.720e-40
Identity = 97/275 (35.27%), Postives = 146/275 (53.09%), Query Frame = 1
Query:    1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
            +GHT+SVL  +F++ G Q VS GADGL+K+WTV+S+EC AT D H DKVWALA  +                           ++ +GG D+VIN+W D TA E+E+   ++E  +L+ QEL N + D DY  AI +A EL+RP RL+ +L +   +                   + +   L K +     E + Q   Y R+WNT  R       ++  V    S   + E+ G  EL+  L+PYS+RHF R+DRL +S++L+++TL  M ++
Sbjct:  573 EGHTSSVLRASFITRGTQFVSSGADGLLKLWTVKSNECIATYDEHEDKVWALAIGKKTE------------------------MLATGGGDAVINIWNDSTAAEKEEAFRKEEEGVLRGQELENAVSDADYAKAIQIAFELRRPHRLYELLSELCRK-------------------KDAVDHLRKALLHLRKEEVQQLFEYIREWNTKPRLCHNAQFVLFQVFSMLSPTDIVEVKGIGELLEGLIPYSQRHFSRIDRLERSTFLLDYTLVGMSVI 804          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA)

HSP 1 Score: 166 bits (419), Expect = 9.560e-40
Identity = 136/436 (31.19%), Postives = 182/436 (41.74%), Query Frame = 1
Query:    1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVG--SGEDGXXXXXXXXGGA----NAGLVVVSGGADSVINV------WKDVT--------------------------------------------------------AREEE----------------------KLIAEKEAT----------------------------LLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEG--GGTEV-------VGGGDET------------------------------TTEMSS---RRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLV 828
            +GHTA VL+  FVS GAQL+SGGADGLVK+WT+R+ ECE T D H D+ WA+A  +    +    +  D         GGA    N  + +++GGAD V+        W D T                                                        AR  E                       L+  K  T                            LLKEQ L N LR++++  A ALA ELKRP RLW+V++D + E         TE+       V G  E                               + E+S      +D  V  W  E I  CLSYCRDWNTNA+ + V  A++ ++LR   L  L ++  C+E++  LLPYSERH+QRLDRLLQS+YLV++TLA M+ML+
Sbjct:  657 QGHTAGVLNCEFVSGGAQLLSGGADGLVKLWTIRTSECEGTFDRHNDRAWAMALIKKTHNKSDGDTAVDNSTASRAGIGGALATVNGDVELITGGADRVLTCIERCFSWCDCTTATDMLALCXXXXXXXXXXXXXXXXXXXXXXXXXXXYHRKLTGLQYFYYRLSGSCCARSAEAISYRCLHFGNGNAWPKQGLGASLVCPKAHTVGQSGRGGSQGLHTQTNDLHRCFLMQEDLLKEQSLANSLRERNFKRAAALAFELKRPNRLWAVIKDMLAEAEKTAYEAATELCTHFEVYVAGAQENPMLSNACPYFYVRVLKQQLQVSSLPMQELESDELSDAGRESMDALVNHWDEEQIKTCLSYCRDWNTNAKTAAVAQAVITALLRCIGLERLSQVETCSEVLEALLPYSERHYQRLDRLLQSTYLVDYTLAGMRMLL 1092          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A388JWY6_CHABU (Utp13 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JWY6_CHABU)

HSP 1 Score: 164 bits (416), Expect = 1.870e-39
Identity = 104/278 (37.41%), Postives = 153/278 (55.04%), Query Frame = 1
Query:   13 ASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVGVEDGD 846
            AS LS A    G  ++  GADGLVK+WT+RS+EC  T D H DK+WAL         V S ++                ++ +GG+D+++N+W D TA EEE+   + E  LLK+Q+L N L   ++G AI L  ELKRPQ+L     + +  G G     EV+G            + DK         + QCL Y R+WNTN+R   V   ++ SVL    +  L E+PG  EL+  L+PYS RHF+RLDRL++S++++++TL+ M +L  + + D
Sbjct:  580 ASTLSDAAGFLGIAVLLLGADGLVKLWTIRSNECVNTFDYHNDKIWALT--------VNSKQE----------------MIATGGSDALVNLWADFTAAEEEEAERQAEEELLKDQDLSNALSSGEFGRAIELGFELKRPQKLLHTFAELVRAGTGREILLEVLG------------KFDKL-------RLRQCLEYVREWNTNSRYCHVAQYILQSVLEAHPMKELLEVPGMKELLVALIPYSSRHFKRLDRLVRSTFILDYTLSCMSVLFPMNEED 814          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A8J4QM25_9ROSI (Utp13 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4QM25_9ROSI)

HSP 1 Score: 152 bits (385), Expect = 1.690e-37
Identity = 91/274 (33.21%), Postives = 142/274 (51.82%), Query Frame = 1
Query:    4 GHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
            GHT+SVL  +F++ G Q VS GADGLVK+WTV+++EC AT D H DKVWALA  +                           ++ +GG D+VIN+W D T+ ++E+   ++E  +LK QEL N + D DY  AI +A EL+RP +L+ +  +   +   E                    ++DK + +           Y R+WNT  +   V   ++  V        + E+ G  EL+  L+PYS RHF R+DR ++S++L+++TL  M ++
Sbjct:   94 GHTSSVLRASFLTRGTQFVSCGADGLVKLWTVKTNECIATYDKHEDKVWALAIGKKTE------------------------MLATGGGDAVINLWYDCTSDDKEEAFRKEEEGVLKGQELENAVSDADYTKAIQIAFELRRPHKLFELFAELFRKREAE-------------------NQMDKALNAIGKGEFRLLFEYVREWNTKPKLCHVAQFVLFRVFNILPPTEIIEIKGMGELLEGLIPYSHRHFSRIDRHVRSTFLLDYTLTGMSVI 324          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: UPI0004422A2C (transducin beta-like protein 3 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI0004422A2C)

HSP 1 Score: 146 bits (368), Expect = 1.030e-36
Identity = 98/274 (35.77%), Postives = 143/274 (52.19%), Query Frame = 1
Query:    1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQM 822
            +GH ASVL V FVS G Q++S GADGL+K+WT++++EC  TLDAH DKVW L   +         +D                 VV+G  DS + +WKDVT  E E+  A++E  +LK+QEL N L  K +  A+ LA+ L RP  + +V++  + E           GG ++    ++  R D+  A          L +   WNTN R      A+V  +L+  S   L +  G    V  LLPY+ERH+QRL RLLQ+S  ++    +M++
Sbjct:    3 EGHDASVLKVIFVSGGGQVLSSGADGLLKLWTIKNNECVKTLDAHEDKVWGLHANKK--------DD----------------TVVTGSTDSRVLLWKDVTQAELEEEQAKQEEQILKDQELANLLHKKQFLKALGLAISLDRPHTVLTVVKAILKE----------PGGKEDLAKNLTKLRKDQKEA---------VLKFSVTWNTNTRNCHEAQAVVEILLKHESPEDLLKYEGIKTAVESLLPYTERHYQRLGRLLQASMFLDFMWQNMRL 233          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A2Z7BXM5_9LAMI (Transducin beta-like protein 3 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BXM5_9LAMI)

HSP 1 Score: 154 bits (388), Expect = 5.410e-36
Identity = 88/256 (34.38%), Postives = 137/256 (53.52%), Query Frame = 1
Query:   58 VSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQML 825
            +S GADGLVK+WTV+++EC AT D H DK+WALA  R                           ++ +GG D+VIN+W D TA ++E+   ++E  +L+ QEL N + D DY  A+ LA EL+RP +L+ +  +   +  G+                    +++K V S S E + + L Y RDWNT  +   V H ++ S+        + E+ G  EL+  L+PY++RHF R+DRL  +++L ++TLA M +L
Sbjct:  569 ISDGADGLVKLWTVKTNECVATYDQHEDKIWALAIGRKTE------------------------MIATGGGDAVINLWHDSTATDKEEAFRKEEEGVLRGQELENAIFDADYLKAVQLAFELRRPHKLFELFSELCRKSDGKS-------------------QIEKAVCSLSKEELHKLLEYTRDWNTKPKLCHVAHFVLSSLFSIIPPTEIIEIKGIGELLEGLIPYTQRHFSRVDRLESNTFLFDYTLAGMSVL 781          
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Match: A0A8C1D8Q1_CYPCA (Transducin (beta)-like 3 n=5 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1D8Q1_CYPCA)

HSP 1 Score: 148 bits (373), Expect = 5.100e-34
Identity = 96/279 (34.41%), Postives = 145/279 (51.97%), Query Frame = 1
Query:    1 KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVWALATARAPRRRVGSGEDGXXXXXXXXGGANAGLVVVSGGADSVINVWKDVTAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSVLRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLSYCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSERHFQRLDRLLQSSYLVEHTLASMQMLVGVE 837
            +GH ASVL + FVS G QLVS G+DGLVK+WT++++EC  T DAH DKVWAL          GS +D                ++V+G ADS I +WKDVT  E  +  A++E  +LK+QEL N L +K Y  A+ +A+ L +P     V+R+   +                   E   + L+K +     +  A  L Y   WNTN+R  +   A++  +L   S   + +  G    +  L+PY+ERH QR+ RLLQ+S  +++    M++  G++
Sbjct:  548 EGHDASVLKIIFVSRGTQLVSSGSDGLVKLWTIKTNECVKTFDAHQDKVWAL--------HGGSKDD----------------LMVTGSADSTITLWKDVTEVELAEEQAKQEDQVLKQQELSNLLHEKKYLKALGIAISLDQPHTALRVIREIRQQ-------------------EDGIQELEKTLLKLRQDQKASVLRYSVVWNTNSRSCLDAQAVLQVLLTHLSPEEILQYQGTRTHLEGLIPYTERHMQRISRLLQASMFLDYMWQKMRITGGID 783          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9180.17244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB1_ECTSI2.630e-12361.11Utp13 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S4KJA0_GUITH2.390e-4336.20Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
UPI00053FD2693.110e-4034.91transducin beta-like protein 3 n=1 Tax=Beta vulgar... [more]
A0A0K9R6E2_SPIOL5.720e-4035.27Utp13 domain-containing protein n=3 Tax=Chenopodio... [more]
A0A836CIZ1_9STRA9.560e-4031.19Utp13 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A388JWY6_CHABU1.870e-3937.41Utp13 domain-containing protein n=1 Tax=Chara brau... [more]
A0A8J4QM25_9ROSI1.690e-3733.21Utp13 domain-containing protein n=1 Tax=Castanea m... [more]
UPI0004422A2C1.030e-3635.77transducin beta-like protein 3 n=1 Tax=Python bivi... [more]
A0A2Z7BXM5_9LAMI5.410e-3634.38Transducin beta-like protein 3 n=1 Tax=Dorcoceras ... [more]
A0A8C1D8Q1_CYPCA5.100e-3434.41Transducin (beta)-like 3 n=5 Tax=Cyprinus carpio T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9180contigS-dermatodea_contig9180:4112..8617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score404.1
Seed ortholog evalue1.1e-109
Seed eggNOG ortholog2880.D8LEB1
Preferred nameTBL3
KEGG koko:K14555
KEGG Pathwayko03008,map03008
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Transducin beta-like protein 3
EggNOG OGsKOG0319@1,KOG0319@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_001580.1
Exons4
Model size1644
Cds size1644
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9180.17244.1prot_S-dermatodea_contig9180.17244.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9180 4112..8617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.6479053-CDS-S-dermatodea_contig9180:4111..50501622925391.6479053-CDS-S-dermatodea_contig9180:4111..5050Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 4112..5050 -
1694079902.196534-CDS-S-dermatodea_contig9180:4111..50501694079902.196534-CDS-S-dermatodea_contig9180:4111..5050Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 4112..5050 -
1622925391.6604035-CDS-S-dermatodea_contig9180:5959..61471622925391.6604035-CDS-S-dermatodea_contig9180:5959..6147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 5960..6147 -
1694079902.2115228-CDS-S-dermatodea_contig9180:5959..61471694079902.2115228-CDS-S-dermatodea_contig9180:5959..6147Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 5960..6147 -
1622925391.6747239-CDS-S-dermatodea_contig9180:6921..71231622925391.6747239-CDS-S-dermatodea_contig9180:6921..7123Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 6922..7123 -
1694079902.2274685-CDS-S-dermatodea_contig9180:6921..71231694079902.2274685-CDS-S-dermatodea_contig9180:6921..7123Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 6922..7123 -
1622925391.691282-CDS-S-dermatodea_contig9180:8302..86171622925391.691282-CDS-S-dermatodea_contig9180:8302..8617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 8303..8617 -
1694079902.237305-CDS-S-dermatodea_contig9180:8302..86171694079902.237305-CDS-S-dermatodea_contig9180:8302..8617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9180 8303..8617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9180.17244.1

>prot_S-dermatodea_contig9180.17244.1 ID=prot_S-dermatodea_contig9180.17244.1|Name=mRNA_S-dermatodea_contig9180.17244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=548bp
KGHTASVLSVAFVSAGAQLVSGGADGLVKVWTVRSDECEATLDAHTDKVW
ALATARAPRRRVGSGEDGEGEEGDGRGGANAGLVVVSGGADSVINVWKDV
TAREEEKLIAEKEATLLKEQELYNRLRDKDYGPAIALALELKRPQRLWSV
LRDAMTEGMGEGGGTEVVGGGDETTTEMSSRRLDKHVASWSMETIAQCLS
YCRDWNTNARKSVVVHALVGSVLRRFSLASLKELPGCAELVRVLLPYSER
HFQRLDRLLQSSYLVEHTLASMQMLVGVEDGDGSGSSATPGEGTKANRPL
VSELKRLREGRRREGVARVGASGEDMSDSENSSSGSEDGEGRLRPVPVSE
VVDGRVVFNVRLEAVDGMSAVDSSDDDDPQGDDAAGTVDVVMGDAVEHPV
AESRDKGTASPVSKPKKKRKKRENGLASPAPLGLAGQPPVDEEPSAPPTA
AAAAAADEVVSGAEGEGGEVSGSGKKRRKKRKKSSSAVVVEETTSPDGAQ
PPAVVVAEQGERGVEEGEGAVAEEGGSGRKKKKRSGKGRRSKESQAV*
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mRNA from alignment at S-dermatodea_contig9180:4112..8617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9180.17244.1 ID=mRNA_S-dermatodea_contig9180.17244.1|Name=mRNA_S-dermatodea_contig9180.17244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4506bp|location=Sequence derived from alignment at S-dermatodea_contig9180:4112..8617- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGCCACACGGCATCCGTCCTCAGCGTAGCCTTCGTCAGCGCCGGCGC TCAGCTAGTGTCGGGCGGCGCGGACGGCTTGGTCAAGGTCTGGACCGTGC GGTCGGACGAGTGCGAGGCCACCCTCGACGCCCACACCGACAAGGTCTGG GCGCTCGCAACCGCAAGGGCGCCGAGACGCCGCGTCGGGAGTGGCGAGGA CGGGGAGGGTGAGGAGGGGGACGGCCGGGGTGGCGCAAACGCGGGTCTGG TTGTGGTGAGCGGAGGTGCGGATTCGGTGATCAACGTGTGGAAGGACGTG ACGGCGAGGGAAGAGGTGCGTTGCGTTGATTTTCATGTTTGTGGTTTGTT TTTGTTTGTTCGGTTGGGGCGATCGTTTGATTGATTGATTCGCTCTTCGT GATATTTTGGAAAGGCGGCCGGGGGGAGGGGGCAATGACATCATGAATGG CACAAAACCATACCATTATACTTGTTCGCTACGCAGGCCTCCATAGGTGT ACTGTGTCTTGGACCATCTTCCCCTTGTTGAAAGGTGGGACTCCGACGCT ATTACTATTTAGCTCTATGTCCTGAAAATCTGGTTGTTTTTTTCACGGGA GGGGAGGGAAGCGGGGGGGGGGGGGGGGGGGGAGAAGAAAAAAACTCCTA AAAAAAACAAAGGGGGGGTGGTTTATTTTTTGTGGTTGTGTGTTGTGTGT GGGATTTATTTTTTTTTTTTTATTCTCTCAAAAAAAAAAAACNNNNNNNN NNTGGTGCAGGGGTGGCTGCGCTGTGTTTTTTTTTGTTTTGCGTGGTTGT GGTGGGGTTTGTGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGAGTAGCATCATACCTCGAAGTACATCCAACGTGCGTGTACTGT ACTGTTGACTGTTGTAGCTTGCTTGGACCGTCATATTTTATATTTCATCC CTTCAAGAAAGGAAAACCCCAGTGCAAAATGCTCGGGCTCTGGTTTTGAC ACCATTCGCTTGTATTAATATAATGGTGTTTTCACGGGGGGCATGTACAA GGTTTTTTGACGACGTGTGTGGGGTGGTCCGGGGCTCGGTATGTCCAATC AACCCATGGCATGCCGTTTGGCGTCGCAAACGCAAGGGTGATGGCCAGCA GCAGCTGGTACGATCCTTGTGAAACGCAGCCTGGCCGGCGAAAACCCGGC TTATCGCTCCGTCTCGGTGGTCTTATGTTCGTCCGGATACCACATGCGTC AAATATAAGTACACCCTCCCTTCCCCCCGGCCGCCCGCCCGCGCAATAAA CATAACGATTTCAAAGGCTAGAGCGAGCGTTGGGGTCCAGTGTTCTCAAA GGGGAAGACGGACGAAGCTGTTAAACACACCTATGGAGGCTCACTTGCTG CATATGATGTTATGGTTTAATGTAATACATGGCGTTATACTTCAAGTATA TGATTAACCCCCCCCTCCCCCTCTGTTTTCGTTTTTGGTGGCAGGAAAAA CTTATCGCCGAAAAAGAAGCTACCCTGCTGAAGGAGCAAGAGCTGTACAA CCGCCTCAGGGACAAGGACTACGGCCCGGCCATAGCCCTCGCGCTGGAGC TGAAGCGCCCGCAGCGGCTCTGGAGCGTCCTGAGAGACGCCATGACTGAG GGGATGGGAGAAGGCGGCGGGACGGAGGTGGTTGGTGGGGGCGATGGTGA GATACTTTTGAAGTGCGCATGACCTGTGGAGAGGCGATGGAGCATTGTCG GAGTCCGAGTTCTCTTCTAGCGTTTTTCTATATCTAGGGTACCATTTATT ATTTCTTGTACCGTAGTTAGTACCAGGGACGGTACGGTGTATAGTAGAAG TNNNNNNNNNNGACTTTTTGCGTATCTGACCACAAATCCGGTCGGATTAA GCCGATCGGCTATACGTGTGCAAATCAATCAATCAAGATACCTTACTCAG AGAGTAAAGGACGTACCTGGTATTGTTTTACTGTACTCCACCTACTTTCG GTTTCCAGTGGAAGTAGGCCTGTGAGTTAAGGATGTTGTACATGTGAACT AGATTTTGTTTTTTATAAAATAAAAAATAAAATCTTAGTAAGTATTAATC CTGTAAAGGTACAACATCGTTGTTGTACCCTGACTCGTTTGACTCGCAAA TGTATGTGGTGATAAAATTAAAAAAAAAACTCGCGTGTACATTCTGCAAT GATGGATAAGATACCTAAGATACCATAAAATAAAATAAAATAAAAATTAG CATCATATGTGTGACATAAATAAACCATAGCATCACACGCAACACAAGCC TTCACAGGTGTGTAGCTTGGACCATCTTCCCTTTTGAAAAGGTGAGATCC CAACGCTCGCTCTTATGTCTTTGAATTCGTTTCATTTTGTCGGGTTGAAT CTTGACTCGTTTCGCTTGGCGTTTCGTGCCTCTAATTGCTTTGACGTCCC CGCCCGCGCCTCGTCCGCAGAAACCACGACGGAGATGTCCTCGCGCCGCC TGGACAAGCACGTGGCCTCCTGGAGCATGGAGACGATCGCTCAGTGCCTG AGCTACTGCCGTGACTGGAACACCAACGCTAGGAAATCGGTCGTGGTGCA CGCGCTCGTCGGCAGCGTCCTCCGTCGCTTCAGCCTCGCTTCGCTGAAGG AGCTGCCGGTGAGCGCAGCGTGGTGTATTGTGTGGATAACTGGGTCAATC ATGTTATCATGGCTGGGATATTAGTCCTGGTTGATTATAAGTCGGGTCGG ATTCCGCACGATCGGCTAGAGTATACAGTAGTAGTTGTGCAAATCAAATA CACAATACACCAATAAATCAATCAATCAACTCAATTTTGTATTTGTATTT GTCTGTTCCCCTCCGTAGTACTTCACTGTGCACACCGCTCTGAGCGCTTC AAGTTTTTTTTTTTTTTTTTTATCTCTCGGGTCTTTTAGCTCCGACATGC TAATAATAGCGCTATTTTATTAACTCTTGGTCTTCGAATGCGCAGCCTTC GCTTTGCTGCACTATTTTGGACTTTTATACAAGTGTGCGGTCGAAGGTGG TGACGAACCTATAACCTGTCCCCCACAACAGAGAGAGAGGCGCAAGCAAT TCAATTCCGACTCCTGATCTGTGTGTGTGTTTGTGTGTGTGTGAGTTAAT TTTTTAATTTTTTGCTTGTACATGTATGCCACGTCCTACAAGCAGCTGTG TCGTATGATGTGTAAGACTATTTTTATGACTGGCTTCTGACTTACAGAAT TGCATTTTTCCTTTGTGCAGGCTGGCTTCAAGTCGGGTCGGGTCGGGCTT CCACCCGATCGGCTTTTTTATATAGAAACAAAACACAGAAAGTGCACAAC CCATACTCATAACTCATCGGGACAGGACCCGAGTGGACTTTGTTGTGCAC AAAACTGAGATACTCGCTGTGGAATCAATCACTAAATCAACCAATACACC TAAAAATTGTATCCAACAATTTCCAACACCTTAACCCCCTCCCCCTCCCC ATCTCCACCCCCCCTCGCATGTGAATGTTTTATCCAACACCGTTTGTCAC CCCGGACCTCGAATCAGGGCTGCGCCGAGCTGGTGCGCGTCTTGCTACCT TACTCAGAGCGACACTTCCAGCGCCTAGACCGCCTCCTCCAGTCGTCCTA CCTAGTCGAGCACACGCTCGCCTCCATGCAGATGCTCGTCGGGGTGGAGG ACGGAGACGGCTCGGGCTCTTCGGCGACGCCCGGGGAGGGGACGAAAGCT AACCGTCCCCTGGTGTCTGAGCTGAAACGCCTCCGCGAAGGTCGACGACG AGAGGGAGTCGCACGCGTCGGTGCGAGTGGTGAAGATATGAGCGATAGCG AGAACAGCAGCAGCGGTAGCGAGGACGGGGAGGGCCGTCTGCGGCCGGTT CCGGTGTCCGAGGTCGTCGACGGACGAGTGGTTTTCAACGTGAGGCTGGA GGCGGTTGACGGCATGAGCGCTGTAGACAGCAGCGACGACGACGATCCCC AAGGAGATGACGCCGCTGGTACGGTGGACGTAGTCATGGGCGATGCGGTA GAACACCCTGTTGCGGAAAGTAGAGATAAAGGCACCGCCTCTCCTGTGTC GAAACCCAAGAAAAAACGCAAGAAACGAGAGAATGGTCTCGCCTCCCCCG CTCCCCTGGGGCTCGCCGGGCAGCCGCCCGTCGACGAGGAGCCATCGGCC CCACCAACGGCTGCCGCAGCTGCAGCCGCGGACGAAGTTGTCAGTGGTGC GGAGGGGGAAGGGGGGGAGGTGAGCGGATCCGGAAAAAAGAGAAGGAAGA AGCGAAAAAAGAGCTCTTCCGCGGTTGTCGTGGAGGAGACGACGAGTCCC GACGGCGCGCAGCCTCCTGCCGTCGTGGTGGCGGAGCAGGGAGAGCGAGG GGTTGAGGAGGGGGAGGGGGCGGTGGCGGAGGAGGGGGGAAGTGGCAGGA AGAAAAAGAAGAGGTCTGGTAAGGGTCGACGGAGTAAGGAGTCTCAAGCG GTGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9180:4112..8617-

>mRNA_S-dermatodea_contig9180.17244.1 ID=mRNA_S-dermatodea_contig9180.17244.1|Name=mRNA_S-dermatodea_contig9180.17244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3288bp|location=Sequence derived from alignment at S-dermatodea_contig9180:4112..8617- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGCCACACGGCATCCGTCCTCAGCGTAGCCTTCGTCAGCGCCGGCGC
TCAGCTAGTGTCGGGCGGCGCGGACGGCTTGGTCAAGGTCTGGACCGTGC
GGTCGGACGAGTGCGAGGCCACCCTCGACGCCCACACCGACAAGGTCTGG
GCGCTCGCAACCGCAAGGGCGCCGAGACGCCGCGTCGGGAGTGGCGAGGA
CGGGGAGGGTGAGGAGGGGGACGGCCGGGGTGGCGCAAACGCGGGTCTGG
TTGTGGTGAGCGGAGGTGCGGATTCGGTGATCAACGTGTGGAAGGACGTG
ACGGCGAGGGAAGAGAAGGGCCACACGGCATCCGTCCTCAGCGTAGCCTT
CGTCAGCGCCGGCGCTCAGCTAGTGTCGGGCGGCGCGGACGGCTTGGTCA
AGGTCTGGACCGTGCGGTCGGACGAGTGCGAGGCCACCCTCGACGCCCAC
ACCGACAAGGTCTGGGCGCTCGCAACCGCAAGGGCGCCGAGACGCCGCGT
CGGGAGTGGCGAGGACGGGGAGGGTGAGGAGGGGGACGGCCGGGGTGGCG
CAAACGCGGGTCTGGTTGTGGTGAGCGGAGGTGCGGATTCGGTGATCAAC
GTGTGGAAGGACGTGACGGCGAGGGAAGAGGAAAAACTTATCGCCGAAAA
AGAAGCTACCCTGCTGAAGGAGCAAGAGCTGTACAACCGCCTCAGGGACA
AGGACTACGGCCCGGCCATAGCCCTCGCGCTGGAGCTGAAGCGCCCGCAG
CGGCTCTGGAGCGTCCTGAGAGACGCCATGACTGAGGGGATGGGAGAAGG
CGGCGGGACGGAGGTGGTTGGTGGGGGCGATGGAAAAACTTATCGCCGAA
AAAGAAGCTACCCTGCTGAAGGAGCAAGAGCTGTACAACCGCCTCAGGGA
CAAGGACTACGGCCCGGCCATAGCCCTCGCGCTGGAGCTGAAGCGCCCGC
AGCGGCTCTGGAGCGTCCTGAGAGACGCCATGACTGAGGGGATGGGAGAA
GGCGGCGGGACGGAGGTGGTTGGTGGGGGCGATGAAACCACGACGGAGAT
GTCCTCGCGCCGCCTGGACAAGCACGTGGCCTCCTGGAGCATGGAGACGA
TCGCTCAGTGCCTGAGCTACTGCCGTGACTGGAACACCAACGCTAGGAAA
TCGGTCGTGGTGCACGCGCTCGTCGGCAGCGTCCTCCGTCGCTTCAGCCT
CGCTTCGCTGAAGGAGCTGCCGAAACCACGACGGAGATGTCCTCGCGCCG
CCTGGACAAGCACGTGGCCTCCTGGAGCATGGAGACGATCGCTCAGTGCC
TGAGCTACTGCCGTGACTGGAACACCAACGCTAGGAAATCGGTCGTGGTG
CACGCGCTCGTCGGCAGCGTCCTCCGTCGCTTCAGCCTCGCTTCGCTGAA
GGAGCTGCCGGGCTGCGCCGAGCTGGTGCGCGTCTTGCTACCTTACTCAG
AGCGACACTTCCAGCGCCTAGACCGCCTCCTCCAGTCGTCCTACCTAGTC
GAGCACACGCTCGCCTCCATGCAGATGCTCGTCGGGGTGGAGGACGGAGA
CGGCTCGGGCTCTTCGGCGACGCCCGGGGAGGGGACGAAAGCTAACCGTC
CCCTGGTGTCTGAGCTGAAACGCCTCCGCGAAGGTCGACGACGAGAGGGA
GTCGCACGCGTCGGTGCGAGTGGTGAAGATATGAGCGATAGCGAGAACAG
CAGCAGCGGTAGCGAGGACGGGGAGGGCCGTCTGCGGCCGGTTCCGGTGT
CCGAGGTCGTCGACGGACGAGTGGTTTTCAACGTGAGGCTGGAGGCGGTT
GACGGCATGAGCGCTGTAGACAGCAGCGACGACGACGATCCCCAAGGAGA
TGACGCCGCTGGTACGGTGGACGTAGTCATGGGCGATGCGGTAGAACACC
CTGTTGCGGAAAGTAGAGATAAAGGCACCGCCTCTCCTGTGTCGAAACCC
AAGAAAAAACGCAAGAAACGAGAGAATGGTCTCGCCTCCCCCGCTCCCCT
GGGGCTCGCCGGGCAGCCGCCCGTCGACGAGGAGCCATCGGCCCCACCAA
CGGCTGCCGCAGCTGCAGCCGCGGACGAAGTTGTCAGTGGTGCGGAGGGG
GAAGGGGGGGAGGTGAGCGGATCCGGAAAAAAGAGAAGGAAGAAGCGAAA
AAAGAGCTCTTCCGCGGTTGTCGTGGAGGAGACGACGAGTCCCGACGGCG
CGCAGCCTCCTGCCGTCGTGGTGGCGGAGCAGGGAGAGCGAGGGGTTGAG
GAGGGGGAGGGGGCGGTGGCGGAGGAGGGGGGAAGTGGCAGGAAGAAAAA
GAAGAGGTCTGGTAAGGGTCGACGGAGTAAGGAGTCTCAAGCGGTGTAAG
GCTGCGCCGAGCTGGTGCGCGTCTTGCTACCTTACTCAGAGCGACACTTC
CAGCGCCTAGACCGCCTCCTCCAGTCGTCCTACCTAGTCGAGCACACGCT
CGCCTCCATGCAGATGCTCGTCGGGGTGGAGGACGGAGACGGCTCGGGCT
CTTCGGCGACGCCCGGGGAGGGGACGAAAGCTAACCGTCCCCTGGTGTCT
GAGCTGAAACGCCTCCGCGAAGGTCGACGACGAGAGGGAGTCGCACGCGT
CGGTGCGAGTGGTGAAGATATGAGCGATAGCGAGAACAGCAGCAGCGGTA
GCGAGGACGGGGAGGGCCGTCTGCGGCCGGTTCCGGTGTCCGAGGTCGTC
GACGGACGAGTGGTTTTCAACGTGAGGCTGGAGGCGGTTGACGGCATGAG
CGCTGTAGACAGCAGCGACGACGACGATCCCCAAGGAGATGACGCCGCTG
GTACGGTGGACGTAGTCATGGGCGATGCGGTAGAACACCCTGTTGCGGAA
AGTAGAGATAAAGGCACCGCCTCTCCTGTGTCGAAACCCAAGAAAAAACG
CAAGAAACGAGAGAATGGTCTCGCCTCCCCCGCTCCCCTGGGGCTCGCCG
GGCAGCCGCCCGTCGACGAGGAGCCATCGGCCCCACCAACGGCTGCCGCA
GCTGCAGCCGCGGACGAAGTTGTCAGTGGTGCGGAGGGGGAAGGGGGGGA
GGTGAGCGGATCCGGAAAAAAGAGAAGGAAGAAGCGAAAAAAGAGCTCTT
CCGCGGTTGTCGTGGAGGAGACGACGAGTCCCGACGGCGCGCAGCCTCCT
GCCGTCGTGGTGGCGGAGCAGGGAGAGCGAGGGGTTGAGGAGGGGGAGGG
GGCGGTGGCGGAGGAGGGGGGAAGTGGCAGGAAGAAAAAGAAGAGGTCTG
GTAAGGGTCGACGGAGTAAGGAGTCTCAAGCGGTGTAA
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