mRNA_S-dermatodea_contig9173.17234.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9173.17234.1
Unique NamemRNA_S-dermatodea_contig9173.17234.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9173.17234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9173contigS-dermatodea_contig9173:1167..3758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.9971886-CDS-S-dermatodea_contig9173:1166..12401622925390.9971886-CDS-S-dermatodea_contig9173:1166..1240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9173 1167..1240 +
1694079901.7484653-CDS-S-dermatodea_contig9173:1166..12401694079901.7484653-CDS-S-dermatodea_contig9173:1166..1240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9173 1167..1240 +
1622925391.0090914-CDS-S-dermatodea_contig9173:3573..37571622925391.0090914-CDS-S-dermatodea_contig9173:3573..3757Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9173 3574..3757 +
1694079901.7611413-CDS-S-dermatodea_contig9173:3573..37571694079901.7611413-CDS-S-dermatodea_contig9173:3573..3757Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9173 3574..3757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9173.17234.1prot_S-dermatodea_contig9173.17234.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9173 1167..3757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9173.17234.1

>prot_S-dermatodea_contig9173.17234.1 ID=prot_S-dermatodea_contig9173.17234.1|Name=mRNA_S-dermatodea_contig9173.17234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
EPLRRAPPLARSPATPRARGLASRRQFYTRRVAQENEDRMASGTLGVDTS
KRVQGWLQNELAERDAKLVRTGAEELLLLRSRPSTP
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mRNA from alignment at S-dermatodea_contig9173:1167..3758+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9173.17234.1 ID=mRNA_S-dermatodea_contig9173.17234.1|Name=mRNA_S-dermatodea_contig9173.17234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2592bp|location=Sequence derived from alignment at S-dermatodea_contig9173:1167..3758+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACCGCTGCGACGAGCACCACCGCTTGCTCGCTCTCCCGCAACTCCGAG
AGCGCGGGGTTTAGCATCTCGCAGGTGAGCGCATGCGCGATGAGTGGATC
TCTTGAAAGGTCACGCGCGGGACGGGTGGGTGGGTACCGGTGAGTTGGAG
CGTGTATCATTATACTTGTATGCGATGTACAGTATGTCTGGCCCTGGGAG
GCTTTCTCCCTCTGCTTCGGTCACGGTGGGCCCCGTGAAGAGGTATCCAG
AGTTGCCCTCGTGCGCCACCGCTGGCCTTGGGCCAAGCCAAAGCCCGCCT
CCGATCTTTCCTTTCTTAGCCACCCCGCCCCACGGAACGGCCGCGGCACT
TATCGTGCTCGCGCGCTACCCTTGTAATCGGCATCTGTGTGTTTGTGTAG
ACAGAGCTGGTCTGTACACGAGACCTCGGGCAATGATGAAACCGCGCGAG
TCCGTAGACATGGGTTGGGTGGGTGTACGCTGAGTTGTGGTCCGATGCCA
CGCGCCTCGAGAGCTCCTTGGCAGCGGCCCGGGACGTGTGTGTCGCGGGA
GTCGTGATATCCCCGATTCCCCTGCGTGTCGTGGAGTGCGGGTGTCCCGG
TGTGGTCTGTGGAGCACAGTCATCCGTTTTACACACGCAATTTTGTTTTT
TCTTTTCCAAACACTCGAGCGGCGGCGTTGTTGTGCTGCTTGTGAGCTTC
ATCAAGGCATCAAGGCAGTCACAAGGATTTGCCTCTGCTGTGTGTATGTG
TTCATGTATGATATATACGTCTCACATCGATGCCGGGATGGAGAGCAGAA
GGTTTACTGGTTACACCGCATCTGTCTCGCAACAGCAGTCCGACGAGCGT
GGCATCTATATCTCCGCGTATCATACGTTTTCAGAATCTGTTTCTCTGGG
CTTCCTTTCCCTCCTCACGAACTCGGTCGCATGCAATGTACTTGTTGATA
GTGTACAGCAGTATCTCATGTACAATCGCAAGGTTATTTTTTGTGTCCTG
CCTGCTATTTATTTTATAAAAACACATAATCTAACTCACCTGTACATCCC
TAACTCACGGGCACACTCCAGGGGAAAAACCGAGAGTAGGTACCAGCTAC
AGTATTTATCTAAATAGTTATACAGTTAGTGTTGTGATGCCTTCTGGTCT
CGTAAAATAAATCGGATGGATTTTGAAATCGGAGCAGAGAGCAGAGCCGC
AACGTGTTTCATTTTTCACGATTCAAATATGTATATGTTATCATCTGTAA
TATGTATGACATGTTCTATGATACCATATACTCAGTATATATGTTATCCC
GTCATGTTATCATGTATCATACATGCTCTTTCATCAGATGTGTCATACAA
AGCAAAAGAGGACAAGTATGGCATACGATATTACGGTATTATTCGTATAG
TTTGAGCTATTATACCTGACTGCGCCTTCCCAGTATTGCATGTATAGCAT
GGATATCACTGGTGCTGGCCGCCTGTACCGCGGGTGCCCGAAGCTATCAC
TACTTGAAGGGACCCCGCTGCTTTTTTCCTCCTGCTCCCGTTGTGCTATA
GTATATACCTGACGATGATACCAAGATACTGCTGTCTTGGATTGTCCTAG
ATTACACCATATTGGGGGACCCTGAGTGGCGTTGCATTTTGCATATTTTT
CTGATTCAAAATCCTCTGGGTGCGCCGTACACAACCTTGAATGTAAATGC
CAACCGACACTCCCTTACTAAAGACATGCATAATTAGACATATCAAGTAA
GCCATGAGAGCATTTATCCTTTAGAGCAAGGTGGCTCAGGTTATCCATCC
ACCCTATGAAGCGTGACATATATCCCCCCCCTAAAAAACAAAATCAGAAA
CATAGAGCGGGCGTTGGCGTCCCACCTTTTCAAGAGGGAAGATGCCCCCC
CATACGCTAGATAAAATTAGTTCGGTCTAGGCCGAACACTCTTAGCAGGA
TGCAGCTCACCCTTCATGCGCTGAGGTAGAACGCGAGGTGTCGTCCCCCC
GCTCTCGGGGGCGGTGGCGGGCGGTCACCTCGACCGCCCAGGCCCCTGCT
ATCTCGATACCCCCCCCCCCCCCCCCCCCCCGCATCCCTTTGCGGTACTT
GGAGTATAGTCACACCTATTGAATGTGCAACATTTGGTCGTCCGGTGTGT
CTAATCAAACCCATGGCATATCGTTTGGCTTCGAAAACGAAAGGATGATG
ACCAGCACCTGGTATCATCCTTGTGAAACGCAGCCTGGACGGCGGAAACC
CGGCATATTGCTCTGTCCCAGCATAGTTGAGACGCGTGGTCTGTGTCCGT
TTGGATACGAAATGCGTCTAACACAAGTACACCCCCCCCCCTCCTCCGCC
CGCGTGCCAATGATACTGTGTCGCTTGCTCGCAAAACAACTGTCAACCCA
AACACAGACAATTTTACACGCGGCGCGTTGCGCAAGAAAACGAAGACAGG
ATGGCTTCGGGAACCCTTGGAGTGGACACTTCGAAGAGGGTTCAAGGTTG
GCTCCAGAACGAGCTCGCAGAGCGTGATGCCAAGCTGGTGCGAACGGGTG
CCGAGGAGTTGCTCCTCCTGCGCTCTCGGCCCTCCACCCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9173:1167..3758+

>mRNA_S-dermatodea_contig9173.17234.1 ID=mRNA_S-dermatodea_contig9173.17234.1|Name=mRNA_S-dermatodea_contig9173.17234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig9173:1167..3758+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACCGCTGCGACGAGCACCACCGCTTGCTCGCTCTCCCGCAACTCCGAG
AGCGCGGGGTTTAGCATCTCGCAGGAACCGCTGCGACGAGCACCACCGCT
TGCTCGCTCTCCCGCAACTCCGAGAGCGCGGGGTTTAGCATCTCGCAGAC
AATTTTACACGCGGCGCGTTGCGCAAGAAAACGAAGACAGGATGGCTTCG
GGAACCCTTGGAGTGGACACTTCGAAGAGGGTTCAAGGTTGGCTCCAGAA
CGAGCTCGCAGAGCGTGATGCCAAGCTGGTGCGAACGGGTGCCGAGGAGT
TGCTCCTCCTGCGCTCTCGGCCCTCCACCCCCACAATTTTACACGCGGCG
CGTTGCGCAAGAAAACGAAGACAGGATGGCTTCGGGAACCCTTGGAGTGG
ACACTTCGAAGAGGGTTCAAGGTTGGCTCCAGAACGAGCTCGCAGAGCGT
GATGCCAAGCTGGTGCGAACGGGTGCCGAGGAGTTGCTCCTCCTGCGCTC
TCGGCCCTCCACCCCC
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