mRNA_S-dermatodea_contig91336.17209.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI) HSP 1 Score: 136 bits (343), Expect = 6.040e-34 Identity = 83/163 (50.92%), Postives = 90/163 (55.21%), Query Frame = 1
Query: 46 LPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
LPLSQRLKIGEAVLLSARRCG+AMPKYA +VNAFV AARERSS G A V ++ S + LESKERYHFRASCLSNLAEVCQLLRWSLGRFS D+VDL G+LS E
Sbjct: 1239 LPLSQRLKIGEAVLLSARRCGDAMPKYAHLFVNAFVVAARERSSDGNXXXXXXXXXXXXXXXXXPGGDAGSASLGSAAVNXXXXXXXXXXXXXXXXX------XAAQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTE 1395
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.480e-30 Identity = 84/176 (47.73%), Postives = 89/176 (50.57%), Query Frame = 1
Query: 7 GSATTAAALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
GSA A A LPLSQRLKIGEAVLLSARRCG+AMPK+A +VNAFV AARERSS G S LESKER HFRASCLSNLAEVCQLLRWSLGRFS D+VDL G+LS E
Sbjct: 1208 GSAPGVDAAAATPLPLSQRLKIGEAVLLSARRCGDAMPKHAHLFVNAFVVAARERSSD--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS---------------------------------LESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTE 1348
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.500e-22 Identity = 64/163 (39.26%), Postives = 82/163 (50.31%), Query Frame = 1
Query: 46 LPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
L L+QRLK+GEAV+ +ARRCGEA PKYA+ +V AFV AARER VGG ++G +E++ER HFRASCLSNLAEVC LLRWSL +++D+VDL +G L++E
Sbjct: 912 LTLAQRLKVGEAVMFAARRCGEAAPKYAQHFVGAFVVAARER--------------------------VGG------------------------------------------DSGSVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLE 1006
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A5D6Y2F3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2F3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.890e-13 Identity = 61/170 (35.88%), Postives = 89/170 (52.35%), Query Frame = 1
Query: 25 AALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
AAL S PL++R+K+ EA+L SA+RCGE +P +A+ +V A++ R P + +V A + ++GG + +RE E +G+ A VG PG + S+ L E+ RASCLSNLAEVC LL+W L F D++ GIL +E
Sbjct: 832 AALRDRSEPLARRIKLSEALLFSAKRCGETLPVHAKTFVFAYLDCIR--------PPAAASARVGASKRFQLIQEIGG--------EREGERE-EGDGRVAAAVG---------PGSDGSDP-LAEAT----LRASCLSNLAEVCVLLQWGLQPFVADVMTCVFGILQLE 970
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A3F2RMA9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMA9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.480e-13 Identity = 58/169 (34.32%), Postives = 80/169 (47.34%), Query Frame = 1
Query: 28 ALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
AL+ S L R+K+ EA+L SA+RCGE +PK+A+ +V A++ R PP K E A+ R Q V+ + + E E + G ESE LL + RASCLSNLAEVC LL+W L F D++ G+L +E
Sbjct: 552 ALSDSSSTLETRIKLSEALLFSAKRCGETLPKFAKLFVYAYLDCIR-------------PPPSKRKHVERIQAEASRRVQLIQEVRGTEELDAHAE--------AENSEDG-----HESEEELLAAAT---LRASCLSNLAEVCALLQWGLQPFLLDVLTCVFGVLQVE 691
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK) HSP 1 Score: 75.9 bits (185), Expect = 3.530e-13 Identity = 48/160 (30.00%), Postives = 73/160 (45.62%), Query Frame = 1
Query: 55 SQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
+QR+K+GEA++ +AR+CG ++ KY+++++ AF+ AR RS+ +VE + + +FR+SCLSNLAEVC LL+WSL R++QDI DL +GIL ME
Sbjct: 80 AQRVKVGEALMCAARKCGASISKYSQYFMRAFILGARMRSA-------------------------------------------DVE----------------------------DDSDWVNFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQME 168
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: G4ZD77_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZD77_PHYSP) HSP 1 Score: 76.6 bits (187), Expect = 4.720e-13 Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 1
Query: 28 ALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
AL S L R+K+ EA+L SA+RCGE +PKY + +V A++ R PP K E + R Q V++ + + +E P E E+G E RASCLSNLAEVC LL+W L F D++ G+L ME
Sbjct: 746 ALLDSSNSLESRIKLSEALLFSAKRCGETLPKYGKLFVYAYLDCIR-------------PPPSQRKRVERMQQETSKRIQLIQEVENPATKTQEA----------------AQPA-NEPESGEQELLAAATLRASCLSNLAEVCALLQWGLQPFLLDVMTCVFGVLQME 884
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: A0A8K1C9E9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9E9_PYTOL) HSP 1 Score: 74.7 bits (182), Expect = 2.210e-12 Identity = 52/168 (30.95%), Postives = 78/168 (46.43%), Query Frame = 1
Query: 31 LAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
L ++ L +R+K+GEA+L +A+RCGE +PKYA+ +V A++ R S P K++ ++ + DAP Q + S L+E+ RASCLSNLAEVC LL W+L F+ D++ GIL +E
Sbjct: 828 LRDTTVSLEKRIKLGEALLFTAKRCGEMLPKYAKVFVYAYLDCIRPPQSRNAKP----------KKSFQLIQEIDPNEKKDAPAQD----------------------------NDASAVALVEAT----LRASCLSNLAEVCALLGWALAPFAVDVLTCVFGILQLE 953
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: H3GK10_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GK10_PHYRM) HSP 1 Score: 73.9 bits (180), Expect = 4.060e-12 Identity = 59/170 (34.71%), Postives = 82/170 (48.24%), Query Frame = 1
Query: 28 ALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGRE-ESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
AL + L R+K+ EA+L SA+RCGE +PK+A+ +V A++ R S R +++ KE S Q+ +Q S E E K + P E ESE LL + RASCLSNLAEVC LL+W L F D++ G+L +E
Sbjct: 745 ALRDPNTSLESRIKLSEALLFSAKRCGETLPKFAKLFVYAYLDCIRPLPSKRQHV------ELIQKEA-SRRVQL---------IQEVSSAEEEAAAKAESEL----------PDNEPESEAELLAAAT---LRASCLSNLAEVCALLQWGLQPFLLDVLTCVFGVLQLE 885
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Match: D0MTC1_PHYIT (RTP1_C1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTC1_PHYIT) HSP 1 Score: 73.6 bits (179), Expect = 5.510e-12 Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 52 LSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFVTAARERSSGRTGPGSCVPPKVLAKETESASAQVGGRGQPDAPVQHASDREREVEGKGARGVGGEGNRTGCGPGREESENGLLESKERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILSME 534
+ R+K+ EA+L SA+RCGE +P+Y + +V A++ R PP K E +V R Q +Q D E + T ++E EN E RASCLSNLAEVC LL+W L F +D++ G+L +E
Sbjct: 755 MESRIKLSEALLFSAKRCGETLPQYGKLFVYAYLDCIR-------------PPPSQKKRVERIHKEVTKRVQ---LIQEIQDDEEQA--------------TALDESQDEPEN-EQELLAAATLRASCLSNLAEVCALLQWGLQPFLRDVLTCVFGVLQLE 884 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91336.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig91336.17209.1 >prot_S-dermatodea_contig91336.17209.1 ID=prot_S-dermatodea_contig91336.17209.1|Name=mRNA_S-dermatodea_contig91336.17209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=178bp PSGSATTAAALAGVSLPLSQRLKIGEAVLLSARRCGEAMPKYARFYVNAFback to top mRNA from alignment at S-dermatodea_contig91336:3..536+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig91336.17209.1 ID=mRNA_S-dermatodea_contig91336.17209.1|Name=mRNA_S-dermatodea_contig91336.17209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig91336:3..536+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig91336:3..536+ >mRNA_S-dermatodea_contig91336.17209.1 ID=mRNA_S-dermatodea_contig91336.17209.1|Name=mRNA_S-dermatodea_contig91336.17209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig91336:3..536+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |